RNA–Protein interactions for RNA: ENST00000288398.10

TPM1-202, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-202ENST00000288398 PBX4Q9BYU1 374 aa16.39■□□□□ 0.21
TPM1-202ENST00000288398 VAT1LQ9HCJ6 419 aa16.39■□□□□ 0.21
TPM1-202ENST00000288398 MRPL11Q9Y3B7 192 aaKnown RBP16.39■□□□□ 0.21
TPM1-202ENST00000288398 CUL9Q8IWT3 2517 aa16.38■□□□□ 0.21
TPM1-202ENST00000288398 GRXCR1A8MXD5 290 aa16.38■□□□□ 0.21
TPM1-202ENST00000288398 PFKMP08237 780 aa16.38■□□□□ 0.21
TPM1-202ENST00000288398 ADGRF4Q8IZF3 695 aa16.38■□□□□ 0.21
TPM1-202ENST00000288398 ENAHQ8N8S7 591 aaPredicted RBP16.38■□□□□ 0.21
TPM1-202ENST00000288398 RETREG2Q8NC44 543 aa16.38■□□□□ 0.21
TPM1-202ENST00000288398 RUFY2Q8WXA3 655 aa16.38■□□□□ 0.21
TPM1-202ENST00000288398 CPVLQ9H3G5 476 aa16.38■□□□□ 0.21
TPM1-202ENST00000288398 SLC28A3Q9HAS3 691 aa16.38■□□□□ 0.21
TPM1-202ENST00000288398 TRMT13Q9NUP7 481 aaKnown RBP16.38■□□□□ 0.21
TPM1-202ENST00000288398 ZSWIM5Q9P217 1185 aa16.38■□□□□ 0.21
TPM1-202ENST00000288398 SLC4A7Q9Y6M7 1214 aa16.38■□□□□ 0.21
TPM1-202ENST00000288398 GRIN2DO15399 1336 aa16.38■□□□□ 0.21
TPM1-202ENST00000288398 UMODL1Q5DID0 1318 aa16.38■□□□□ 0.21
TPM1-202ENST00000288398 ERICH2A1L162 156 aa16.37■□□□□ 0.21
TPM1-202ENST00000288398 ACTN1P12814 892 aa16.37■□□□□ 0.21
TPM1-202ENST00000288398 EDNRBP24530 442 aa16.37■□□□□ 0.21
TPM1-202ENST00000288398 STXBP2Q15833 593 aa16.37■□□□□ 0.21
TPM1-202ENST00000288398 RASIP1Q5U651 963 aa16.37■□□□□ 0.21
TPM1-202ENST00000288398 ARHGEF16Q5VV41 709 aa16.37■□□□□ 0.21
TPM1-202ENST00000288398 SEPT14Q6ZU15 432 aa16.37■□□□□ 0.21
TPM1-202ENST00000288398 ANKS1AQ92625 1134 aa16.37■□□□□ 0.21
TPM1-202ENST00000288398 RMDN3Q96TC7 470 aa16.37■□□□□ 0.21
TPM1-202ENST00000288398 COL25A1Q9BXS0 654 aaPredicted RBP16.37■□□□□ 0.21
TPM1-202ENST00000288398 LAMA4Q16363 1823 aa16.36■□□□□ 0.21
TPM1-202ENST00000288398 GH1P01241 217 aa16.36■□□□□ 0.21
TPM1-202ENST00000288398 CYP2C9P11712 490 aa16.36■□□□□ 0.21
TPM1-202ENST00000288398 PBX2P40425 430 aa16.36■□□□□ 0.21
TPM1-202ENST00000288398 TRAF1Q13077 416 aa16.36■□□□□ 0.21
TPM1-202ENST00000288398 QRICH1Q2TAL8 776 aa16.36■□□□□ 0.21
TPM1-202ENST00000288398 NBPF20Q3BBV1 942 aa16.36■□□□□ 0.21
TPM1-202ENST00000288398 NFRKBQ6P4R8 1299 aa16.36■□□□□ 0.21
TPM1-202ENST00000288398 CCDC155Q8N6L0 562 aa16.36■□□□□ 0.21
TPM1-202ENST00000288398 SYMPKQ92797 1274 aaKnown RBP16.36■□□□□ 0.21
TPM1-202ENST00000288398 SCLYQ96I15 445 aa16.36■□□□□ 0.21
TPM1-202ENST00000288398 IWS1Q96ST2 819 aa16.36■□□□□ 0.21
TPM1-202ENST00000288398 WNT8AQ9H1J5 351 aa16.36■□□□□ 0.21
TPM1-202ENST00000288398 LCTP09848 1927 aa16.35■□□□□ 0.21
TPM1-202ENST00000288398 A6NJR5 290 aa16.35■□□□□ 0.21
TPM1-202ENST00000288398 CFBP00751 764 aa16.35■□□□□ 0.21
TPM1-202ENST00000288398 PTPN11Q06124 597 aaPredicted RBP16.35■□□□□ 0.21
TPM1-202ENST00000288398 BFSP2Q13515 415 aa16.35■□□□□ 0.21
TPM1-202ENST00000288398 SART3Q15020 963 aaKnown RBP16.35■□□□□ 0.21
TPM1-202ENST00000288398 CHST3Q7LGC8 479 aa16.35■□□□□ 0.21
TPM1-202ENST00000288398 DEFB128Q7Z7B8 93 aa16.35■□□□□ 0.21
TPM1-202ENST00000288398 RALYLQ86SE5 291 aaKnown RBP16.35■□□□□ 0.21
TPM1-202ENST00000288398 SYTL5Q8TDW5 730 aaPredicted RBP16.35■□□□□ 0.21
TPM1-202ENST00000288398 PPM1EQ8WY54 764 aa16.35■□□□□ 0.21
TPM1-202ENST00000288398 COPS5Q92905 334 aa16.35■□□□□ 0.21
TPM1-202ENST00000288398 AMNQ9BXJ7 453 aa16.35■□□□□ 0.21
TPM1-202ENST00000288398 FTOQ9C0B1 505 aaKnown RBP eCLIP16.35■□□□□ 0.21
TPM1-202ENST00000288398 PRDM12Q9H4Q4 367 aa16.35■□□□□ 0.21
TPM1-202ENST00000288398 CXXC1Q9P0U4 656 aaPredicted RBP16.35■□□□□ 0.21
TPM1-202ENST00000288398 IGFBP4P22692 258 aa16.34■□□□□ 0.21
TPM1-202ENST00000288398 RFC2P35250 354 aa16.34■□□□□ 0.21
TPM1-202ENST00000288398 PPP2R2DQ66LE6 453 aa16.34■□□□□ 0.21
TPM1-202ENST00000288398 TAAR1Q96RJ0 339 aa16.34■□□□□ 0.21
TPM1-202ENST00000288398 NKX2-4Q9H2Z4 354 aa16.34■□□□□ 0.21
TPM1-202ENST00000288398 JMJD4Q9H9V9 463 aa16.34■□□□□ 0.21
TPM1-202ENST00000288398 U3KPZ7 1027 aaPredicted RBP16.34■□□□□ 0.21
TPM1-202ENST00000288398 KLRF2D3W0D1 207 aa16.33■□□□□ 0.2
TPM1-202ENST00000288398 ATP2A2P16615 1042 aaKnown RBP16.33■□□□□ 0.2
TPM1-202ENST00000288398 EIF2AK2P19525 551 aaKnown RBP16.33■□□□□ 0.2
TPM1-202ENST00000288398 CASTP20810 708 aaKnown RBP16.33■□□□□ 0.2
TPM1-202ENST00000288398 TTC22Q5TAA0 569 aa16.33■□□□□ 0.2
TPM1-202ENST00000288398 AFG1LQ8WV93 481 aa16.33■□□□□ 0.2
TPM1-202ENST00000288398 MRVI1Q9Y6F6 885 aa16.33■□□□□ 0.2
TPM1-202ENST00000288398 UNC80Q8N2C7 3258 aa16.32■□□□□ 0.2
TPM1-202ENST00000288398 PITPNM1O00562 1244 aa16.32■□□□□ 0.2
TPM1-202ENST00000288398 EIF3JO75822 258 aaKnown RBP16.32■□□□□ 0.2
TPM1-202ENST00000288398 ARIH2O95376 493 aa16.32■□□□□ 0.2
TPM1-202ENST00000288398 MMP3P08254 477 aa16.32■□□□□ 0.2
TPM1-202ENST00000288398 PTGISQ16647 500 aa16.32■□□□□ 0.2
TPM1-202ENST00000288398 DGKDQ16760 1214 aa16.32■□□□□ 0.2
TPM1-202ENST00000288398 LY6KQ17RY6 165 aa16.32■□□□□ 0.2
TPM1-202ENST00000288398 HOMER1Q86YM7 354 aa16.32■□□□□ 0.2
TPM1-202ENST00000288398 IL27Q8NEV9 243 aa16.32■□□□□ 0.2
TPM1-202ENST00000288398 TBC1D5Q92609 795 aa16.32■□□□□ 0.2
TPM1-202ENST00000288398 KATNAL1Q9BW62 490 aa16.32■□□□□ 0.2
TPM1-202ENST00000288398 TSPYL2Q9H2G4 693 aaPredicted RBP16.32■□□□□ 0.2
TPM1-202ENST00000288398 PCDHA11Q9Y5I1 949 aa16.32■□□□□ 0.2
TPM1-202ENST00000288398 PCDHA1Q9Y5I3 950 aa16.32■□□□□ 0.2
TPM1-202ENST00000288398 IFIT3O14879 490 aaKnown RBP16.31■□□□□ 0.2
TPM1-202ENST00000288398 ZBTB5O15062 677 aa16.31■□□□□ 0.2
TPM1-202ENST00000288398 MYCLP12524 364 aaPredicted RBP16.31■□□□□ 0.2
TPM1-202ENST00000288398 RABGGTBP53611 331 aa16.31■□□□□ 0.2
TPM1-202ENST00000288398 DHX37Q8IY37 1157 aaKnown RBP16.31■□□□□ 0.2
TPM1-202ENST00000288398 C7orf31Q8N865 590 aa16.31■□□□□ 0.2
TPM1-202ENST00000288398 PXMP2Q9NR77 195 aa16.31■□□□□ 0.2
TPM1-202ENST00000288398 MAP3K20Q9NYL2 800 aaKnown RBP16.31■□□□□ 0.2
TPM1-202ENST00000288398 SUPT16HQ9Y5B9 1047 aaKnown RBP16.31■□□□□ 0.2
TPM1-202ENST00000288398 KIF28PB7ZC32 967 aa16.3■□□□□ 0.2
TPM1-202ENST00000288398 NR3C2P08235 984 aa16.3■□□□□ 0.2
TPM1-202ENST00000288398 KCNJ6P48051 423 aa16.3■□□□□ 0.2
TPM1-202ENST00000288398 ARHGAP1Q07960 439 aa16.3■□□□□ 0.2
TPM1-202ENST00000288398 LAMC2Q13753 1193 aa16.3■□□□□ 0.2
TPM1-202ENST00000288398 TMEM67Q5HYA8 995 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms