RNA–Protein interactions for RNA: ENST00000245479.2

SOX9-201, Transcript of SRY-box 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SOX9, Length 3,935 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9-201ENST00000245479 C6orf50Q9HD87 102 aa12.75□□□□□ -0.37
SOX9-201ENST00000245479 RBM28Q9NW13 759 aaKnown RBP12.75□□□□□ -0.37
SOX9-201ENST00000245479 HGSO14964 777 aaPredicted RBP12.74□□□□□ -0.37
SOX9-201ENST00000245479 VIMP08670 466 aaKnown RBP12.74□□□□□ -0.37
SOX9-201ENST00000245479 COPB1P53618 953 aaKnown RBP12.74□□□□□ -0.37
SOX9-201ENST00000245479 ACTN3Q08043 901 aaPredicted RBP12.74□□□□□ -0.37
SOX9-201ENST00000245479 TXNRD1Q16881 649 aa12.74□□□□□ -0.37
SOX9-201ENST00000245479 RRAGAQ7L523 313 aa12.74□□□□□ -0.37
SOX9-201ENST00000245479 KLHL7Q8IXQ5 586 aa12.74□□□□□ -0.37
SOX9-201ENST00000245479 CCDC43Q96MW1 224 aaKnown RBP12.74□□□□□ -0.37
SOX9-201ENST00000245479 SELENOOQ9BVL4 669 aa12.74□□□□□ -0.37
SOX9-201ENST00000245479 HOMER2Q9NSB8 354 aa12.74□□□□□ -0.37
SOX9-201ENST00000245479 CALML3P27482 149 aa12.74□□□□□ -0.37
SOX9-201ENST00000245479 MAGEA1P43355 309 aa12.74□□□□□ -0.37
SOX9-201ENST00000245479 C2orf54Q08AI8 447 aa12.74□□□□□ -0.37
SOX9-201ENST00000245479 DPYDQ12882 1025 aa12.74□□□□□ -0.37
SOX9-201ENST00000245479 ANKRD2Q9GZV1 360 aa12.74□□□□□ -0.37
SOX9-201ENST00000245479 TOM1O60784 492 aa12.74□□□□□ -0.37
SOX9-201ENST00000245479 PKN1Q16512 942 aa12.74□□□□□ -0.37
SOX9-201ENST00000245479 FOXR1Q6PIV2 292 aa12.74□□□□□ -0.37
SOX9-201ENST00000245479 ADAT2Q7Z6V5 191 aaKnown RBP12.74□□□□□ -0.37
SOX9-201ENST00000245479 CCDC84Q86UT8 332 aaPredicted RBP12.74□□□□□ -0.37
SOX9-201ENST00000245479 CACNA2D3Q8IZS8 1091 aa12.74□□□□□ -0.37
SOX9-201ENST00000245479 TSG101Q99816 390 aa12.74□□□□□ -0.37
SOX9-201ENST00000245479 PLA2G12BQ9BX93 195 aa12.74□□□□□ -0.37
SOX9-201ENST00000245479 NSRP1Q9H0G5 558 aaKnown RBP12.74□□□□□ -0.37
SOX9-201ENST00000245479 INTS13Q9NVM9 706 aa12.74□□□□□ -0.37
SOX9-201ENST00000245479 CLRN2A0PK11 232 aa12.73□□□□□ -0.37
SOX9-201ENST00000245479 TDP2O95551 362 aa12.73□□□□□ -0.37
SOX9-201ENST00000245479 HOXA13P31271 388 aaPredicted RBP12.73□□□□□ -0.37
SOX9-201ENST00000245479 RAPGEF1Q13905 1077 aa12.73□□□□□ -0.37
SOX9-201ENST00000245479 HERC4Q5GLZ8 1057 aaPredicted RBP12.73□□□□□ -0.37
SOX9-201ENST00000245479 TMC4Q7Z404 712 aa12.73□□□□□ -0.37
SOX9-201ENST00000245479 REXO1Q8N1G1 1221 aaKnown RBP12.73□□□□□ -0.37
SOX9-201ENST00000245479 TC2NQ8N9U0 490 aa12.73□□□□□ -0.37
SOX9-201ENST00000245479 RIOK1Q9BRS2 568 aaKnown RBP12.73□□□□□ -0.37
SOX9-201ENST00000245479 IFIH1Q9BYX4 1025 aaKnown RBP12.73□□□□□ -0.37
SOX9-201ENST00000245479 TCEAL9Q9UHQ7 104 aa12.73□□□□□ -0.37
SOX9-201ENST00000245479 DUSP10Q9Y6W6 482 aa12.73□□□□□ -0.37
SOX9-201ENST00000245479 CLTAP09496 248 aa12.73□□□□□ -0.37
SOX9-201ENST00000245479 ERCC5P28715 1186 aaPredicted RBP12.73□□□□□ -0.37
SOX9-201ENST00000245479 CDK8P49336 464 aa12.73□□□□□ -0.37
SOX9-201ENST00000245479 SF3B2Q13435 895 aaKnown RBP12.73□□□□□ -0.37
SOX9-201ENST00000245479 NONOQ15233 471 aaKnown RBP eCLIP12.73□□□□□ -0.37
SOX9-201ENST00000245479 AGPAT5Q9NUQ2 364 aa12.73□□□□□ -0.37
SOX9-201ENST00000245479 MFAP3LO75121 409 aa12.73□□□□□ -0.37
SOX9-201ENST00000245479 SERPINB2P05120 415 aa12.73□□□□□ -0.37
SOX9-201ENST00000245479 SLC7A5Q01650 507 aa12.73□□□□□ -0.37
SOX9-201ENST00000245479 TMEM266Q2M3C6 531 aa12.73□□□□□ -0.37
SOX9-201ENST00000245479 BEND6Q5SZJ8 279 aaPredicted RBP12.73□□□□□ -0.37
SOX9-201ENST00000245479 LRRC31Q6UY01 552 aa12.73□□□□□ -0.37
SOX9-201ENST00000245479 ABCC12Q96J65 1359 aa12.73□□□□□ -0.37
SOX9-201ENST00000245479 COL5A2P05997 1499 aaPredicted RBP12.73□□□□□ -0.37
SOX9-201ENST00000245479 PRPF3O43395 683 aaKnown RBP12.72□□□□□ -0.37
SOX9-201ENST00000245479 ACTN4O43707 911 aaKnown RBP12.72□□□□□ -0.37
SOX9-201ENST00000245479 MYCNP04198 464 aaPredicted RBP12.72□□□□□ -0.37
SOX9-201ENST00000245479 SEPT7Q16181 437 aaKnown RBP12.72□□□□□ -0.37
SOX9-201ENST00000245479 CALCRLQ16602 461 aa12.72□□□□□ -0.37
SOX9-201ENST00000245479 SHROOM1Q2M3G4 852 aaPredicted RBP12.72□□□□□ -0.37
SOX9-201ENST00000245479 KRT79Q5XKE5 535 aa12.72□□□□□ -0.37
SOX9-201ENST00000245479 VPS36Q86VN1 386 aa12.72□□□□□ -0.37
SOX9-201ENST00000245479 PNKPQ96T60 521 aa12.72□□□□□ -0.37
SOX9-201ENST00000245479 EP400Q96L91 3159 aa12.72□□□□□ -0.37
SOX9-201ENST00000245479 SLC8A1P32418 973 aa12.72□□□□□ -0.37
SOX9-201ENST00000245479 PMS1P54277 932 aaKnown RBP12.72□□□□□ -0.37
SOX9-201ENST00000245479 GPSM2P81274 684 aa12.72□□□□□ -0.37
SOX9-201ENST00000245479 APBA1Q02410 837 aa12.72□□□□□ -0.37
SOX9-201ENST00000245479 NNTQ13423 1086 aa12.72□□□□□ -0.37
SOX9-201ENST00000245479 CFAP221Q4G0U5 840 aa12.72□□□□□ -0.37
SOX9-201ENST00000245479 AP1ARQ63HQ0 302 aa12.72□□□□□ -0.37
SOX9-201ENST00000245479 RUFY4Q6ZNE9 571 aa12.72□□□□□ -0.37
SOX9-201ENST00000245479 CPXCR1Q8N123 301 aa12.72□□□□□ -0.37
SOX9-201ENST00000245479 TRIM58Q8NG06 486 aa12.72□□□□□ -0.37
SOX9-201ENST00000245479 COG1Q8WTW3 980 aa12.72□□□□□ -0.37
SOX9-201ENST00000245479 FAM184BQ9ULE4 1060 aa12.72□□□□□ -0.37
SOX9-201ENST00000245479 PCDHAC2Q9Y5I4 1007 aa12.72□□□□□ -0.37
SOX9-201ENST00000245479 RIC1Q4ADV7 1423 aa12.72□□□□□ -0.37
SOX9-201ENST00000245479 SETD1AO15047 1707 aaKnown RBP12.72□□□□□ -0.37
SOX9-201ENST00000245479 KRT71Q3SY84 523 aa12.72□□□□□ -0.37
SOX9-201ENST00000245479 CCDC174Q6PII3 467 aa12.72□□□□□ -0.37
SOX9-201ENST00000245479 WDR66Q8TBY9 1149 aa12.72□□□□□ -0.37
SOX9-201ENST00000245479 FERMT2Q96AC1 680 aa12.72□□□□□ -0.37
SOX9-201ENST00000245479 NPHP3-ACAD11A0A0J9YXS1 232 aa12.71□□□□□ -0.37
SOX9-201ENST00000245479 TTC26A0AVF1 554 aa12.71□□□□□ -0.37
SOX9-201ENST00000245479 ZNF185O15231 689 aa12.71□□□□□ -0.37
SOX9-201ENST00000245479 STAT3P40763 770 aa12.71□□□□□ -0.37
SOX9-201ENST00000245479 SLC1A4P43007 532 aa12.71□□□□□ -0.37
SOX9-201ENST00000245479 SPAG5Q96R06 1193 aa12.71□□□□□ -0.37
SOX9-201ENST00000245479 TUBGCP2Q9BSJ2 902 aa12.71□□□□□ -0.37
SOX9-201ENST00000245479 KCNQ5Q9NR82 932 aa12.71□□□□□ -0.37
SOX9-201ENST00000245479 RNF225M0QZC1 329 aaPredicted RBP12.71□□□□□ -0.37
SOX9-201ENST00000245479 NDUFA10O95299 355 aa12.71□□□□□ -0.37
SOX9-201ENST00000245479 CFBP00751 764 aa12.71□□□□□ -0.37
SOX9-201ENST00000245479 HNRNPH1P31943 449 aaKnown RBP12.71□□□□□ -0.37
SOX9-201ENST00000245479 GUCY2DQ02846 1103 aa12.71□□□□□ -0.37
SOX9-201ENST00000245479 PRKG1Q13976 671 aa12.71□□□□□ -0.37
SOX9-201ENST00000245479 PRR16Q569H4 304 aa12.71□□□□□ -0.37
SOX9-201ENST00000245479 NOA1Q8NC60 698 aaKnown RBP12.71□□□□□ -0.37
SOX9-201ENST00000245479 EHD2Q9NZN4 543 aa12.71□□□□□ -0.37
SOX9-201ENST00000245479 ARPP21Q9UBL0 812 aaPredicted RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms