RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeastyeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPT3YDR394W TY1B-JR1P47098 1755 aa8.68□□□□□ -1.02
RPT3YDR394W TY1B-ML2Q03434 1755 aaKnown RBP8.68□□□□□ -1.02
RPT3YDR394W TY1B-ER1Q03612 1755 aa8.68□□□□□ -1.02
RPT3YDR394W TY1B-ML1Q04711 1755 aaKnown RBP8.68□□□□□ -1.02
RPT3YDR394W TY1B-BRQ12193 1756 aa8.68□□□□□ -1.02
RPT3YDR394W TY1B-GR2Q12269 1755 aa8.68□□□□□ -1.02
RPT3YDR394W TY1B-OLQ12273 1755 aa8.68□□□□□ -1.02
RPT3YDR394W TY1B-GR3Q12316 1755 aa8.68□□□□□ -1.02
RPT3YDR394W TY1B-PLQ12414 1755 aaKnown RBP8.68□□□□□ -1.02
RPT3YDR394W TY1B-ORQ92393 1755 aa8.68□□□□□ -1.02
RPT3YDR394W IFH1P39520 1085 aa8.67□□□□□ -1.02
RPT3YDR394W DMA1P38823 416 aa8.66□□□□□ -1.02
RPT3YDR394W MLP2P40457 1679 aa8.65□□□□□ -1.02
RPT3YDR394W ULS1Q08562 1619 aa8.65□□□□□ -1.02
RPT3YDR394W YPR148CQ06523 435 aa8.65□□□□□ -1.02
RPT3YDR394W MID1P41821 548 aa8.63□□□□□ -1.03
RPT3YDR394W SSM4P40318 1319 aa8.61□□□□□ -1.03
RPT3YDR394W YDR344CQ05510 147 aa8.61□□□□□ -1.03
RPT3YDR394W GEA2P39993 1459 aaKnown RBP8.6□□□□□ -1.03
RPT3YDR394W KEX1P09620 729 aa8.59□□□□□ -1.03
RPT3YDR394W CAT8P39113 1433 aa8.58□□□□□ -1.04
RPT3YDR394W UBP14P38237 781 aaKnown RBP8.58□□□□□ -1.04
RPT3YDR394W RTT106P40161 455 aa8.58□□□□□ -1.04
RPT3YDR394W YLR326WQ06170 240 aaKnown RBP8.58□□□□□ -1.04
RPT3YDR394W DNF1P32660 1571 aa8.57□□□□□ -1.04
RPT3YDR394W VHR2P40041 505 aa8.57□□□□□ -1.04
RPT3YDR394W TY3B-GQ99315 1547 aa8.57□□□□□ -1.04
RPT3YDR394W SLI15P38283 698 aa8.55□□□□□ -1.04
RPT3YDR394W PRE3P38624 215 aa8.55□□□□□ -1.04
RPT3YDR394W ESC1Q03661 1658 aaKnown RBP8.55□□□□□ -1.04
RPT3YDR394W TY1B-JR2P47100 1755 aaKnown RBP8.54□□□□□ -1.04
RPT3YDR394W TY1B-ER2Q03619 1755 aa8.54□□□□□ -1.04
RPT3YDR394W TY1B-MR1Q04214 1755 aa8.54□□□□□ -1.04
RPT3YDR394W TY1B-MR2Q04670 1755 aaKnown RBP8.54□□□□□ -1.04
RPT3YDR394W TY1B-LR1Q12088 1755 aaKnown RBP8.54□□□□□ -1.04
RPT3YDR394W TY1B-NL1Q12112 1755 aa8.54□□□□□ -1.04
RPT3YDR394W TY1B-GR1Q12141 1755 aa8.54□□□□□ -1.04
RPT3YDR394W TY1B-BLQ12490 1755 aa8.54□□□□□ -1.04
RPT3YDR394W IRC20Q06554 1556 aa8.54□□□□□ -1.04
RPT3YDR394W CHL1P22516 861 aaPredicted RBP8.54□□□□□ -1.04
RPT3YDR394W VPS70P47161 811 aa8.54□□□□□ -1.04
RPT3YDR394W VPS15P22219 1454 aa8.52□□□□□ -1.05
RPT3YDR394W PEX29Q03370 554 aa8.52□□□□□ -1.05
RPT3YDR394W RPA190P10964 1664 aaKnown RBP8.52□□□□□ -1.05
RPT3YDR394W NUP159P40477 1460 aa8.51□□□□□ -1.05
RPT3YDR394W NTE1Q04958 1679 aa8.51□□□□□ -1.05
RPT3YDR394W ARH1P48360 493 aa8.51□□□□□ -1.05
RPT3YDR394W MPC54Q08550 464 aa8.51□□□□□ -1.05
RPT3YDR394W PCS60P38137 543 aaKnown RBP RIP-Chip data8.49□□□□□ -1.05 RIP-Chip
RPT3YDR394W REF2P42073 533 aaPredicted RBP8.49□□□□□ -1.05
RPT3YDR394W ELP4Q02884 456 aaKnown RBP8.49□□□□□ -1.05
RPT3YDR394W YDR090CQ03193 310 aa8.49□□□□□ -1.05
RPT3YDR394W RPO21P04050 1733 aaKnown RBP8.49□□□□□ -1.05
RPT3YDR394W RAD54P32863 898 aa8.48□□□□□ -1.05
RPT3YDR394W MET5P47169 1442 aa8.47□□□□□ -1.05
RPT3YDR394W MET10P39692 1035 aa8.47□□□□□ -1.05
RPT3YDR394W PDR12Q02785 1511 aa8.47□□□□□ -1.05
RPT3YDR394W SRB8P25648 1427 aa8.46□□□□□ -1.05
RPT3YDR394W YBT1P32386 1661 aa8.44□□□□□ -1.06
RPT3YDR394W HAP5Q02516 242 aa8.44□□□□□ -1.06
RPT3YDR394W DPL1Q05567 589 aa8.44□□□□□ -1.06
RPT3YDR394W CDC73Q06697 393 aa8.43□□□□□ -1.06
RPT3YDR394W PDR10P51533 1564 aa8.43□□□□□ -1.06
RPT3YDR394W NUP157P40064 1391 aaKnown RBP8.41□□□□□ -1.06
RPT3YDR394W NMA111P53920 997 aa8.41□□□□□ -1.06
RPT3YDR394W GDB1Q06625 1536 aa8.4□□□□□ -1.06
RPT3YDR394W BCK2P33306 851 aa8.4□□□□□ -1.06
RPT3YDR394W ARO1P08566 1588 aaKnown RBP8.39□□□□□ -1.07
RPT3YDR394W SPT23P35210 1082 aa8.39□□□□□ -1.07
RPT3YDR394W MMS1Q06211 1407 aa8.38□□□□□ -1.07
RPT3YDR394W KIC1P38692 1080 aa8.38□□□□□ -1.07
RPT3YDR394W CKB1P43639 278 aa8.38□□□□□ -1.07
RPT3YDR394W BNI4P53858 892 aa8.38□□□□□ -1.07
RPT3YDR394W MAK21Q12176 1025 aaKnown RBP8.36□□□□□ -1.07
RPT3YDR394W COX6P00427 148 aa8.35□□□□□ -1.07
RPT3YDR394W IQG1Q12280 1495 aa8.34□□□□□ -1.07
RPT3YDR394W VRP1P37370 817 aa8.34□□□□□ -1.07
RPT3YDR394W ISU2Q12056 156 aa8.34□□□□□ -1.07
RPT3YDR394W YSP2Q06681 1438 aa8.34□□□□□ -1.07
RPT3YDR394W SPO14P36126 1683 aa8.34□□□□□ -1.08
RPT3YDR394W BUD21Q08492 214 aaPredicted RBP8.33□□□□□ -1.08
RPT3YDR394W PBS2P08018 668 aa8.32□□□□□ -1.08
RPT3YDR394W RPP1BP10622 106 aaKnown RBP8.31□□□□□ -1.08
RPT3YDR394W ORC6P38826 435 aa8.31□□□□□ -1.08
RPT3YDR394W BUD3P25558 1636 aa8.3□□□□□ -1.08
RPT3YDR394W GAP1P19145 602 aaPredicted RBP8.3□□□□□ -1.08
RPT3YDR394W PTC2P39966 464 aaKnown RBP8.3□□□□□ -1.08
RPT3YDR394W POL5P39985 1022 aaKnown RBP8.3□□□□□ -1.08
RPT3YDR394W YML082WQ04533 649 aaKnown RBP8.3□□□□□ -1.08
RPT3YDR394W YRF1-1P0CX20 1796 aa8.3□□□□□ -1.08
RPT3YDR394W YRF1-5P0CX21 1796 aa8.3□□□□□ -1.08
RPT3YDR394W YRF1-8P0CX22 1796 aa8.3□□□□□ -1.08
RPT3YDR394W GCN2P15442 1659 aa8.27□□□□□ -1.08
RPT3YDR394W YPR015CQ12531 247 aa8.27□□□□□ -1.09
RPT3YDR394W RAM1P22007 431 aa8.26□□□□□ -1.09
RPT3YDR394W PDR1P12383 1068 aa8.25□□□□□ -1.09
RPT3YDR394W DSF2P38213 736 aa8.25□□□□□ -1.09
RPT3YDR394W NOP7P53261 605 aaKnown RBP8.25□□□□□ -1.09
RPT3YDR394W CSC1Q06538 782 aa8.25□□□□□ -1.09
RPT3YDR394W LTE1P07866 1435 aa8.25□□□□□ -1.09
Retrieved 100 of 5,963 RNA–protein pairs in 14.6 ms