RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 C15orf52Q6ZUT6 534 aaKnown RBP20.84■□□□□ 0.93
CPSF3-201ENST00000238112 UNC13DQ70J99 1090 aa20.84■□□□□ 0.93
CPSF3-201ENST00000238112 DUSP10Q9Y6W6 482 aa20.84■□□□□ 0.93
CPSF3-201ENST00000238112 TNRC6CQ9HCJ0 1690 aaKnown RBP20.84■□□□□ 0.93
CPSF3-201ENST00000238112 SBF2Q86WG5 1849 aa20.84■□□□□ 0.93
CPSF3-201ENST00000238112 PVALEFA0A1B0GWK0 134 aa20.83■□□□□ 0.93
CPSF3-201ENST00000238112 USP17L5A8MUK1 530 aa20.83■□□□□ 0.93
CPSF3-201ENST00000238112 hCG_1984214I3L0E3 225 aa20.83■□□□□ 0.93
CPSF3-201ENST00000238112 RFC4P35249 363 aa20.83■□□□□ 0.93
CPSF3-201ENST00000238112 GRB10Q13322 594 aa20.83■□□□□ 0.93
CPSF3-201ENST00000238112 AMIGO3Q86WK7 504 aa20.83■□□□□ 0.93
CPSF3-201ENST00000238112 ZNF713Q8N859 430 aaPredicted RBP20.83■□□□□ 0.93
CPSF3-201ENST00000238112 CNBD1Q8NA66 436 aa20.83■□□□□ 0.93
CPSF3-201ENST00000238112 LARP4BQ92615 738 aaKnown RBP20.83■□□□□ 0.93
CPSF3-201ENST00000238112 RAB34Q9BZG1 259 aa20.83■□□□□ 0.93
CPSF3-201ENST00000238112 VIPAS39Q9H9C1 493 aa20.83■□□□□ 0.93
CPSF3-201ENST00000238112 CWC15Q9P013 229 aaKnown RBP20.83■□□□□ 0.93
CPSF3-201ENST00000238112 MYMKA6NI61 221 aa20.83■□□□□ 0.92
CPSF3-201ENST00000238112 LEKR1Q6ZMV7 388 aa20.83■□□□□ 0.92
CPSF3-201ENST00000238112 MTMR9Q96QG7 549 aa20.83■□□□□ 0.92
CPSF3-201ENST00000238112 NDST4Q9H3R1 872 aa20.83■□□□□ 0.92
CPSF3-201ENST00000238112 CD209Q9NNX6 404 aa20.83■□□□□ 0.92
CPSF3-201ENST00000238112 PLAGL2Q9UPG8 496 aa20.83■□□□□ 0.92
CPSF3-201ENST00000238112 FXR2P51116 673 aaKnown RBP eCLIP20.82■□□□□ 0.92
CPSF3-201ENST00000238112 C2CD5Q86YS7 1000 aa20.82■□□□□ 0.92
CPSF3-201ENST00000238112 TRIM58Q8NG06 486 aa20.82■□□□□ 0.92
CPSF3-201ENST00000238112 IFIH1Q9BYX4 1025 aaKnown RBP20.82■□□□□ 0.92
CPSF3-201ENST00000238112 DEF6Q9H4E7 631 aa20.82■□□□□ 0.92
CPSF3-201ENST00000238112 RIOX1Q9H6W3 641 aa20.82■□□□□ 0.92
CPSF3-201ENST00000238112 BLOC1S4Q9NUP1 217 aa20.82■□□□□ 0.92
CPSF3-201ENST00000238112 FRMPD2Q68DX3 1309 aaPredicted RBP20.82■□□□□ 0.92
CPSF3-201ENST00000238112 NKRFO15226 690 aaKnown RBP eCLIP20.82■□□□□ 0.92
CPSF3-201ENST00000238112 PHACTR2O75167 634 aa20.82■□□□□ 0.92
CPSF3-201ENST00000238112 UFL1O94874 794 aa20.82■□□□□ 0.92
CPSF3-201ENST00000238112 CAPN2P17655 700 aa20.82■□□□□ 0.92
CPSF3-201ENST00000238112 HNRNPH3P31942 346 aaKnown RBP20.82■□□□□ 0.92
CPSF3-201ENST00000238112 ACTN2P35609 894 aa20.82■□□□□ 0.92
CPSF3-201ENST00000238112 ADCY7P51828 1080 aa20.82■□□□□ 0.92
CPSF3-201ENST00000238112 GPSM2P81274 684 aa20.82■□□□□ 0.92
CPSF3-201ENST00000238112 MAN2A1Q16706 1144 aa20.82■□□□□ 0.92
CPSF3-201ENST00000238112 DYMQ7RTS9 669 aa20.82■□□□□ 0.92
CPSF3-201ENST00000238112 SLF2Q8IX21 1173 aa20.82■□□□□ 0.92
CPSF3-201ENST00000238112 FAM207AQ9NSI2 230 aaPredicted RBP20.82■□□□□ 0.92
CPSF3-201ENST00000238112 ZNF185O15231 689 aa20.81■□□□□ 0.92
CPSF3-201ENST00000238112 TACC1O75410 805 aa20.81■□□□□ 0.92
CPSF3-201ENST00000238112 PLEKP08567 350 aaPredicted RBP20.81■□□□□ 0.92
CPSF3-201ENST00000238112 CCDC84Q86UT8 332 aaPredicted RBP20.81■□□□□ 0.92
CPSF3-201ENST00000238112 FNBP4Q8N3X1 1017 aaPredicted RBP20.81■□□□□ 0.92
CPSF3-201ENST00000238112 GUF1Q8N442 669 aaKnown RBP20.81■□□□□ 0.92
CPSF3-201ENST00000238112 RPGRQ92834 1020 aaKnown RBP20.81■□□□□ 0.92
CPSF3-201ENST00000238112 MMRN2Q9H8L6 949 aa20.81■□□□□ 0.92
CPSF3-201ENST00000238112 JRKLQ9Y4A0 524 aa20.81■□□□□ 0.92
CPSF3-201ENST00000238112 ZNF263O14978 683 aa20.81■□□□□ 0.92
CPSF3-201ENST00000238112 CCDC70Q6NSX1 233 aa20.81■□□□□ 0.92
CPSF3-201ENST00000238112 KRT26Q7Z3Y9 468 aa20.81■□□□□ 0.92
CPSF3-201ENST00000238112 PNMA5Q96PV4 448 aa20.81■□□□□ 0.92
CPSF3-201ENST00000238112 SIK3Q9Y2K2 1263 aa20.81■□□□□ 0.92
CPSF3-201ENST00000238112 DDX60LQ5H9U9 1706 aaKnown RBP20.81■□□□□ 0.92
CPSF3-201ENST00000238112 ABCB11O95342 1321 aa20.8■□□□□ 0.92
CPSF3-201ENST00000238112 SLC37A4O43826 429 aa20.8■□□□□ 0.92
CPSF3-201ENST00000238112 PDHBP11177 359 aa20.8■□□□□ 0.92
CPSF3-201ENST00000238112 LRRC63Q05C16 580 aa20.8■□□□□ 0.92
CPSF3-201ENST00000238112 KRT79Q5XKE5 535 aa20.8■□□□□ 0.92
CPSF3-201ENST00000238112 COA7Q96BR5 231 aa20.8■□□□□ 0.92
CPSF3-201ENST00000238112 LRRC27Q9C0I9 530 aa20.8■□□□□ 0.92
CPSF3-201ENST00000238112 ARHGAP20Q9P2F6 1191 aa20.8■□□□□ 0.92
CPSF3-201ENST00000238112 PCDHA13Q9Y5I0 950 aa20.8■□□□□ 0.92
CPSF3-201ENST00000238112 TDP2O95551 362 aa20.79■□□□□ 0.92
CPSF3-201ENST00000238112 KIF11P52732 1056 aa20.79■□□□□ 0.92
CPSF3-201ENST00000238112 RAD51AP2Q09MP3 1159 aa20.79■□□□□ 0.92
CPSF3-201ENST00000238112 MFSD14BQ5SR56 506 aa20.79■□□□□ 0.92
CPSF3-201ENST00000238112 TRAPPC3LQ5T215 181 aa20.79■□□□□ 0.92
CPSF3-201ENST00000238112 SNX29Q8TEQ0 813 aa20.79■□□□□ 0.92
CPSF3-201ENST00000238112 RAD54LQ92698 747 aa20.79■□□□□ 0.92
CPSF3-201ENST00000238112 POTEMA6NI47 508 aa20.79■□□□□ 0.92
CPSF3-201ENST00000238112 ATP2B4P23634 1241 aa20.79■□□□□ 0.92
CPSF3-201ENST00000238112 RHBDL3P58872 404 aa20.79■□□□□ 0.92
CPSF3-201ENST00000238112 PDIA5Q14554 519 aa20.79■□□□□ 0.92
CPSF3-201ENST00000238112 GOLGA6L1Q8N7Z2 621 aa20.79■□□□□ 0.92
CPSF3-201ENST00000238112 TSG101Q99816 390 aa20.79■□□□□ 0.92
CPSF3-201ENST00000238112 SH2D4AQ9H788 454 aa20.79■□□□□ 0.92
CPSF3-201ENST00000238112 GGA1Q9UJY5 639 aa20.79■□□□□ 0.92
CPSF3-201ENST00000238112 SNX12Q9UMY4 172 aa20.79■□□□□ 0.92
CPSF3-201ENST00000238112 PDE2AO00408 941 aaPredicted RBP20.78■□□□□ 0.92
CPSF3-201ENST00000238112 EPHB6O15197 1021 aa20.78■□□□□ 0.92
CPSF3-201ENST00000238112 AKR1B10O60218 316 aa20.78■□□□□ 0.92
CPSF3-201ENST00000238112 IL1R1P14778 569 aa20.78■□□□□ 0.92
CPSF3-201ENST00000238112 NOVP48745 357 aa20.78■□□□□ 0.92
CPSF3-201ENST00000238112 AARSP49588 968 aaKnown RBP eCLIP20.78■□□□□ 0.92
CPSF3-201ENST00000238112 ASPRV1Q53RT3 343 aa20.78■□□□□ 0.92
CPSF3-201ENST00000238112 SMCR8Q8TEV9 937 aaPredicted RBP20.78■□□□□ 0.92
CPSF3-201ENST00000238112 HPCAL4Q9UM19 191 aa20.78■□□□□ 0.92
CPSF3-201ENST00000238112 A0A0U1RQG5 324 aaPredicted RBP20.78■□□□□ 0.92
CPSF3-201ENST00000238112 TULP2O00295 520 aa20.78■□□□□ 0.92
CPSF3-201ENST00000238112 ZMYND10O75800 440 aa20.78■□□□□ 0.92
CPSF3-201ENST00000238112 HOXA7P31268 230 aaPredicted RBP20.78■□□□□ 0.92
CPSF3-201ENST00000238112 EIF4A3P38919 411 aaKnown RBP20.78■□□□□ 0.92
CPSF3-201ENST00000238112 C2orf54Q08AI8 447 aa20.78■□□□□ 0.92
CPSF3-201ENST00000238112 RRAGAQ7L523 313 aa20.78■□□□□ 0.92
CPSF3-201ENST00000238112 COG1Q8WTW3 980 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms