RNA–Protein interactions for RNA: ENST00000642072.1

LINC00339-212, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 338 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-212ENST00000642072 ATP10AO60312 1499 aa14.43□□□□□ -0.1
LINC00339-212ENST00000642072 FER1L4A9Z1Z3 1794 aa14.42□□□□□ -0.1
LINC00339-212ENST00000642072 C9orf84Q5VXU9 1444 aa14.41□□□□□ -0.1
LINC00339-212ENST00000642072 ARHGAP35Q9NRY4 1499 aa14.41□□□□□ -0.1
LINC00339-212ENST00000642072 FMN1Q68DA7 1419 aa14.41□□□□□ -0.1
LINC00339-212ENST00000642072 KIF14Q15058 1648 aa14.4□□□□□ -0.1
LINC00339-212ENST00000642072 KDM5CP41229 1560 aa14.39□□□□□ -0.11
LINC00339-212ENST00000642072 MYO5CQ9NQX4 1742 aa14.39□□□□□ -0.11
LINC00339-212ENST00000642072 MLECQ14165 292 aa14.39□□□□□ -0.11
LINC00339-212ENST00000642072 EFCAB2Q5VUJ9 269 aa14.38□□□□□ -0.11
LINC00339-212ENST00000642072 PLPPR3Q6T4P5 718 aa14.38□□□□□ -0.11
LINC00339-212ENST00000642072 ZNF518AQ6AHZ1 1483 aa14.38□□□□□ -0.11
LINC00339-212ENST00000642072 CERKQ8TCT0 537 aa14.37□□□□□ -0.11
LINC00339-212ENST00000642072 TROQ12816 1431 aaPredicted RBP14.37□□□□□ -0.11
LINC00339-212ENST00000642072 PREX1Q8TCU6 1659 aa14.36□□□□□ -0.11
LINC00339-212ENST00000642072 REREQ9P2R6 1566 aa14.34□□□□□ -0.11
LINC00339-212ENST00000642072 DIP2CQ9Y2E4 1556 aa14.34□□□□□ -0.11
LINC00339-212ENST00000642072 AFAP1Q8N556 730 aa14.34□□□□□ -0.11
LINC00339-212ENST00000642072 LRRIQ1Q96JM4 1722 aa14.33□□□□□ -0.12
LINC00339-212ENST00000642072 ARHGAP5Q13017 1502 aa14.33□□□□□ -0.12
LINC00339-212ENST00000642072 CEBPAP49715 358 aaPredicted RBP14.33□□□□□ -0.12
LINC00339-212ENST00000642072 CDK11AQ9UQ88 783 aaPredicted RBP14.33□□□□□ -0.12
LINC00339-212ENST00000642072 STRCQ7RTU9 1775 aa14.32□□□□□ -0.12
LINC00339-212ENST00000642072 MLH3Q9UHC1 1453 aa14.31□□□□□ -0.12
LINC00339-212ENST00000642072 ABCA6Q8N139 1617 aa14.31□□□□□ -0.12
LINC00339-212ENST00000642072 UBTFP17480 764 aaKnown RBP14.3□□□□□ -0.12
LINC00339-212ENST00000642072 CLIP1P30622 1438 aa14.3□□□□□ -0.12
LINC00339-212ENST00000642072 ABCC1P33527 1531 aa14.3□□□□□ -0.12
LINC00339-212ENST00000642072 AGLP35573 1532 aa14.3□□□□□ -0.12
LINC00339-212ENST00000642072 CDC42BPBQ9Y5S2 1711 aa14.29□□□□□ -0.12
LINC00339-212ENST00000642072 ATP1B4Q9UN42 357 aaPredicted RBP14.29□□□□□ -0.12
LINC00339-212ENST00000642072 UHRF1BP1Q6BDS2 1440 aa14.28□□□□□ -0.12
LINC00339-212ENST00000642072 PREX2Q70Z35 1606 aa14.28□□□□□ -0.12
LINC00339-212ENST00000642072 EHMT2Q96KQ7 1210 aa14.28□□□□□ -0.12
LINC00339-212ENST00000642072 TRAPPC8Q9Y2L5 1435 aa14.28□□□□□ -0.12
LINC00339-212ENST00000642072 C3P01024 1663 aa14.26□□□□□ -0.13
LINC00339-212ENST00000642072 CASKIN1Q8WXD9 1431 aa14.25□□□□□ -0.13
LINC00339-212ENST00000642072 SETD1BQ9UPS6 1966 aaKnown RBP14.25□□□□□ -0.13
LINC00339-212ENST00000642072 ITSN2Q9NZM3 1697 aa14.24□□□□□ -0.13
LINC00339-212ENST00000642072 DMRT2Q9Y5R5 561 aa14.24□□□□□ -0.13
LINC00339-212ENST00000642072 KIDINS220Q9ULH0 1771 aa14.24□□□□□ -0.13
LINC00339-212ENST00000642072 CCDC18Q5T9S5 1454 aa14.24□□□□□ -0.13
LINC00339-212ENST00000642072 PTPRTO14522 1441 aa14.24□□□□□ -0.13
LINC00339-212ENST00000642072 CHIC1Q5VXU3 224 aa14.21□□□□□ -0.13
LINC00339-212ENST00000642072 LTBP4Q8N2S1 1624 aa14.21□□□□□ -0.13
LINC00339-212ENST00000642072 CDC42BPAQ5VT25 1732 aa14.21□□□□□ -0.14
LINC00339-212ENST00000642072 NCOA1Q15788 1441 aa14.2□□□□□ -0.14
LINC00339-212ENST00000642072 CNTLNQ9NXG0 1405 aa14.2□□□□□ -0.14
LINC00339-212ENST00000642072 SAMD9LQ8IVG5 1584 aa14.19□□□□□ -0.14
LINC00339-212ENST00000642072 FYCO1Q9BQS8 1478 aa14.18□□□□□ -0.14
LINC00339-212ENST00000642072 MYT1LQ9UL68 1186 aa14.18□□□□□ -0.14
LINC00339-212ENST00000642072 NPATQ14207 1427 aa14.17□□□□□ -0.14
LINC00339-212ENST00000642072 SYCP2Q9BX26 1530 aa14.16□□□□□ -0.14
LINC00339-212ENST00000642072 GPATCH8Q9UKJ3 1502 aaKnown RBP14.16□□□□□ -0.14
LINC00339-212ENST00000642072 ILDR2Q71H61 639 aa14.16□□□□□ -0.14
LINC00339-212ENST00000642072 PLXNC1O60486 1568 aa14.16□□□□□ -0.14
LINC00339-212ENST00000642072 MROH2AA6NES4 1674 aa14.16□□□□□ -0.14
LINC00339-212ENST00000642072 IQSEC2Q5JU85 1478 aa14.15□□□□□ -0.14
LINC00339-212ENST00000642072 INO80Q9ULG1 1556 aaPredicted RBP14.13□□□□□ -0.15
LINC00339-212ENST00000642072 DISP3Q9P2K9 1392 aa14.13□□□□□ -0.15
LINC00339-212ENST00000642072 ESF1Q9H501 851 aaKnown RBP14.13□□□□□ -0.15
LINC00339-212ENST00000642072 KIAA1107Q9UPP5 1409 aa14.13□□□□□ -0.15
LINC00339-212ENST00000642072 CAMSAP1Q5T5Y3 1602 aa14.12□□□□□ -0.15
LINC00339-212ENST00000642072 ZMYM3Q14202 1370 aa14.12□□□□□ -0.15
LINC00339-212ENST00000642072 ATP7AQ04656 1500 aa14.12□□□□□ -0.15
LINC00339-212ENST00000642072 SPAG9O60271 1321 aaKnown RBP14.11□□□□□ -0.15
LINC00339-212ENST00000642072 HNRNPMP52272 730 aaKnown RBP eCLIP14.1□□□□□ -0.15
LINC00339-212ENST00000642072 ZNF142P52746 1687 aaPredicted RBP14.1□□□□□ -0.15
LINC00339-212ENST00000642072 SPATA31D1Q6ZQQ2 1576 aa14.09□□□□□ -0.15
LINC00339-212ENST00000642072 PTPRKQ15262 1439 aa14.09□□□□□ -0.15
LINC00339-212ENST00000642072 MYO3AQ8NEV4 1616 aa14.09□□□□□ -0.15
LINC00339-212ENST00000642072 SOCS7O14512 581 aa14.09□□□□□ -0.15
LINC00339-212ENST00000642072 ZNF777Q9ULD5 760 aaPredicted RBP14.09□□□□□ -0.15
LINC00339-212ENST00000642072 A2MP01023 1474 aa14.09□□□□□ -0.15
LINC00339-212ENST00000642072 PLA2R1Q13018 1463 aa14.09□□□□□ -0.15
LINC00339-212ENST00000642072 PLEKHH2Q8IVE3 1493 aa14.09□□□□□ -0.15
LINC00339-212ENST00000642072 SUPT6HQ7KZ85 1726 aaKnown RBP14.09□□□□□ -0.15
LINC00339-212ENST00000642072 TCOF1Q13428 1488 aaKnown RBP14.08□□□□□ -0.16
LINC00339-212ENST00000642072 CLTCQ00610 1675 aaKnown RBP14.07□□□□□ -0.16
LINC00339-212ENST00000642072 CEP170BQ9Y4F5 1589 aaPredicted RBP14.06□□□□□ -0.16
LINC00339-212ENST00000642072 NCKAP5LQ9HCH0 1330 aa14.06□□□□□ -0.16
LINC00339-212ENST00000642072 CFDP1Q9UEE9 299 aaPredicted RBP14.05□□□□□ -0.16
LINC00339-212ENST00000642072 ZNF335Q9H4Z2 1342 aaPredicted RBP14.05□□□□□ -0.16
LINC00339-212ENST00000642072 CCNB3Q8WWL7 1395 aa14.05□□□□□ -0.16
LINC00339-212ENST00000642072 MBD5Q9P267 1494 aa14.05□□□□□ -0.16
LINC00339-212ENST00000642072 TIAM1Q13009 1591 aa14.03□□□□□ -0.16
LINC00339-212ENST00000642072 ADGBQ8N7X0 1667 aa14.02□□□□□ -0.16
LINC00339-212ENST00000642072 ZNF644Q9H582 1327 aaPredicted RBP14.02□□□□□ -0.17
LINC00339-212ENST00000642072 PKD2Q13563 968 aa14.02□□□□□ -0.17
LINC00339-212ENST00000642072 PPP6R1Q9UPN7 881 aa14.02□□□□□ -0.17
LINC00339-212ENST00000642072 RTEL1-TNFRSF6BF6WH68 1400 aa14□□□□□ -0.17
LINC00339-212ENST00000642072 MTUS2Q5JR59 1369 aa14□□□□□ -0.17
LINC00339-212ENST00000642072 GGT6Q6P531 493 aa14□□□□□ -0.17
LINC00339-212ENST00000642072 A2ML1A8K2U0 1454 aa13.99□□□□□ -0.17
LINC00339-212ENST00000642072 DNMT1P26358 1616 aaKnown RBP13.99□□□□□ -0.17
LINC00339-212ENST00000642072 CEP162Q5TB80 1403 aa13.98□□□□□ -0.17
LINC00339-212ENST00000642072 EHBP1L1Q8N3D4 1523 aa13.98□□□□□ -0.17
LINC00339-212ENST00000642072 DHX29Q7Z478 1369 aaKnown RBP13.97□□□□□ -0.17
LINC00339-212ENST00000642072 NEURL4Q96JN8 1562 aa13.97□□□□□ -0.17
LINC00339-212ENST00000642072 UBAP1LF5GYI3 381 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms