RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 PCDHB6Q9Y5E3 794 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 ATAD5Q96QE3 1844 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 CYP2C19P33261 490 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 MAP2K5Q13163 448 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 IRF5Q13568 498 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 KCTD2Q14681 263 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 MFSD14CQ5VZR4 134 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 KCTD1Q719H9 257 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 RASGRP2Q7LDG7 609 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 NEDD1Q8NHV4 660 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 SLF1Q9BQI6 1058 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 NYAP2Q9P242 653 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 PES1O00541 588 aaKnown RBP9.83□□□□□ -0.84
VPS4B-201ENST00000238497 POLR2DO15514 142 aaKnown RBP9.83□□□□□ -0.84
VPS4B-201ENST00000238497 ZBED4O75132 1171 aa9.83□□□□□ -0.84
VPS4B-201ENST00000238497 ADORA2AP29274 412 aa9.83□□□□□ -0.84
VPS4B-201ENST00000238497 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.83□□□□□ -0.84
VPS4B-201ENST00000238497 BRAPQ7Z569 592 aa9.83□□□□□ -0.84
VPS4B-201ENST00000238497 DHX58Q96C10 678 aa9.83□□□□□ -0.84
VPS4B-201ENST00000238497 KAT14Q9H8E8 782 aa9.83□□□□□ -0.84
VPS4B-201ENST00000238497 FAM217BQ9NTX9 383 aaPredicted RBP9.83□□□□□ -0.84
VPS4B-201ENST00000238497 RTEL1Q9NZ71 1219 aa9.83□□□□□ -0.84
VPS4B-201ENST00000238497 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.83□□□□□ -0.84
VPS4B-201ENST00000238497 PTPRFP10586 1907 aa9.83□□□□□ -0.84
VPS4B-201ENST00000238497 CNMDO75829 334 aa9.83□□□□□ -0.84
VPS4B-201ENST00000238497 SERPINC1P01008 464 aa9.83□□□□□ -0.84
VPS4B-201ENST00000238497 BMP3P12645 472 aa9.83□□□□□ -0.84
VPS4B-201ENST00000238497 PTPREP23469 700 aa9.83□□□□□ -0.84
VPS4B-201ENST00000238497 MCM7P33993 719 aa9.83□□□□□ -0.84
VPS4B-201ENST00000238497 SNAP25P60880 206 aa9.83□□□□□ -0.84
VPS4B-201ENST00000238497 NOLC1Q14978 699 aaKnown RBP eCLIP9.83□□□□□ -0.84
VPS4B-201ENST00000238497 SNRNP48Q6IEG0 339 aaKnown RBP9.83□□□□□ -0.84
VPS4B-201ENST00000238497 POTEEQ6S8J3 1075 aa9.83□□□□□ -0.84
VPS4B-201ENST00000238497 APBA2Q99767 749 aa9.83□□□□□ -0.84
VPS4B-201ENST00000238497 RAVER2Q9HCJ3 691 aaKnown RBP9.83□□□□□ -0.84
VPS4B-201ENST00000238497 SGPL1O95470 568 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 PGK2P07205 417 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 FCER1AP12319 257 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 STX17P56962 302 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 TMEM132BQ14DG7 1078 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 CCDC174Q6PII3 467 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 PIK3AP1Q6ZUJ8 805 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 USP49Q70CQ1 688 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 MB21D1Q8N884 522 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 PPP1R9AQ9ULJ8 1098 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 UQCRHLA0A096LP55 91 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 UQCRHP07919 91 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 SNW1Q13573 536 aaKnown RBP9.82□□□□□ -0.84
VPS4B-201ENST00000238497 HEATR3Q7Z4Q2 680 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 NOSTRINQ8IVI9 506 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 FAM177A1Q8N128 213 aaPredicted RBP9.82□□□□□ -0.84
VPS4B-201ENST00000238497 WASF1Q92558 559 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 FUCA2Q9BTY2 467 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 NAT10Q9H0A0 1025 aaKnown RBP9.82□□□□□ -0.84
VPS4B-201ENST00000238497 GPCPD1Q9NPB8 672 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 SLC5A4Q9NY91 659 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 VWA3AA6NCI4 1184 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 VWA5AO00534 786 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 GJA8P48165 433 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 TRMT44Q8IYL2 757 aaKnown RBP9.82□□□□□ -0.84
VPS4B-201ENST00000238497 TMTC2Q8N394 836 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 PRPF38AQ8NAV1 312 aaKnown RBP9.82□□□□□ -0.84
VPS4B-201ENST00000238497 STAG1Q8WVM7 1258 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 PAWRQ96IZ0 340 aaKnown RBP9.82□□□□□ -0.84
VPS4B-201ENST00000238497 MMP19Q99542 508 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 IFNKQ9P0W0 207 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 KCNH3Q9ULD8 1083 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 MYH7P12883 1935 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 RPTORQ8N122 1335 aa9.82□□□□□ -0.84
VPS4B-201ENST00000238497 PHIPQ8WWQ0 1821 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 SLC15A5A6NIM6 579 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 DEXIO95424 95 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 CACNB2Q08289 660 aaPredicted RBP9.81□□□□□ -0.84
VPS4B-201ENST00000238497 TPD52L1Q16890 204 aaPredicted RBP9.81□□□□□ -0.84
VPS4B-201ENST00000238497 LONRF3Q496Y0 759 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 ANKRD35Q8N283 1001 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 TMX1Q9H3N1 280 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 KIAA1468Q9P260 1216 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 MAPK8IP1Q9UQF2 711 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 FRMPD2Q68DX3 1309 aaPredicted RBP9.81□□□□□ -0.84
VPS4B-201ENST00000238497 CCND3P30281 292 aaPredicted RBP9.81□□□□□ -0.84
VPS4B-201ENST00000238497 LIFRP42702 1097 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 GOLGA8FQ08AF8 430 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 GOLGA8DPQ0D2H9 430 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 SLC39A14Q15043 492 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 NTRK3Q16288 839 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 PRAMEF19Q5SWL8 479 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 TMC6Q7Z403 805 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 EEF2KMTQ96G04 330 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 TEX13BQ9BXU2 312 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 BRMS1Q9HCU9 246 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 CTAGE5O15320 804 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 IFNAR1P17181 557 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 SLC16A2P36021 539 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 ZNF75DP51815 510 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 STAT2P52630 851 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 FMR1NBQ8N0W7 255 aaPredicted RBP9.81□□□□□ -0.84
VPS4B-201ENST00000238497 STAG2Q8N3U4 1231 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 NPLOC4Q8TAT6 608 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 HTATIP2Q9BUP3 242 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms