RNA–Protein interactions for RNA: YJR060W

CBF1, Transcript of Basic helix-loop-helix (bHLH) protein, yeastyeast

Gene CBF1, Length 1,056 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CBF1YJR060W NCR1Q12200 1170 aa8.53□□□□□ -1.04
CBF1YJR060W KEX1P09620 729 aa8.52□□□□□ -1.05
CBF1YJR060W TFG1P41895 735 aaPredicted RBP8.52□□□□□ -1.05
CBF1YJR060W MMS22Q06164 1454 aa8.51□□□□□ -1.05
CBF1YJR060W DNF1P32660 1571 aa8.51□□□□□ -1.05
CBF1YJR060W ILV3P39522 585 aaKnown RBP8.5□□□□□ -1.05
CBF1YJR060W MYO4P32492 1471 aa8.5□□□□□ -1.05
CBF1YJR060W NTE1Q04958 1679 aa8.49□□□□□ -1.05
CBF1YJR060W AIR2Q12476 344 aaKnown RBP8.49□□□□□ -1.05
CBF1YJR060W KIC1P38692 1080 aa8.48□□□□□ -1.05
CBF1YJR060W MAK21Q12176 1025 aaKnown RBP8.48□□□□□ -1.05
CBF1YJR060W MET5P47169 1442 aa8.47□□□□□ -1.05
CBF1YJR060W RAD54P32863 898 aa8.47□□□□□ -1.05
CBF1YJR060W YDR090CQ03193 310 aa8.47□□□□□ -1.05
CBF1YJR060W PML39Q03760 334 aa8.47□□□□□ -1.05
CBF1YJR060W TY1B-JR2P47100 1755 aaKnown RBP8.46□□□□□ -1.05
CBF1YJR060W TY1B-ER2Q03619 1755 aa8.46□□□□□ -1.05
CBF1YJR060W TY1B-MR1Q04214 1755 aa8.46□□□□□ -1.05
CBF1YJR060W TY1B-MR2Q04670 1755 aaKnown RBP8.46□□□□□ -1.05
CBF1YJR060W TY1B-LR1Q12088 1755 aaKnown RBP8.46□□□□□ -1.05
CBF1YJR060W TY1B-NL1Q12112 1755 aa8.46□□□□□ -1.05
CBF1YJR060W TY1B-GR1Q12141 1755 aa8.46□□□□□ -1.05
CBF1YJR060W TY1B-BLQ12490 1755 aa8.46□□□□□ -1.05
CBF1YJR060W COX6P00427 148 aa8.46□□□□□ -1.06
CBF1YJR060W LEU3P08638 886 aa8.46□□□□□ -1.06
CBF1YJR060W SPP41P38904 1435 aa8.46□□□□□ -1.06
CBF1YJR060W PCS60P38137 543 aaKnown RBP RIP-Chip data8.45□□□□□ -1.06not detected
CBF1YJR060W VTH1P40438 1549 aa8.44□□□□□ -1.06
CBF1YJR060W VTH2P40890 1549 aa8.44□□□□□ -1.06
CBF1YJR060W DSF2P38213 736 aa8.44□□□□□ -1.06
CBF1YJR060W YJL171CP46992 396 aa8.44□□□□□ -1.06
CBF1YJR060W YTA7P40340 1379 aa8.44□□□□□ -1.06
CBF1YJR060W TRM732Q03496 1420 aa8.44□□□□□ -1.06
CBF1YJR060W YDL129WQ07555 291 aa8.43□□□□□ -1.06
CBF1YJR060W RPO21P04050 1733 aaKnown RBP8.43□□□□□ -1.06
CBF1YJR060W SLI15P38283 698 aa8.42□□□□□ -1.06
CBF1YJR060W MAM3Q12296 706 aa8.42□□□□□ -1.06
CBF1YJR060W MID1P41821 548 aa8.41□□□□□ -1.06
CBF1YJR060W TSC11P40061 1430 aa8.39□□□□□ -1.07
CBF1YJR060W SAP30P38429 201 aa8.39□□□□□ -1.07
CBF1YJR060W BMT6Q12291 365 aa8.38□□□□□ -1.07
CBF1YJR060W PEX29Q03370 554 aa8.37□□□□□ -1.07
CBF1YJR060W IES2P40154 320 aa8.36□□□□□ -1.07
CBF1YJR060W MLP2P40457 1679 aa8.36□□□□□ -1.07
CBF1YJR060W LTE1P07866 1435 aa8.36□□□□□ -1.07
CBF1YJR060W YRF1-1P0CX20 1796 aa8.35□□□□□ -1.07
CBF1YJR060W YRF1-5P0CX21 1796 aa8.35□□□□□ -1.07
CBF1YJR060W YRF1-8P0CX22 1796 aa8.35□□□□□ -1.07
CBF1YJR060W NUP159P40477 1460 aa8.34□□□□□ -1.07
CBF1YJR060W SNQ2P32568 1501 aaKnown RBP8.34□□□□□ -1.08
CBF1YJR060W RPP1BP10622 106 aaKnown RBP8.33□□□□□ -1.08
CBF1YJR060W CDC73Q06697 393 aa8.32□□□□□ -1.08
CBF1YJR060W MPC54Q08550 464 aa8.32□□□□□ -1.08
CBF1YJR060W GEA2P39993 1459 aaKnown RBP8.32□□□□□ -1.08
CBF1YJR060W DPL1Q05567 589 aa8.31□□□□□ -1.08
CBF1YJR060W VPS15P22219 1454 aa8.3□□□□□ -1.08
CBF1YJR060W NUP42P49686 430 aaKnown RBP8.29□□□□□ -1.08
CBF1YJR060W DIT2P21595 489 aa8.28□□□□□ -1.08
CBF1YJR060W ORC6P38826 435 aa8.28□□□□□ -1.08
CBF1YJR060W ULS1Q08562 1619 aa8.28□□□□□ -1.08
CBF1YJR060W NMA111P53920 997 aa8.26□□□□□ -1.09
CBF1YJR060W STH1P32597 1359 aa8.25□□□□□ -1.09
CBF1YJR060W ELP4Q02884 456 aaKnown RBP8.25□□□□□ -1.09
CBF1YJR060W PDR15Q04182 1529 aaKnown RBP8.24□□□□□ -1.09
CBF1YJR060W ARH1P48360 493 aa8.24□□□□□ -1.09
CBF1YJR060W PEX21P50091 288 aa8.24□□□□□ -1.09
CBF1YJR060W CSC1Q06538 782 aa8.24□□□□□ -1.09
CBF1YJR060W ISU2Q12056 156 aa8.24□□□□□ -1.09
CBF1YJR060W SNT2P53127 1403 aa8.23□□□□□ -1.09
CBF1YJR060W PSE1P32337 1089 aaKnown RBP8.23□□□□□ -1.09
CBF1YJR060W HAP5Q02516 242 aa8.23□□□□□ -1.09
CBF1YJR060W YDR344CQ05510 147 aa8.23□□□□□ -1.09
CBF1YJR060W SPO14P36126 1683 aa8.23□□□□□ -1.09
CBF1YJR060W GAP1P19145 602 aaPredicted RBP8.22□□□□□ -1.09
CBF1YJR060W YNR021WP53723 404 aaKnown RBP8.22□□□□□ -1.09
CBF1YJR060W RPN1P38764 993 aaKnown RBP8.21□□□□□ -1.1
CBF1YJR060W BNI1P41832 1953 aa8.21□□□□□ -1.1
CBF1YJR060W PDR12Q02785 1511 aa8.2□□□□□ -1.1
CBF1YJR060W RGR1P19263 1082 aa8.2□□□□□ -1.1
CBF1YJR060W PRE3P38624 215 aa8.2□□□□□ -1.1
CBF1YJR060W MVP1P40959 511 aaKnown RBP8.2□□□□□ -1.1
CBF1YJR060W TFB4Q12004 338 aa8.2□□□□□ -1.1
CBF1YJR060W IRC20Q06554 1556 aa8.19□□□□□ -1.1
CBF1YJR060W NUP170P38181 1502 aa8.19□□□□□ -1.1
CBF1YJR060W CHL1P22516 861 aaPredicted RBP8.18□□□□□ -1.1
CBF1YJR060W GLC3P32775 704 aa8.18□□□□□ -1.1
CBF1YJR060W ATF2P53296 535 aa8.17□□□□□ -1.1
CBF1YJR060W GDB1Q06625 1536 aa8.17□□□□□ -1.1
CBF1YJR060W SPT23P35210 1082 aa8.16□□□□□ -1.1
CBF1YJR060W YPR109WQ06104 294 aa8.16□□□□□ -1.1
CBF1YJR060W TUM1Q08686 304 aaKnown RBP8.16□□□□□ -1.1
CBF1YJR060W YRR1Q12172 810 aa8.15□□□□□ -1.1
CBF1YJR060W DRS2P39524 1355 aa8.14□□□□□ -1.11
CBF1YJR060W BNI4P53858 892 aa8.14□□□□□ -1.11
CBF1YJR060W DOP1Q03921 1698 aa8.14□□□□□ -1.11
CBF1YJR060W YBT1P32386 1661 aa8.12□□□□□ -1.11
CBF1YJR060W PTC2P39966 464 aaKnown RBP8.12□□□□□ -1.11
CBF1YJR060W TEA1P47988 759 aa8.12□□□□□ -1.11
CBF1YJR060W CLB5P30283 435 aa8.11□□□□□ -1.11
CBF1YJR060W DMA2P53924 522 aa8.11□□□□□ -1.11
Retrieved 100 of 5,963 RNA–protein pairs in 8.2 ms