RNA–Protein interactions for RNA: ENST00000641891.1

PHGDH-229, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,175 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-229ENST00000641891 GTF3C3Q9Y5Q9 886 aa24.35■■□□□ 1.49
PHGDH-229ENST00000641891 ABCA8O94911 1581 aa24.34■■□□□ 1.49
PHGDH-229ENST00000641891 ADCY10Q96PN6 1610 aa24.33■■□□□ 1.49
PHGDH-229ENST00000641891 CAMSAP2Q08AD1 1489 aa24.3■■□□□ 1.48
PHGDH-229ENST00000641891 ITSN2Q9NZM3 1697 aa24.3■■□□□ 1.48
PHGDH-229ENST00000641891 GPATCH8Q9UKJ3 1502 aaKnown RBP24.3■■□□□ 1.48
PHGDH-229ENST00000641891 HIRIP3Q9BW71 556 aaPredicted RBP24.3■■□□□ 1.48
PHGDH-229ENST00000641891 ROCK1Q13464 1354 aa24.3■■□□□ 1.48
PHGDH-229ENST00000641891 CHD1O14646 1710 aa24.29■■□□□ 1.48
PHGDH-229ENST00000641891 KDM5BQ9UGL1 1544 aa24.28■■□□□ 1.48
PHGDH-229ENST00000641891 CFDP1Q9UEE9 299 aaPredicted RBP24.27■■□□□ 1.48
PHGDH-229ENST00000641891 ATP10BO94823 1461 aa24.26■■□□□ 1.47
PHGDH-229ENST00000641891 MPHOSPH9Q99550 1183 aa24.26■■□□□ 1.47
PHGDH-229ENST00000641891 ZNF777Q9ULD5 760 aaPredicted RBP24.24■■□□□ 1.47
PHGDH-229ENST00000641891 FOXD1Q16676 465 aa24.23■■□□□ 1.47
PHGDH-229ENST00000641891 DDX10Q13206 875 aaKnown RBP24.22■■□□□ 1.47
PHGDH-229ENST00000641891 PLEKHD1A6NEE1 506 aa24.2■■□□□ 1.46
PHGDH-229ENST00000641891 CDC42BPAQ5VT25 1732 aa24.19■■□□□ 1.46
PHGDH-229ENST00000641891 PTPRGP23470 1445 aa24.18■■□□□ 1.46
PHGDH-229ENST00000641891 ABCC10Q5T3U5 1492 aa24.18■■□□□ 1.46
PHGDH-229ENST00000641891 CROCC2H7BZ55 1655 aa24.18■■□□□ 1.46
PHGDH-229ENST00000641891 ADGBQ8N7X0 1667 aa24.17■■□□□ 1.46
PHGDH-229ENST00000641891 NCOA1Q15788 1441 aa24.14■■□□□ 1.45
PHGDH-229ENST00000641891 SHROOM2Q13796 1616 aa24.12■■□□□ 1.45
PHGDH-229ENST00000641891 KCNH8Q96L42 1107 aa24.11■■□□□ 1.45
PHGDH-229ENST00000641891 ADGRL2O95490 1459 aa24.11■■□□□ 1.45
PHGDH-229ENST00000641891 ANKRD30BQ9BXX2 1392 aa24.1■■□□□ 1.45
PHGDH-229ENST00000641891 ERCC6L2Q5T890 1561 aa24.09■■□□□ 1.45
PHGDH-229ENST00000641891 SLC4A1APQ9BWU0 796 aaKnown RBP24.08■■□□□ 1.45
PHGDH-229ENST00000641891 PZPP20742 1482 aa24.07■■□□□ 1.44
PHGDH-229ENST00000641891 L3MBTL2Q969R5 705 aa24.06■■□□□ 1.44
PHGDH-229ENST00000641891 ANKRD30AQ9BXX3 1397 aa24.04■■□□□ 1.44
PHGDH-229ENST00000641891 RPRD2Q5VT52 1461 aaKnown RBP24.04■■□□□ 1.44
PHGDH-229ENST00000641891 C9orf84Q5VXU9 1444 aa24.01■■□□□ 1.43
PHGDH-229ENST00000641891 SHANK2Q9UPX8 1470 aa24■■□□□ 1.43
PHGDH-229ENST00000641891 TEX14Q8IWB6 1497 aa23.99■■□□□ 1.43
PHGDH-229ENST00000641891 ANKRD50Q9ULJ7 1429 aa23.99■■□□□ 1.43
PHGDH-229ENST00000641891 CDC42BPBQ9Y5S2 1711 aa23.98■■□□□ 1.43
PHGDH-229ENST00000641891 HNRNPMP52272 730 aaKnown RBP eCLIP23.98■■□□□ 1.431e-6■■■■□ 22.8
PHGDH-229ENST00000641891 HSPA5P11021 654 aaKnown RBP23.98■■□□□ 1.43
PHGDH-229ENST00000641891 PREX2Q70Z35 1606 aa23.97■■□□□ 1.43
PHGDH-229ENST00000641891 SAMD9LQ8IVG5 1584 aa23.96■■□□□ 1.43
PHGDH-229ENST00000641891 MBD5Q9P267 1494 aa23.94■■□□□ 1.42
PHGDH-229ENST00000641891 ABCC2Q92887 1545 aa23.94■■□□□ 1.42
PHGDH-229ENST00000641891 ARHGEF5Q12774 1597 aa23.94■■□□□ 1.42
PHGDH-229ENST00000641891 TTC37Q6PGP7 1564 aa23.94■■□□□ 1.42
PHGDH-229ENST00000641891 NBPF8Q3BBV2 869 aa23.93■■□□□ 1.42
PHGDH-229ENST00000641891 KIAA1107Q9UPP5 1409 aa23.92■■□□□ 1.42
PHGDH-229ENST00000641891 CLASP1Q7Z460 1538 aa23.92■■□□□ 1.42
PHGDH-229ENST00000641891 TSPY4P0CV99 314 aa23.91■■□□□ 1.42
PHGDH-229ENST00000641891 TSPY10P0CW01 314 aa23.91■■□□□ 1.42
PHGDH-229ENST00000641891 ANP32CO43423 234 aa23.91■■□□□ 1.42
PHGDH-229ENST00000641891 PKD2Q13563 968 aa23.91■■□□□ 1.42
PHGDH-229ENST00000641891 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.9■■□□□ 1.426e-6■■■■■ 38.2
PHGDH-229ENST00000641891 EIF4G2P78344 907 aaKnown RBP eCLIP23.89■■□□□ 1.427e-14■■■■■ 63.8
PHGDH-229ENST00000641891 KIF15Q9NS87 1388 aa23.88■■□□□ 1.41
PHGDH-229ENST00000641891 WASHC2AQ641Q2 1341 aa23.88■■□□□ 1.41
PHGDH-229ENST00000641891 CCDC141Q6ZP82 1450 aa23.88■■□□□ 1.41
PHGDH-229ENST00000641891 NUP155O75694 1391 aa23.86■■□□□ 1.41
PHGDH-229ENST00000641891 ARHGAP5Q13017 1502 aa23.86■■□□□ 1.41
PHGDH-229ENST00000641891 SYCP2Q9BX26 1530 aa23.85■■□□□ 1.41
PHGDH-229ENST00000641891 CCER2I3L3R5 266 aa23.82■■□□□ 1.4
PHGDH-229ENST00000641891 KDM5DQ9BY66 1539 aa23.82■■□□□ 1.4
PHGDH-229ENST00000641891 ZCCHC11Q5TAX3 1644 aaKnown RBP23.82■■□□□ 1.4
PHGDH-229ENST00000641891 MYO5CQ9NQX4 1742 aa23.81■■□□□ 1.4
PHGDH-229ENST00000641891 C11orf95C9JLR9 678 aaPredicted RBP23.79■■□□□ 1.4
PHGDH-229ENST00000641891 RSPH4AQ5TD94 716 aa23.75■■□□□ 1.39
PHGDH-229ENST00000641891 UHRF1BP1LA0JNW5 1464 aa23.75■■□□□ 1.39
PHGDH-229ENST00000641891 SPATA31E1Q6ZUB1 1445 aa23.74■■□□□ 1.39
PHGDH-229ENST00000641891 MAST1Q9Y2H9 1570 aa23.74■■□□□ 1.39
PHGDH-229ENST00000641891 CCDC7Q96M83 1385 aa23.73■■□□□ 1.39
PHGDH-229ENST00000641891 ZNF326Q5BKZ1 582 aaKnown RBP23.73■■□□□ 1.39
PHGDH-229ENST00000641891 ARHGEF12Q9NZN5 1544 aa23.72■■□□□ 1.39
PHGDH-229ENST00000641891 CNTLNQ9NXG0 1405 aa23.71■■□□□ 1.39
PHGDH-229ENST00000641891 FAM135AQ9P2D6 1515 aa23.71■■□□□ 1.39
PHGDH-229ENST00000641891 PLEKHH2Q8IVE3 1493 aa23.68■■□□□ 1.38
PHGDH-229ENST00000641891 PLCH2O75038 1416 aa23.68■■□□□ 1.38
PHGDH-229ENST00000641891 PLXNC1O60486 1568 aa23.66■■□□□ 1.38
PHGDH-229ENST00000641891 KIF7Q2M1P5 1343 aa23.65■■□□□ 1.38
PHGDH-229ENST00000641891 UNC13BO14795 1591 aa23.65■■□□□ 1.38
PHGDH-229ENST00000641891 POLR1AO95602 1720 aaPredicted RBP23.65■■□□□ 1.38
PHGDH-229ENST00000641891 SUPT16HQ9Y5B9 1047 aaKnown RBP23.64■■□□□ 1.37
PHGDH-229ENST00000641891 ABCC1P33527 1531 aa23.62■■□□□ 1.37
PHGDH-229ENST00000641891 UHRF1BP1Q6BDS2 1440 aa23.62■■□□□ 1.37
PHGDH-229ENST00000641891 USP47Q96K76 1375 aa23.62■■□□□ 1.37
PHGDH-229ENST00000641891 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.62■■□□□ 1.375e-16■■□□□ 13.6
PHGDH-229ENST00000641891 BCORL1Q5H9F3 1711 aa23.6■■□□□ 1.37
PHGDH-229ENST00000641891 EFCAB2Q5VUJ9 269 aa23.6■■□□□ 1.37
PHGDH-229ENST00000641891 KDM5CP41229 1560 aa23.6■■□□□ 1.37
PHGDH-229ENST00000641891 KDM2AQ9Y2K7 1162 aa23.59■■□□□ 1.37
PHGDH-229ENST00000641891 TRAPPC8Q9Y2L5 1435 aa23.59■■□□□ 1.37
PHGDH-229ENST00000641891 RALGAPBQ86X10 1494 aa23.58■■□□□ 1.37
PHGDH-229ENST00000641891 DUOX2Q9NRD8 1548 aa23.58■■□□□ 1.37
PHGDH-229ENST00000641891 IQGAP3Q86VI3 1631 aa23.56■■□□□ 1.36
PHGDH-229ENST00000641891 DCAF11Q8TEB1 546 aa23.55■■□□□ 1.36
PHGDH-229ENST00000641891 PLA2R1Q13018 1463 aa23.54■■□□□ 1.36
PHGDH-229ENST00000641891 CCDC184Q52MB2 194 aa23.54■■□□□ 1.36
PHGDH-229ENST00000641891 PRKRIP1Q9H875 184 aaPredicted RBP23.52■■□□□ 1.36
PHGDH-229ENST00000641891 CCDC144AA2RUR9 1427 aa23.52■■□□□ 1.36
PHGDH-229ENST00000641891 ERBINQ96RT1 1412 aa23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms