RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 RNF208Q9H0X6 261 aa14.66□□□□□ -0.06
SS18-202ENST00000269138 PXMP2Q9NR77 195 aa14.66□□□□□ -0.06
SS18-202ENST00000269138 RPTORQ8N122 1335 aa14.66□□□□□ -0.06
SS18-202ENST00000269138 CCDC85CA6NKD9 419 aa14.66□□□□□ -0.06
SS18-202ENST00000269138 EDNRBP24530 442 aa14.66□□□□□ -0.06
SS18-202ENST00000269138 MRPL12P52815 198 aaKnown RBP14.66□□□□□ -0.06
SS18-202ENST00000269138 ARHGEF16Q5VV41 709 aa14.66□□□□□ -0.06
SS18-202ENST00000269138 IL31RAQ8NI17 732 aa14.66□□□□□ -0.06
SS18-202ENST00000269138 ZFP91Q96JP5 570 aaPredicted RBP14.66□□□□□ -0.06
SS18-202ENST00000269138 ZMYND12Q9H0C1 365 aa14.66□□□□□ -0.06
SS18-202ENST00000269138 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.66□□□□□ -0.06
SS18-202ENST00000269138 HMX1Q9NP08 348 aaPredicted RBP14.66□□□□□ -0.06
SS18-202ENST00000269138 TMEM260Q9NX78 707 aa14.66□□□□□ -0.06
SS18-202ENST00000269138 ESYT2A0FGR8 921 aa14.65□□□□□ -0.06
SS18-202ENST00000269138 CNGA1P29973 690 aa14.65□□□□□ -0.06
SS18-202ENST00000269138 FOSBP53539 338 aa14.65□□□□□ -0.06
SS18-202ENST00000269138 PDE4DQ08499 809 aa14.65□□□□□ -0.06
SS18-202ENST00000269138 ACVR2BQ13705 512 aa14.65□□□□□ -0.06
SS18-202ENST00000269138 FBXO16Q8IX29 292 aaPredicted RBP14.65□□□□□ -0.06
SS18-202ENST00000269138 PGBD1Q96JS3 809 aa14.65□□□□□ -0.06
SS18-202ENST00000269138 PDCD2LQ9BRP1 358 aa14.65□□□□□ -0.06
SS18-202ENST00000269138 LLPHQ9BRT6 129 aaKnown RBP14.65□□□□□ -0.06
SS18-202ENST00000269138 ALG1Q9BT22 464 aa14.65□□□□□ -0.06
SS18-202ENST00000269138 SH3GLB2Q9NR46 395 aa14.65□□□□□ -0.06
SS18-202ENST00000269138 ZHX1Q9UKY1 873 aaPredicted RBP14.65□□□□□ -0.06
SS18-202ENST00000269138 KCNJ14Q9UNX9 436 aa14.65□□□□□ -0.06
SS18-202ENST00000269138 CNPY2Q9Y2B0 182 aa14.65□□□□□ -0.06
SS18-202ENST00000269138 NR3C2P08235 984 aa14.64□□□□□ -0.07
SS18-202ENST00000269138 MYCLP12524 364 aaPredicted RBP14.64□□□□□ -0.07
SS18-202ENST00000269138 NLRP5P59047 1200 aa14.64□□□□□ -0.07
SS18-202ENST00000269138 JAKMIP3Q5VZ66 844 aa14.64□□□□□ -0.07
SS18-202ENST00000269138 ANO1Q5XXA6 986 aa14.64□□□□□ -0.07
SS18-202ENST00000269138 RASGRP4Q8TDF6 673 aa14.64□□□□□ -0.07
SS18-202ENST00000269138 CCDC12Q8WUD4 166 aaPredicted RBP14.64□□□□□ -0.07
SS18-202ENST00000269138 DEFB118Q96PH6 123 aa14.64□□□□□ -0.07
SS18-202ENST00000269138 ABHD16BQ9H3Z7 469 aa14.64□□□□□ -0.07
SS18-202ENST00000269138 C6orf50Q9HD87 102 aa14.64□□□□□ -0.07
SS18-202ENST00000269138 PAK6Q9NQU5 681 aaPredicted RBP14.64□□□□□ -0.07
SS18-202ENST00000269138 PDGFCQ9NRA1 345 aa14.64□□□□□ -0.07
SS18-202ENST00000269138 PCDHA6Q9UN73 950 aa14.64□□□□□ -0.07
SS18-202ENST00000269138 PCDHA8Q9Y5H6 950 aa14.64□□□□□ -0.07
SS18-202ENST00000269138 CENPFP49454 3210 aa14.64□□□□□ -0.07
SS18-202ENST00000269138 RBBP6Q7Z6E9 1792 aaKnown RBP14.64□□□□□ -0.07
SS18-202ENST00000269138 LOC102724159A0A0B4J2E5 919 aa14.63□□□□□ -0.07
SS18-202ENST00000269138 POTEFA5A3E0 1075 aa14.63□□□□□ -0.07
SS18-202ENST00000269138 CLK2P49760 499 aaKnown RBP14.63□□□□□ -0.07
SS18-202ENST00000269138 PGM5Q15124 567 aa14.63□□□□□ -0.07
SS18-202ENST00000269138 PWP2Q15269 919 aaKnown RBP14.63□□□□□ -0.07
SS18-202ENST00000269138 NPY5RQ15761 445 aa14.63□□□□□ -0.07
SS18-202ENST00000269138 TMEM63BQ5T3F8 832 aa14.63□□□□□ -0.07
SS18-202ENST00000269138 TAPT1Q6NXT6 567 aa14.63□□□□□ -0.07
SS18-202ENST00000269138 CCDC148Q8NFR7 591 aa14.63□□□□□ -0.07
SS18-202ENST00000269138 LENG1Q96BZ8 264 aaPredicted RBP14.63□□□□□ -0.07
SS18-202ENST00000269138 IWS1Q96ST2 819 aa14.63□□□□□ -0.07
SS18-202ENST00000269138 NRBP1Q9UHY1 535 aa14.63□□□□□ -0.07
SS18-202ENST00000269138 FRMPD4Q14CM0 1322 aa14.63□□□□□ -0.07
SS18-202ENST00000269138 SEPT4O43236 478 aa14.62□□□□□ -0.07
SS18-202ENST00000269138 ADCY6O43306 1168 aa14.62□□□□□ -0.07
SS18-202ENST00000269138 GJB1P08034 283 aa14.62□□□□□ -0.07
SS18-202ENST00000269138 PTGS1P23219 599 aa14.62□□□□□ -0.07
SS18-202ENST00000269138 SOX10P56693 466 aa14.62□□□□□ -0.07
SS18-202ENST00000269138 CCDC144BQ3MJ40 725 aa14.62□□□□□ -0.07
SS18-202ENST00000269138 LHX8Q68G74 356 aa14.62□□□□□ -0.07
SS18-202ENST00000269138 VSIG10LQ86VR7 867 aa14.62□□□□□ -0.07
SS18-202ENST00000269138 WASF1Q92558 559 aa14.62□□□□□ -0.07
SS18-202ENST00000269138 PHF20Q9BVI0 1012 aa14.62□□□□□ -0.07
SS18-202ENST00000269138 TMEM106CQ9BVX2 250 aa14.62□□□□□ -0.07
SS18-202ENST00000269138 GLT8D2Q9H1C3 349 aa14.62□□□□□ -0.07
SS18-202ENST00000269138 DDX20Q9UHI6 824 aaKnown RBP14.62□□□□□ -0.07
SS18-202ENST00000269138 MCM3APO60318 1980 aa14.62□□□□□ -0.07
SS18-202ENST00000269138 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.61□□□□□ -0.07
SS18-202ENST00000269138 SPDYE3A6NKU9 549 aa14.61□□□□□ -0.07
SS18-202ENST00000269138 B4DLN1 442 aa14.61□□□□□ -0.07
SS18-202ENST00000269138 GNA11P29992 359 aa14.61□□□□□ -0.07
SS18-202ENST00000269138 ADCYAP1R1P41586 468 aa14.61□□□□□ -0.07
SS18-202ENST00000269138 MRPS9P82933 396 aaKnown RBP14.61□□□□□ -0.07
SS18-202ENST00000269138 STXBP2Q15833 593 aa14.61□□□□□ -0.07
SS18-202ENST00000269138 REXO1Q8N1G1 1221 aaKnown RBP14.61□□□□□ -0.07
SS18-202ENST00000269138 SNX21Q969T3 373 aa14.61□□□□□ -0.07
SS18-202ENST00000269138 MPHOSPH6Q99547 160 aaKnown RBP14.61□□□□□ -0.07
SS18-202ENST00000269138 ANO3Q9BYT9 981 aa14.61□□□□□ -0.07
SS18-202ENST00000269138 VTA1Q9NP79 307 aa14.61□□□□□ -0.07
SS18-202ENST00000269138 PCDHA4Q9UN74 947 aa14.61□□□□□ -0.07
SS18-202ENST00000269138 EIF3JO75822 258 aaKnown RBP14.61□□□□□ -0.07
SS18-202ENST00000269138 RGS20O76081 388 aa14.61□□□□□ -0.07
SS18-202ENST00000269138 SGPL1O95470 568 aa14.61□□□□□ -0.07
SS18-202ENST00000269138 EN2P19622 333 aaPredicted RBP14.61□□□□□ -0.07
SS18-202ENST00000269138 CCND2P30279 289 aa14.61□□□□□ -0.07
SS18-202ENST00000269138 HMGN5P82970 282 aaKnown RBP14.61□□□□□ -0.07
SS18-202ENST00000269138 GUCY1B3Q02153 619 aa14.61□□□□□ -0.07
SS18-202ENST00000269138 CUL4AQ13619 759 aa14.61□□□□□ -0.07
SS18-202ENST00000269138 SEPT14Q6ZU15 432 aa14.61□□□□□ -0.07
SS18-202ENST00000269138 BLIDQ8IZY5 108 aa14.61□□□□□ -0.07
SS18-202ENST00000269138 OXER1Q8TDS5 423 aa14.61□□□□□ -0.07
SS18-202ENST00000269138 U2AF1L4Q8WU68 220 aaKnown RBP14.61□□□□□ -0.07
SS18-202ENST00000269138 RTEL1Q9NZ71 1219 aa14.61□□□□□ -0.07
SS18-202ENST00000269138 FAM184BQ9ULE4 1060 aa14.61□□□□□ -0.07
SS18-202ENST00000269138 RBM47A0AV96 593 aaKnown RBP14.6□□□□□ -0.07
SS18-202ENST00000269138 K7ELQ4 463 aaPredicted RBP14.6□□□□□ -0.07
SS18-202ENST00000269138 M0R2N6 131 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms