RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 RSPH14Q9UHP6 348 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 MYH7BA7E2Y1 1941 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 KRT14P02533 472 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 CASP5P51878 434 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 CACNB3P54284 484 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 RASSF7Q02833 373 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 CCDC96Q2M329 555 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 KCTD16Q68DU8 428 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 RRAGAQ7L523 313 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 NLRP3Q96P20 1036 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 GPCPD1Q9NPB8 672 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 BTDP43251 543 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 SRLQ86TD4 932 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 EXOC4Q96A65 974 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 RBM12Q9NTZ6 932 aaKnown RBP11.92□□□□□ -0.5
USP28-201ENST00000003302 LAMA2P24043 3122 aaKnown RBP11.92□□□□□ -0.5
USP28-201ENST00000003302 STAT3P40763 770 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 CCDC88AQ3V6T2 1871 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 EYA3Q99504 573 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 ZMYND12Q9H0C1 365 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 ADAMTSL1Q8N6G6 1762 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 LDHBP07195 334 aaKnown RBP11.91□□□□□ -0.5
USP28-201ENST00000003302 TPM1P09493 284 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 OR52Z1P0C646 297 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 WHAMMP3Q1A5X7 153 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 SBK1Q52WX2 424 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 ZFPM1Q8IX07 1006 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 BAP1Q92560 729 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 SETDB2Q96T68 719 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 CCSER1Q9C0I3 900 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 KCNQ5Q9NR82 932 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 RRP15Q9Y3B9 282 aaKnown RBP11.91□□□□□ -0.5
USP28-201ENST00000003302 PSMA7O14818 248 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 NOL4O94818 638 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 FTCDO95954 541 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 ACTN1P12814 892 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 TRAPPC10P48553 1259 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 RHBDL3P58872 404 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 GPSM2P81274 684 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 LRRC55Q6ZSA7 311 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 AJAP1Q9UKB5 411 aaPredicted RBP11.91□□□□□ -0.5
USP28-201ENST00000003302 COL5A3P25940 1745 aaPredicted RBP11.91□□□□□ -0.5
USP28-201ENST00000003302 RBAK-RBAKDNI3L0D1 243 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 ATP8B1O43520 1251 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 GLI1P08151 1106 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 CCNE1P24864 410 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 KIF11P52732 1056 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 PPP2R5BQ15173 497 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 HGSNATQ68CP4 663 aa11.91□□□□□ -0.5
USP28-201ENST00000003302 PURBQ96QR8 312 aaKnown RBP11.91□□□□□ -0.5
USP28-201ENST00000003302 AKR1B1P15121 316 aa11.9□□□□□ -0.5
USP28-201ENST00000003302 WDR93Q6P2C0 686 aa11.9□□□□□ -0.5
USP28-201ENST00000003302 DGKHQ86XP1 1220 aa11.9□□□□□ -0.5
USP28-201ENST00000003302 HAS1Q92839 578 aa11.9□□□□□ -0.5
USP28-201ENST00000003302 CCDC51Q96ER9 411 aa11.9□□□□□ -0.5
USP28-201ENST00000003302 TLR10Q9BXR5 811 aa11.9□□□□□ -0.5
USP28-201ENST00000003302 E9PMD0 336 aa11.9□□□□□ -0.5
USP28-201ENST00000003302 KCNA1Q09470 495 aa11.9□□□□□ -0.5
USP28-201ENST00000003302 DDX12PQ92771 950 aa11.9□□□□□ -0.5
USP28-201ENST00000003302 HAUS4Q9H6D7 363 aa11.9□□□□□ -0.5
USP28-201ENST00000003302 USP17L15C9J2P7 530 aa11.9□□□□□ -0.5
USP28-201ENST00000003302 USP17L13C9JLJ4 530 aa11.9□□□□□ -0.5
USP28-201ENST00000003302 USP17L11C9JVI0 530 aa11.9□□□□□ -0.5
USP28-201ENST00000003302 USP17L18D6R9N7 530 aa11.9□□□□□ -0.5
USP28-201ENST00000003302 USP17L22D6RA61 530 aa11.9□□□□□ -0.5
USP28-201ENST00000003302 USP17L17D6RBQ6 530 aa11.9□□□□□ -0.5
USP28-201ENST00000003302 USP17L19D6RCP7 530 aa11.9□□□□□ -0.5
USP28-201ENST00000003302 USP17L20D6RJB6 530 aa11.9□□□□□ -0.5
USP28-201ENST00000003302 PIP4K2BP78356 416 aa11.9□□□□□ -0.5
USP28-201ENST00000003302 USP17L24Q0WX57 530 aa11.9□□□□□ -0.5
USP28-201ENST00000003302 USP17L6PQ6QN14 398 aa11.9□□□□□ -0.5
USP28-201ENST00000003302 KCTD1Q719H9 257 aa11.9□□□□□ -0.5
USP28-201ENST00000003302 KCNB1Q14721 858 aa11.9□□□□□ -0.51
USP28-201ENST00000003302 CCNI2Q6ZMN8 369 aaPredicted RBP11.9□□□□□ -0.51
USP28-201ENST00000003302 SND1Q7KZF4 910 aaKnown RBP eCLIP11.9□□□□□ -0.51
USP28-201ENST00000003302 PACS2Q86VP3 889 aa11.9□□□□□ -0.51
USP28-201ENST00000003302 ZNF444Q8N0Y2 327 aaPredicted RBP11.9□□□□□ -0.51
USP28-201ENST00000003302 IFIH1Q9BYX4 1025 aaKnown RBP11.9□□□□□ -0.51
USP28-201ENST00000003302 NDST4Q9H3R1 872 aa11.9□□□□□ -0.51
USP28-201ENST00000003302 THAP9Q9H5L6 903 aa11.9□□□□□ -0.51
USP28-201ENST00000003302 LRRC4BQ9NT99 713 aa11.9□□□□□ -0.51
USP28-201ENST00000003302 RAD21O60216 631 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 CARSP49589 748 aaKnown RBP11.89□□□□□ -0.51
USP28-201ENST00000003302 DNM2P50570 870 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 MUM1L1Q5H9M0 696 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 SPATA4Q8NEY3 305 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 PCDHA13Q9Y5I0 950 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 EEF1GP26641 437 aaKnown RBP11.89□□□□□ -0.51
USP28-201ENST00000003302 KIF5BP33176 963 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 PSMC6P62333 389 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 TTMPQ5BVD1 217 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 CENPPQ6IPU0 288 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 TXLNBQ8N3L3 684 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 CAGE1Q8TC20 777 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 MTMR9Q96QG7 549 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 POLLQ9UGP5 575 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 RREB1Q92766 1687 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 SPATA31A5Q5VU36 1347 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 SPATA31A7Q8IWB4 1347 aa11.89□□□□□ -0.51
USP28-201ENST00000003302 A0A1W2PQC6 194 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms