RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 AMPHP49418 695 aa6.58□□□□□ -1.36
SCN1A-218ENST00000640036 TULP1O00294 542 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-218ENST00000640036 PDE3BQ13370 1112 aa6.58□□□□□ -1.36
SCN1A-218ENST00000640036 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-218ENST00000640036 CEP162Q5TB80 1403 aa6.57□□□□□ -1.36
SCN1A-218ENST00000640036 MRC2Q9UBG0 1479 aa6.57□□□□□ -1.36
SCN1A-218ENST00000640036 ATAD2BQ9ULI0 1458 aa6.57□□□□□ -1.36
SCN1A-218ENST00000640036 LAS1LQ9Y4W2 734 aaKnown RBP6.56□□□□□ -1.36
SCN1A-218ENST00000640036 TAF7LQ5H9L4 462 aa6.56□□□□□ -1.36
SCN1A-218ENST00000640036 ANO8Q9HCE9 1232 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-218ENST00000640036 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-218ENST00000640036 VGFO15240 615 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-218ENST00000640036 U2SURPO15042 1029 aaKnown RBP6.55□□□□□ -1.36
SCN1A-218ENST00000640036 TXNDC2Q86VQ3 553 aa6.55□□□□□ -1.36
SCN1A-218ENST00000640036 FMN1Q68DA7 1419 aa6.55□□□□□ -1.36
SCN1A-218ENST00000640036 WDHD1O75717 1129 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-218ENST00000640036 HNRNPMP52272 730 aaKnown RBP eCLIP6.55□□□□□ -1.36
SCN1A-218ENST00000640036 FRAT2O75474 233 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-218ENST00000640036 OS9Q13438 667 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-218ENST00000640036 MYO15BQ96JP2 1530 aa6.55□□□□□ -1.36
SCN1A-218ENST00000640036 C16orf71Q8IYS4 520 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-218ENST00000640036 GAPVD1Q14C86 1478 aa6.55□□□□□ -1.36
SCN1A-218ENST00000640036 NGLY1Q96IV0 654 aa6.55□□□□□ -1.36
SCN1A-218ENST00000640036 CARD11Q9BXL7 1154 aa6.54□□□□□ -1.36
SCN1A-218ENST00000640036 TERF2IPQ9NYB0 399 aa6.54□□□□□ -1.36
SCN1A-218ENST00000640036 HSP90AA1P07900 732 aaKnown RBP6.54□□□□□ -1.36
SCN1A-218ENST00000640036 LTV1Q96GA3 475 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-218ENST00000640036 ANKRD30AQ9BXX3 1397 aa6.53□□□□□ -1.36
SCN1A-218ENST00000640036 PRDM2Q13029 1718 aa6.53□□□□□ -1.36
SCN1A-218ENST00000640036 CCDC18Q5T9S5 1454 aa6.53□□□□□ -1.36
SCN1A-218ENST00000640036 C1orf141Q5JVX7 400 aa6.52□□□□□ -1.37
SCN1A-218ENST00000640036 TNNT2P45379 298 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-218ENST00000640036 CCAR1Q8IX12 1150 aaKnown RBP6.52□□□□□ -1.37
SCN1A-218ENST00000640036 SALL2Q9Y467 1007 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-218ENST00000640036 TMF1P82094 1093 aa6.52□□□□□ -1.37
SCN1A-218ENST00000640036 PAXIP1Q6ZW49 1069 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-218ENST00000640036 DCAF11Q8TEB1 546 aa6.52□□□□□ -1.37
SCN1A-218ENST00000640036 CFAP44Q96MT7 982 aa6.52□□□□□ -1.37
SCN1A-218ENST00000640036 IFT140Q96RY7 1462 aa6.51□□□□□ -1.37
SCN1A-218ENST00000640036 GPRASP1Q5JY77 1395 aa6.51□□□□□ -1.37
SCN1A-218ENST00000640036 CTDP1Q9Y5B0 961 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-218ENST00000640036 GRIN2BQ13224 1484 aa6.51□□□□□ -1.37
SCN1A-218ENST00000640036 MROH2BQ7Z745 1585 aa6.51□□□□□ -1.37
SCN1A-218ENST00000640036 TRIM34Q9BYJ4 488 aa6.51□□□□□ -1.37
SCN1A-218ENST00000640036 UPF2Q9HAU5 1272 aaKnown RBP6.51□□□□□ -1.37
SCN1A-218ENST00000640036 HDAC5Q9UQL6 1122 aa6.51□□□□□ -1.37
SCN1A-218ENST00000640036 USP35Q9P2H5 1018 aa6.5□□□□□ -1.37
SCN1A-218ENST00000640036 PPP6R1Q9UPN7 881 aa6.5□□□□□ -1.37
SCN1A-218ENST00000640036 TNIKQ9UKE5 1360 aa6.5□□□□□ -1.37
SCN1A-218ENST00000640036 NBPF8Q3BBV2 869 aa6.5□□□□□ -1.37
SCN1A-218ENST00000640036 NBPF14Q5TI25 921 aa6.5□□□□□ -1.37
SCN1A-218ENST00000640036 RAPGEF4Q8WZA2 1011 aa6.49□□□□□ -1.37
SCN1A-218ENST00000640036 CHMP4BQ9H444 224 aaKnown RBP6.49□□□□□ -1.37
SCN1A-218ENST00000640036 NCBP3Q53F19 620 aaKnown RBP6.49□□□□□ -1.37
SCN1A-218ENST00000640036 GORABQ5T7V8 394 aa6.49□□□□□ -1.37
SCN1A-218ENST00000640036 STRN4Q9NRL3 753 aa6.49□□□□□ -1.37
SCN1A-218ENST00000640036 UACAQ9BZF9 1416 aa6.49□□□□□ -1.37
SCN1A-218ENST00000640036 TTC5Q8N0Z6 440 aa6.48□□□□□ -1.37
SCN1A-218ENST00000640036 CLSTN1O94985 981 aa6.48□□□□□ -1.37
SCN1A-218ENST00000640036 PRG4Q92954 1404 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-218ENST00000640036 ESCO1Q5FWF5 840 aa6.48□□□□□ -1.37
SCN1A-218ENST00000640036 NUP155O75694 1391 aa6.48□□□□□ -1.37
SCN1A-218ENST00000640036 MORC1Q86VD1 984 aa6.48□□□□□ -1.37
SCN1A-218ENST00000640036 EIF5BO60841 1220 aaKnown RBP6.48□□□□□ -1.37
SCN1A-218ENST00000640036 AQRO60306 1485 aaKnown RBP eCLIP6.48□□□□□ -1.37
SCN1A-218ENST00000640036 NOL10Q9BSC4 688 aaKnown RBP6.48□□□□□ -1.37
SCN1A-218ENST00000640036 CHMP3Q9Y3E7 222 aa6.48□□□□□ -1.37
SCN1A-218ENST00000640036 SMARCA4P51532 1647 aa6.47□□□□□ -1.37
SCN1A-218ENST00000640036 DNAJC5Q9H3Z4 198 aa6.47□□□□□ -1.37
SCN1A-218ENST00000640036 NCAPD3P42695 1498 aa6.47□□□□□ -1.37
SCN1A-218ENST00000640036 CALD1Q05682 793 aaKnown RBP6.47□□□□□ -1.37
SCN1A-218ENST00000640036 EIF3AQ14152 1382 aaKnown RBP6.47□□□□□ -1.37
SCN1A-218ENST00000640036 CCDC88BA6NC98 1476 aa6.47□□□□□ -1.37
SCN1A-218ENST00000640036 RBM33Q96EV2 1170 aaKnown RBP6.47□□□□□ -1.37
SCN1A-218ENST00000640036 FGD1P98174 961 aa6.47□□□□□ -1.37
SCN1A-218ENST00000640036 ADAMTS2O95450 1211 aa6.46□□□□□ -1.37
SCN1A-218ENST00000640036 KCNJ4P48050 445 aa6.46□□□□□ -1.38
SCN1A-218ENST00000640036 HSP90B1P14625 803 aaKnown RBP6.46□□□□□ -1.38
SCN1A-218ENST00000640036 PRDM11Q9NQV5 511 aa6.46□□□□□ -1.38
SCN1A-218ENST00000640036 TEFQ10587 303 aa6.46□□□□□ -1.38
SCN1A-218ENST00000640036 FBXW7Q969H0 707 aa6.45□□□□□ -1.38
SCN1A-218ENST00000640036 NLRP2Q9NX02 1062 aa6.45□□□□□ -1.38
SCN1A-218ENST00000640036 SYNJ2O15056 1496 aa6.45□□□□□ -1.38
SCN1A-218ENST00000640036 RAPGEF2Q9Y4G8 1499 aa6.45□□□□□ -1.38
SCN1A-218ENST00000640036 FKBP8Q14318 412 aa6.45□□□□□ -1.38
SCN1A-218ENST00000640036 PKD2Q13563 968 aa6.45□□□□□ -1.38
SCN1A-218ENST00000640036 NEUROD2Q15784 382 aa6.45□□□□□ -1.38
SCN1A-218ENST00000640036 DIEXFQ68CQ4 756 aaKnown RBP6.45□□□□□ -1.38
SCN1A-218ENST00000640036 FTSJ3Q8IY81 847 aaKnown RBP6.45□□□□□ -1.38
SCN1A-218ENST00000640036 CNKSR2Q8WXI2 1034 aa6.44□□□□□ -1.38
SCN1A-218ENST00000640036 BEGAINQ9BUH8 593 aa6.44□□□□□ -1.38
SCN1A-218ENST00000640036 DDRGK1Q96HY6 314 aa6.44□□□□□ -1.38
SCN1A-218ENST00000640036 COG3Q96JB2 828 aa6.44□□□□□ -1.38
SCN1A-218ENST00000640036 CASC1Q6TDU7 716 aa6.44□□□□□ -1.38
SCN1A-218ENST00000640036 TOM1L2Q6ZVM7 507 aa6.44□□□□□ -1.38
SCN1A-218ENST00000640036 LMTK3Q96Q04 1460 aa6.44□□□□□ -1.38
SCN1A-218ENST00000640036 FAM9BQ8IZU0 186 aa6.43□□□□□ -1.38
SCN1A-218ENST00000640036 STK31Q9BXU1 1019 aa6.43□□□□□ -1.38
SCN1A-218ENST00000640036 AMOTL1Q8IY63 956 aa6.43□□□□□ -1.38
SCN1A-218ENST00000640036 BCL11BQ9C0K0 894 aaPredicted RBP6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms