RNA–Protein interactions for RNA: ENST00000292729.12

USP41-201, Transcript of ubiquitin specific peptidase 41, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene USP41, Length 920 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP41-201ENST00000292729 PPP2R5BQ15173 497 aa12.36□□□□□ -0.43
USP41-201ENST00000292729 PTGISQ16647 500 aa12.36□□□□□ -0.43
USP41-201ENST00000292729 RCSD1Q6JBY9 416 aa12.36□□□□□ -0.43
USP41-201ENST00000292729 MFSD14AQ96MC6 490 aa12.36□□□□□ -0.43
USP41-201ENST00000292729 CRBNQ96SW2 442 aa12.36□□□□□ -0.43
USP41-201ENST00000292729 UPF3BQ9BZI7 483 aaKnown RBP12.36□□□□□ -0.43
USP41-201ENST00000292729 MTUS1Q9ULD2 1270 aa12.36□□□□□ -0.43
USP41-201ENST00000292729 PRR12Q9ULL5 1215 aa12.36□□□□□ -0.43
USP41-201ENST00000292729 MICAL3Q7RTP6 2002 aa12.35□□□□□ -0.43
USP41-201ENST00000292729 PRDM1O75626 825 aa12.35□□□□□ -0.43
USP41-201ENST00000292729 ICAM1P05362 532 aa12.35□□□□□ -0.43
USP41-201ENST00000292729 MCCP23508 829 aa12.35□□□□□ -0.43
USP41-201ENST00000292729 TDO2P48775 406 aa12.35□□□□□ -0.43
USP41-201ENST00000292729 RBL2Q08999 1139 aa12.35□□□□□ -0.43
USP41-201ENST00000292729 IKBKEQ14164 716 aa12.35□□□□□ -0.43
USP41-201ENST00000292729 PTPROQ16827 1216 aa12.35□□□□□ -0.43
USP41-201ENST00000292729 LRRC8DQ7L1W4 858 aa12.35□□□□□ -0.43
USP41-201ENST00000292729 SESTD1Q86VW0 696 aa12.35□□□□□ -0.43
USP41-201ENST00000292729 FBXO22Q8NEZ5 403 aa12.35□□□□□ -0.43
USP41-201ENST00000292729 SCFD2Q8WU76 684 aa12.35□□□□□ -0.43
USP41-201ENST00000292729 MRPL38Q96DV4 380 aaKnown RBP12.35□□□□□ -0.43
USP41-201ENST00000292729 SAMD11Q96NU1 681 aa12.35□□□□□ -0.43
USP41-201ENST00000292729 NLRC5Q86WI3 1866 aa12.35□□□□□ -0.43
USP41-201ENST00000292729 B4DLN1 442 aa12.34□□□□□ -0.43
USP41-201ENST00000292729 SLC3A2P08195 630 aaKnown RBP12.34□□□□□ -0.43
USP41-201ENST00000292729 MRPL12P52815 198 aaKnown RBP12.34□□□□□ -0.43
USP41-201ENST00000292729 TFAP4Q01664 338 aa12.34□□□□□ -0.43
USP41-201ENST00000292729 BAATQ14032 418 aaPredicted RBP12.34□□□□□ -0.43
USP41-201ENST00000292729 GPNMBQ14956 572 aa12.34□□□□□ -0.43
USP41-201ENST00000292729 TIGD5Q53EQ6 642 aa12.34□□□□□ -0.43
USP41-201ENST00000292729 KCTD1Q719H9 257 aa12.34□□□□□ -0.43
USP41-201ENST00000292729 TMCO2Q7Z6W1 182 aaPredicted RBP12.34□□□□□ -0.43
USP41-201ENST00000292729 APPBP2Q92624 585 aa12.34□□□□□ -0.43
USP41-201ENST00000292729 PURBQ96QR8 312 aaKnown RBP12.34□□□□□ -0.43
USP41-201ENST00000292729 PNMA2Q9UL42 364 aa12.34□□□□□ -0.43
USP41-201ENST00000292729 INSL6Q9Y581 213 aa12.34□□□□□ -0.43
USP41-201ENST00000292729 RALGAPA2Q2PPJ7 1873 aa12.34□□□□□ -0.43
USP41-201ENST00000292729 KIAA1217Q5T5P2 1943 aa12.33□□□□□ -0.44
USP41-201ENST00000292729 C19orf67A6NJJ6 358 aa12.33□□□□□ -0.44
USP41-201ENST00000292729 APPP05067 770 aa12.33□□□□□ -0.44
USP41-201ENST00000292729 ZP2Q05996 745 aa12.33□□□□□ -0.44
USP41-201ENST00000292729 PDE4DQ08499 809 aa12.33□□□□□ -0.44
USP41-201ENST00000292729 DNERQ8NFT8 737 aa12.33□□□□□ -0.44
USP41-201ENST00000292729 PABPC5Q96DU9 382 aaKnown RBP12.33□□□□□ -0.44
USP41-201ENST00000292729 NACAP1Q9BZK3 213 aa12.33□□□□□ -0.44
USP41-201ENST00000292729 BCL11AQ9H165 835 aa12.33□□□□□ -0.44
USP41-201ENST00000292729 RANBP17Q9H2T7 1088 aaKnown RBP12.33□□□□□ -0.44
USP41-201ENST00000292729 EPB41L4AQ9HCS5 686 aaPredicted RBP12.33□□□□□ -0.44
USP41-201ENST00000292729 PTPDC1A2A3K4 754 aa12.32□□□□□ -0.44
USP41-201ENST00000292729 PATL2C9JE40 543 aaKnown RBP12.32□□□□□ -0.44
USP41-201ENST00000292729 GPAA1O43292 621 aa12.32□□□□□ -0.44
USP41-201ENST00000292729 NCK2O43639 380 aa12.32□□□□□ -0.44
USP41-201ENST00000292729 ST18O60284 1047 aa12.32□□□□□ -0.44
USP41-201ENST00000292729 NBNO60934 754 aa12.32□□□□□ -0.44
USP41-201ENST00000292729 ZFYP08048 801 aaPredicted RBP12.32□□□□□ -0.44
USP41-201ENST00000292729 TXNP10599 105 aaKnown RBP12.32□□□□□ -0.44
USP41-201ENST00000292729 CKBP12277 381 aa12.32□□□□□ -0.44
USP41-201ENST00000292729 EDNRBP24530 442 aa12.32□□□□□ -0.44
USP41-201ENST00000292729 SNAP25P60880 206 aa12.32□□□□□ -0.44
USP41-201ENST00000292729 GDF6Q6KF10 455 aaPredicted RBP12.32□□□□□ -0.44
USP41-201ENST00000292729 RNF207Q6ZRF8 634 aa12.32□□□□□ -0.44
USP41-201ENST00000292729 ADHFE1Q8IWW8 467 aa12.32□□□□□ -0.44
USP41-201ENST00000292729 IFNL3Q8IZI9 196 aa12.32□□□□□ -0.44
USP41-201ENST00000292729 KBTBD3Q8NAB2 608 aa12.32□□□□□ -0.44
USP41-201ENST00000292729 OSBP2Q969R2 916 aa12.32□□□□□ -0.44
USP41-201ENST00000292729 CTAGE1Q96RT6 745 aa12.32□□□□□ -0.44
USP41-201ENST00000292729 PRRX2Q99811 253 aa12.32□□□□□ -0.44
USP41-201ENST00000292729 STX8Q9UNK0 236 aa12.32□□□□□ -0.44
USP41-201ENST00000292729 H3BQ06 376 aaPredicted RBP12.31□□□□□ -0.44
USP41-201ENST00000292729 NFIBO00712 420 aa12.31□□□□□ -0.44
USP41-201ENST00000292729 AMHP03971 560 aa12.31□□□□□ -0.44
USP41-201ENST00000292729 CASTP20810 708 aaKnown RBP12.31□□□□□ -0.44
USP41-201ENST00000292729 CHMP4BP1P59074 171 aa12.31□□□□□ -0.44
USP41-201ENST00000292729 HTRA4P83105 476 aaPredicted RBP12.31□□□□□ -0.44
USP41-201ENST00000292729 COL19A1Q14993 1142 aa12.31□□□□□ -0.44
USP41-201ENST00000292729 PKN1Q16512 942 aa12.31□□□□□ -0.44
USP41-201ENST00000292729 BTNL9Q6UXG8 535 aa12.31□□□□□ -0.44
USP41-201ENST00000292729 HFE2Q6ZVN8 426 aa12.31□□□□□ -0.44
USP41-201ENST00000292729 BANK1Q8NDB2 785 aa12.31□□□□□ -0.44
USP41-201ENST00000292729 SP7Q8TDD2 431 aaPredicted RBP12.31□□□□□ -0.44
USP41-201ENST00000292729 PPP1R13LQ8WUF5 828 aa12.31□□□□□ -0.44
USP41-201ENST00000292729 DCAF4Q8WV16 495 aa12.31□□□□□ -0.44
USP41-201ENST00000292729 DHX38Q92620 1227 aaKnown RBP12.31□□□□□ -0.44
USP41-201ENST00000292729 COPS5Q92905 334 aa12.31□□□□□ -0.44
USP41-201ENST00000292729 POP1Q99575 1024 aaKnown RBP12.31□□□□□ -0.44
USP41-201ENST00000292729 C17orf80Q9BSJ5 609 aa12.31□□□□□ -0.44
USP41-201ENST00000292729 COL4A6Q14031 1691 aa12.31□□□□□ -0.44
USP41-201ENST00000292729 WDFY4Q6ZS81 3184 aa12.31□□□□□ -0.44
USP41-201ENST00000292729 MYH7BA7E2Y1 1941 aa12.31□□□□□ -0.44
USP41-201ENST00000292729 H3BNC9 293 aa12.3□□□□□ -0.44
USP41-201ENST00000292729 RNF113AO15541 343 aaKnown RBP12.3□□□□□ -0.44
USP41-201ENST00000292729 MMP3P08254 477 aa12.3□□□□□ -0.44
USP41-201ENST00000292729 MS4A1P11836 297 aa12.3□□□□□ -0.44
USP41-201ENST00000292729 CALML3P27482 149 aa12.3□□□□□ -0.44
USP41-201ENST00000292729 PTPN5P54829 565 aa12.3□□□□□ -0.44
USP41-201ENST00000292729 PTK7Q13308 1070 aa12.3□□□□□ -0.44
USP41-201ENST00000292729 FAM117BQ6P1L5 589 aa12.3□□□□□ -0.44
USP41-201ENST00000292729 BMP8AQ7Z5Y6 402 aa12.3□□□□□ -0.44
USP41-201ENST00000292729 KATNAL1Q9BW62 490 aa12.3□□□□□ -0.44
USP41-201ENST00000292729 NSUN3Q9H649 340 aaKnown RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms