RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 IQCEQ6IPM2 695 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 CNNM4Q6P4Q7 775 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 CLEC10AQ8IUN9 316 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 LRRC47Q8N1G4 583 aaKnown RBP14.05□□□□□ -0.16
LIG1-201ENST00000263274 SNX29Q8TEQ0 813 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 DNAJC7Q99615 494 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 LRRC1Q9BTT6 524 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 CAPN6Q9Y6Q1 641 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 A0A1W2PQC6 194 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 GOLGA6CA6NDK9 693 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 GOLGA6DP0CG33 693 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 REXO1Q8N1G1 1221 aaKnown RBP14.05□□□□□ -0.16
LIG1-201ENST00000263274 ZNF507Q8TCN5 953 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 ALS2CR12Q96Q35 445 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 EFCC1Q9HA90 598 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 KBTBD4Q9NVX7 518 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 GOLGA6AQ9NYA3 693 aa14.05□□□□□ -0.16
LIG1-201ENST00000263274 KIF11P52732 1056 aa14.04□□□□□ -0.16
LIG1-201ENST00000263274 GRM4Q14833 912 aa14.04□□□□□ -0.16
LIG1-201ENST00000263274 CALCRLQ16602 461 aa14.04□□□□□ -0.16
LIG1-201ENST00000263274 KRT25Q7Z3Z0 450 aa14.04□□□□□ -0.16
LIG1-201ENST00000263274 LINC00116Q8NCU8 138 aa14.04□□□□□ -0.16
LIG1-201ENST00000263274 FBXO41Q8TF61 875 aa14.04□□□□□ -0.16
LIG1-201ENST00000263274 NDST4Q9H3R1 872 aa14.04□□□□□ -0.16
LIG1-201ENST00000263274 DMGDHQ9UI17 866 aaKnown RBP14.04□□□□□ -0.16
LIG1-201ENST00000263274 PCDHA13Q9Y5I0 950 aa14.04□□□□□ -0.16
LIG1-201ENST00000263274 EP400Q96L91 3159 aa14.04□□□□□ -0.16
LIG1-201ENST00000263274 NUP98P52948 1817 aa14.04□□□□□ -0.16
LIG1-201ENST00000263274 EPHB6O15197 1021 aa14.04□□□□□ -0.16
LIG1-201ENST00000263274 KCNB1Q14721 858 aa14.04□□□□□ -0.16
LIG1-201ENST00000263274 TMEM266Q2M3C6 531 aa14.04□□□□□ -0.16
LIG1-201ENST00000263274 KCTD16Q68DU8 428 aa14.04□□□□□ -0.16
LIG1-201ENST00000263274 FAM76AQ8TAV0 307 aa14.04□□□□□ -0.16
LIG1-201ENST00000263274 CCSER1Q9C0I3 900 aa14.04□□□□□ -0.16
LIG1-201ENST00000263274 MED4Q9NPJ6 270 aa14.04□□□□□ -0.16
LIG1-201ENST00000263274 AFF2P51816 1311 aa14.04□□□□□ -0.16
LIG1-201ENST00000263274 MPHOSPH10O00566 681 aaKnown RBP14.03□□□□□ -0.16
LIG1-201ENST00000263274 VAV2P52735 878 aa14.03□□□□□ -0.16
LIG1-201ENST00000263274 GFPT1Q06210 699 aaPredicted RBP14.03□□□□□ -0.16
LIG1-201ENST00000263274 SLC35G1Q2M3R5 365 aa14.03□□□□□ -0.16
LIG1-201ENST00000263274 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.03□□□□□ -0.16
LIG1-201ENST00000263274 NOC3LQ8WTT2 800 aaKnown RBP14.03□□□□□ -0.16
LIG1-201ENST00000263274 HPCAL4Q9UM19 191 aa14.03□□□□□ -0.16
LIG1-201ENST00000263274 LRRC53A6NM62 1247 aa14.03□□□□□ -0.16
LIG1-201ENST00000263274 TDP2O95551 362 aa14.03□□□□□ -0.16
LIG1-201ENST00000263274 SRLQ86TD4 932 aa14.03□□□□□ -0.16
LIG1-201ENST00000263274 UBR2Q8IWV8 1755 aa14.03□□□□□ -0.16
LIG1-201ENST00000263274 CHD4Q14839 1912 aa14.03□□□□□ -0.16
LIG1-201ENST00000263274 USP17L5A8MUK1 530 aa14.03□□□□□ -0.16
LIG1-201ENST00000263274 BTDP43251 543 aa14.03□□□□□ -0.16
LIG1-201ENST00000263274 MUM1L1Q5H9M0 696 aa14.03□□□□□ -0.16
LIG1-201ENST00000263274 KRT79Q5XKE5 535 aa14.03□□□□□ -0.16
LIG1-201ENST00000263274 PTF1AQ7RTS3 328 aa14.03□□□□□ -0.16
LIG1-201ENST00000263274 GLIS3Q8NEA6 775 aa14.03□□□□□ -0.16
LIG1-201ENST00000263274 MS4A14Q96JA4 679 aa14.03□□□□□ -0.16
LIG1-201ENST00000263274 SEMA6BQ9H3T3 888 aa14.03□□□□□ -0.16
LIG1-201ENST00000263274 QTRT2Q9H974 415 aaKnown RBP14.03□□□□□ -0.16
LIG1-201ENST00000263274 ESYT3A0FGR9 886 aa14.02□□□□□ -0.16
LIG1-201ENST00000263274 EIF3CLB5ME19 914 aaKnown RBP14.02□□□□□ -0.16
LIG1-201ENST00000263274 ZEB2O60315 1214 aa14.02□□□□□ -0.16
LIG1-201ENST00000263274 CDK8P49336 464 aa14.02□□□□□ -0.16
LIG1-201ENST00000263274 NFIXQ14938 502 aa14.02□□□□□ -0.16
LIG1-201ENST00000263274 UBE2SQ16763 222 aa14.02□□□□□ -0.16
LIG1-201ENST00000263274 TRIM58Q8NG06 486 aa14.02□□□□□ -0.16
LIG1-201ENST00000263274 EIF3CQ99613 913 aaKnown RBP14.02□□□□□ -0.16
LIG1-201ENST00000263274 TSG101Q99816 390 aa14.02□□□□□ -0.16
LIG1-201ENST00000263274 MYH3P11055 1940 aa14.02□□□□□ -0.16
LIG1-201ENST00000263274 MYMKA6NI61 221 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 LDHCP07864 332 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 ATP1A2P50993 1020 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 RAPGEF1Q13905 1077 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 VWA3BQ502W6 1294 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 LRRC31Q6UY01 552 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 EHD4Q9H223 541 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 SH3GLB2Q9NR46 395 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 PACSIN2Q9UNF0 486 aaPredicted RBP14.02□□□□□ -0.17
LIG1-201ENST00000263274 SLIT2O94813 1529 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 TAF1P21675 1872 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 C6orf229H3BNL8 230 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 FTCDO95954 541 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 FGRP09769 529 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 CCT5P48643 541 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 GUCY2FP51841 1108 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 APBA1Q02410 837 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 SBK1Q52WX2 424 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 CCNI2Q6ZMN8 369 aaPredicted RBP14.02□□□□□ -0.17
LIG1-201ENST00000263274 CCDC170Q8IYT3 715 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 KIAA0895Q8NCT3 520 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 WDR66Q8TBY9 1149 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 LARP4BQ92615 738 aaKnown RBP14.02□□□□□ -0.17
LIG1-201ENST00000263274 CEP95Q96GE4 821 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 FAM107BQ9H098 131 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 ZNF287Q9HBT7 754 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 ARHGAP20Q9P2F6 1191 aa14.02□□□□□ -0.17
LIG1-201ENST00000263274 ECM29Q5VYK3 1845 aa14.01□□□□□ -0.17
LIG1-201ENST00000263274 ZNF263O14978 683 aa14.01□□□□□ -0.17
LIG1-201ENST00000263274 RASA1P20936 1047 aa14.01□□□□□ -0.17
LIG1-201ENST00000263274 SLC16A2P36021 539 aa14.01□□□□□ -0.17
LIG1-201ENST00000263274 PAPD7Q5XG87 772 aaKnown RBP14.01□□□□□ -0.17
LIG1-201ENST00000263274 C8orf74Q6P047 294 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms