RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 HSP90AA1P07900 732 aaKnown RBP28.06■■■□□ 2.08
HOXC9-201ENST00000303450 GALNT17Q6IS24 598 aa28.06■■■□□ 2.08
HOXC9-201ENST00000303450 REXO1Q8N1G1 1221 aaKnown RBP28.06■■■□□ 2.08
HOXC9-201ENST00000303450 C8orf76Q96K31 380 aa28.06■■■□□ 2.08
HOXC9-201ENST00000303450 PHF20Q9BVI0 1012 aa28.06■■■□□ 2.08
HOXC9-201ENST00000303450 MCOLN1Q9GZU1 580 aa28.06■■■□□ 2.08
HOXC9-201ENST00000303450 PCDHA4Q9UN74 947 aa28.06■■■□□ 2.08
HOXC9-201ENST00000303450 BECN1Q14457 450 aa28.05■■■□□ 2.08
HOXC9-201ENST00000303450 MAMDC4Q6UXC1 1216 aa28.05■■■□□ 2.08
HOXC9-201ENST00000303450 SH3TC2Q8TF17 1288 aa28.05■■■□□ 2.08
HOXC9-201ENST00000303450 PXMP2Q9NR77 195 aa28.05■■■□□ 2.08
HOXC9-201ENST00000303450 LOC102724159A0A0B4J2E5 919 aa28.04■■■□□ 2.08
HOXC9-201ENST00000303450 EIF2AK2P19525 551 aaKnown RBP28.04■■■□□ 2.08
HOXC9-201ENST00000303450 CYP2C19P33261 490 aa28.04■■■□□ 2.08
HOXC9-201ENST00000303450 PWP2Q15269 919 aaKnown RBP28.04■■■□□ 2.08
HOXC9-201ENST00000303450 ARMCX2Q7L311 632 aa28.04■■■□□ 2.08
HOXC9-201ENST00000303450 BLIDQ8IZY5 108 aa28.04■■■□□ 2.08
HOXC9-201ENST00000303450 FOXD4L1Q9NU39 408 aa28.04■■■□□ 2.08
HOXC9-201ENST00000303450 SYNGAP1Q96PV0 1343 aa28.04■■■□□ 2.08
HOXC9-201ENST00000303450 FOSP01100 380 aaPredicted RBP28.03■■■□□ 2.08
HOXC9-201ENST00000303450 CLK2P49760 499 aaKnown RBP28.03■■■□□ 2.08
HOXC9-201ENST00000303450 AP3B2Q13367 1082 aa28.03■■■□□ 2.08
HOXC9-201ENST00000303450 JAKMIP3Q5VZ66 844 aa28.03■■■□□ 2.08
HOXC9-201ENST00000303450 KRT40Q6A162 431 aa28.03■■■□□ 2.08
HOXC9-201ENST00000303450 MCTP2Q6DN12 878 aa28.03■■■□□ 2.08
HOXC9-201ENST00000303450 DAGLBQ8NCG7 672 aa28.03■■■□□ 2.08
HOXC9-201ENST00000303450 TMEM260Q9NX78 707 aa28.03■■■□□ 2.08
HOXC9-201ENST00000303450 PCDHA6Q9UN73 950 aa28.03■■■□□ 2.08
HOXC9-201ENST00000303450 PCDHA8Q9Y5H6 950 aa28.03■■■□□ 2.08
HOXC9-201ENST00000303450 MCM3APO60318 1980 aa28.03■■■□□ 2.08
HOXC9-201ENST00000303450 IWS1Q96ST2 819 aa28.02■■■□□ 2.08
HOXC9-201ENST00000303450 EHMT1Q9H9B1 1298 aa28.02■■■□□ 2.08
HOXC9-201ENST00000303450 BRMS1Q9HCU9 246 aa28.02■■■□□ 2.08
HOXC9-201ENST00000303450 ADAMTS3O15072 1205 aa28.02■■■□□ 2.08
HOXC9-201ENST00000303450 IGHA2P01877 340 aa28.02■■■□□ 2.08
HOXC9-201ENST00000303450 INHAP05111 366 aa28.02■■■□□ 2.08
HOXC9-201ENST00000303450 GUCY1B3Q02153 619 aa28.02■■■□□ 2.08
HOXC9-201ENST00000303450 PDE4DQ08499 809 aa28.02■■■□□ 2.08
HOXC9-201ENST00000303450 TRIM32Q13049 653 aa28.02■■■□□ 2.08
HOXC9-201ENST00000303450 NPY5RQ15761 445 aa28.02■■■□□ 2.08
HOXC9-201ENST00000303450 COL13A1Q5TAT6 717 aaPredicted RBP28.02■■■□□ 2.08
HOXC9-201ENST00000303450 RASGRP4Q8TDF6 673 aa28.02■■■□□ 2.08
HOXC9-201ENST00000303450 CDKN2AIPQ9NXV6 580 aaPredicted RBP28.02■■■□□ 2.08
HOXC9-201ENST00000303450 CNPY2Q9Y2B0 182 aa28.02■■■□□ 2.08
HOXC9-201ENST00000303450 DDX49Q9Y6V7 483 aaKnown RBP28.02■■■□□ 2.08
HOXC9-201ENST00000303450 HTTP42858 3142 aa28.01■■■□□ 2.07
HOXC9-201ENST00000303450 MMP1P03956 469 aa28.01■■■□□ 2.07
HOXC9-201ENST00000303450 UBXN2AP68543 259 aa28.01■■■□□ 2.07
HOXC9-201ENST00000303450 PGM5Q15124 567 aa28.01■■■□□ 2.07
HOXC9-201ENST00000303450 FBXO18Q8NFZ0 1043 aa28.01■■■□□ 2.07
HOXC9-201ENST00000303450 MORC4Q8TE76 937 aa28.01■■■□□ 2.07
HOXC9-201ENST00000303450 PGBD1Q96JS3 809 aa28.01■■■□□ 2.07
HOXC9-201ENST00000303450 PDCD2LQ9BRP1 358 aa28.01■■■□□ 2.07
HOXC9-201ENST00000303450 ANO3Q9BYT9 981 aa28.01■■■□□ 2.07
HOXC9-201ENST00000303450 SNAI1O95863 264 aaPredicted RBP28■■■□□ 2.07
HOXC9-201ENST00000303450 NR3C2P08235 984 aa28■■■□□ 2.07
HOXC9-201ENST00000303450 EDNRBP24530 442 aa28■■■□□ 2.07
HOXC9-201ENST00000303450 SAFBQ15424 915 aaKnown RBP eCLIP28■■■□□ 2.07
HOXC9-201ENST00000303450 MYCLP12524 364 aaPredicted RBP27.99■■■□□ 2.07
HOXC9-201ENST00000303450 PRKAR2AP13861 404 aaKnown RBP27.99■■■□□ 2.07
HOXC9-201ENST00000303450 KRT2P35908 639 aa27.99■■■□□ 2.07
HOXC9-201ENST00000303450 CACNB2Q08289 660 aaPredicted RBP27.99■■■□□ 2.07
HOXC9-201ENST00000303450 FRMPD4Q14CM0 1322 aa27.99■■■□□ 2.07
HOXC9-201ENST00000303450 RPTORQ8N122 1335 aa27.99■■■□□ 2.07
HOXC9-201ENST00000303450 STXBP2Q15833 593 aa27.98■■■□□ 2.07
HOXC9-201ENST00000303450 PRAMEF19Q5SWL8 479 aa27.98■■■□□ 2.07
HOXC9-201ENST00000303450 ABHD16BQ9H3Z7 469 aa27.98■■■□□ 2.07
HOXC9-201ENST00000303450 CCND2P30279 289 aa27.97■■■□□ 2.07
HOXC9-201ENST00000303450 LARP1BQ659C4 914 aaKnown RBP27.97■■■□□ 2.07
HOXC9-201ENST00000303450 EEPD1Q7L9B9 569 aa27.97■■■□□ 2.07
HOXC9-201ENST00000303450 SPRYD3Q8NCJ5 442 aa27.97■■■□□ 2.07
HOXC9-201ENST00000303450 IL31RAQ8NI17 732 aa27.97■■■□□ 2.07
HOXC9-201ENST00000303450 H3BQV1 296 aa27.97■■■□□ 2.07
HOXC9-201ENST00000303450 M0R2N6 131 aa27.97■■■□□ 2.07
HOXC9-201ENST00000303450 MAP3K21Q5TCX8 1036 aa27.97■■■□□ 2.07
HOXC9-201ENST00000303450 IFFO2Q5TF58 517 aa27.97■■■□□ 2.07
HOXC9-201ENST00000303450 VSIG10LQ86VR7 867 aa27.97■■■□□ 2.07
HOXC9-201ENST00000303450 DIS3L2Q8IYB7 885 aaKnown RBP27.97■■■□□ 2.07
HOXC9-201ENST00000303450 OXER1Q8TDS5 423 aa27.97■■■□□ 2.07
HOXC9-201ENST00000303450 ARMC5Q96C12 935 aa27.97■■■□□ 2.07
HOXC9-201ENST00000303450 NRBP1Q9UHY1 535 aa27.97■■■□□ 2.07
HOXC9-201ENST00000303450 ZHX1Q9UKY1 873 aaPredicted RBP27.97■■■□□ 2.07
HOXC9-201ENST00000303450 PDCP20941 246 aa27.96■■■□□ 2.07
HOXC9-201ENST00000303450 ACVR2BQ13705 512 aa27.96■■■□□ 2.07
HOXC9-201ENST00000303450 FBXO16Q8IX29 292 aaPredicted RBP27.96■■■□□ 2.07
HOXC9-201ENST00000303450 VTA1Q9NP79 307 aa27.96■■■□□ 2.07
HOXC9-201ENST00000303450 CENPFP49454 3210 aa27.95■■■□□ 2.06
HOXC9-201ENST00000303450 CCDC194A0A1B0GVG4 234 aa27.95■■■□□ 2.06
HOXC9-201ENST00000303450 BTBD18B2RXH4 712 aa27.95■■■□□ 2.06
HOXC9-201ENST00000303450 EIF3JO75822 258 aaKnown RBP27.95■■■□□ 2.06
HOXC9-201ENST00000303450 CYBAP13498 195 aa27.95■■■□□ 2.06
HOXC9-201ENST00000303450 ANP32AP39687 249 aaKnown RBP27.95■■■□□ 2.06
HOXC9-201ENST00000303450 PCNX4Q63HM2 1172 aa27.95■■■□□ 2.06
HOXC9-201ENST00000303450 XRRA1Q6P2D8 792 aa27.95■■■□□ 2.06
HOXC9-201ENST00000303450 KRT25Q7Z3Z0 450 aa27.95■■■□□ 2.06
HOXC9-201ENST00000303450 MYCP01106 439 aaPredicted RBP27.94■■■□□ 2.06
HOXC9-201ENST00000303450 CNGA1P29973 690 aa27.94■■■□□ 2.06
HOXC9-201ENST00000303450 SREBF1P36956 1147 aa27.94■■■□□ 2.06
HOXC9-201ENST00000303450 NR5A1Q13285 461 aa27.94■■■□□ 2.06
HOXC9-201ENST00000303450 TRPV1Q8NER1 839 aa27.94■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms