RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 ZNF771Q7L3S4 317 aaPredicted RBP7.36□□□□□ -1.23
SCN1A-216ENST00000637968 SLC4A3P48751 1232 aa7.35□□□□□ -1.23
SCN1A-216ENST00000637968 LETM1O95202 739 aaPredicted RBP7.35□□□□□ -1.23
SCN1A-216ENST00000637968 KIF20AO95235 890 aa7.35□□□□□ -1.23
SCN1A-216ENST00000637968 PLPPR3Q6T4P5 718 aa7.35□□□□□ -1.23
SCN1A-216ENST00000637968 DCAF11Q8TEB1 546 aa7.35□□□□□ -1.23
SCN1A-216ENST00000637968 MRE11P49959 708 aa7.35□□□□□ -1.23
SCN1A-216ENST00000637968 SECISBP2LQ93073 1101 aaKnown RBP7.34□□□□□ -1.23
SCN1A-216ENST00000637968 GZF1Q9H116 711 aaPredicted RBP7.34□□□□□ -1.23
SCN1A-216ENST00000637968 MRS2Q9HD23 443 aa7.34□□□□□ -1.23
SCN1A-216ENST00000637968 E9PSI1 815 aa7.34□□□□□ -1.24
SCN1A-216ENST00000637968 UTP14CQ5TAP6 766 aaKnown RBP7.34□□□□□ -1.24
SCN1A-216ENST00000637968 GTPBP4Q9BZE4 634 aaKnown RBP7.34□□□□□ -1.24
SCN1A-216ENST00000637968 UPF2Q9HAU5 1272 aaKnown RBP7.34□□□□□ -1.24
SCN1A-216ENST00000637968 AEBP1Q8IUX7 1158 aa7.33□□□□□ -1.24
SCN1A-216ENST00000637968 MAPK8IP2Q13387 824 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-216ENST00000637968 NPM1P06748 294 aaKnown RBP eCLIP7.33□□□□□ -1.24
SCN1A-216ENST00000637968 R3HCC1Q9Y3T6 440 aaKnown RBP7.32□□□□□ -1.24
SCN1A-216ENST00000637968 CCDC66A2RUB6 948 aa7.32□□□□□ -1.24
SCN1A-216ENST00000637968 DNAJC2Q99543 621 aaKnown RBP7.32□□□□□ -1.24
SCN1A-216ENST00000637968 AXDND1Q5T1B0 1012 aaPredicted RBP7.31□□□□□ -1.24
SCN1A-216ENST00000637968 FAM193AP78312 1265 aa7.31□□□□□ -1.24
SCN1A-216ENST00000637968 CC2D1BQ5T0F9 858 aaKnown RBP7.31□□□□□ -1.24
SCN1A-216ENST00000637968 CNPY4Q8N129 248 aa7.31□□□□□ -1.24
SCN1A-216ENST00000637968 BACH2Q9BYV9 841 aa7.31□□□□□ -1.24
SCN1A-216ENST00000637968 CGNQ9P2M7 1197 aaKnown RBP7.31□□□□□ -1.24
SCN1A-216ENST00000637968 SIN3AQ96ST3 1273 aa7.31□□□□□ -1.24
SCN1A-216ENST00000637968 CEP162Q5TB80 1403 aa7.31□□□□□ -1.24
SCN1A-216ENST00000637968 CSPP1Q1MSJ5 1256 aa7.3□□□□□ -1.24
SCN1A-216ENST00000637968 DMTNQ08495 405 aa7.3□□□□□ -1.24
SCN1A-216ENST00000637968 SAMD1Q6SPF0 538 aaPredicted RBP7.3□□□□□ -1.24
SCN1A-216ENST00000637968 CCDC9Q9Y3X0 531 aaKnown RBP7.3□□□□□ -1.24
SCN1A-216ENST00000637968 BAZ1BQ9UIG0 1483 aaKnown RBP7.3□□□□□ -1.24
SCN1A-216ENST00000637968 HIRIP3Q9BW71 556 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-216ENST00000637968 POGKQ9P215 609 aa7.29□□□□□ -1.24
SCN1A-216ENST00000637968 WRNQ14191 1432 aaPredicted RBP eCLIP7.29□□□□□ -1.24
SCN1A-216ENST00000637968 HDAC5Q9UQL6 1122 aa7.29□□□□□ -1.24
SCN1A-216ENST00000637968 UQCRHLA0A096LP55 91 aa7.29□□□□□ -1.24
SCN1A-216ENST00000637968 UQCRHP07919 91 aa7.29□□□□□ -1.24
SCN1A-216ENST00000637968 TSPYL1Q9H0U9 437 aa7.28□□□□□ -1.24
SCN1A-216ENST00000637968 SLKQ9H2G2 1235 aaPredicted RBP7.28□□□□□ -1.24
SCN1A-216ENST00000637968 ISY1Q9ULR0 285 aaKnown RBP7.28□□□□□ -1.24
SCN1A-216ENST00000637968 ZNF622Q969S3 477 aaKnown RBP eCLIP7.27□□□□□ -1.25
SCN1A-216ENST00000637968 ZBED9Q6R2W3 1325 aa7.27□□□□□ -1.25
SCN1A-216ENST00000637968 TERF1P54274 439 aa7.27□□□□□ -1.25
SCN1A-216ENST00000637968 ZNF830Q96NB3 372 aaPredicted RBP7.27□□□□□ -1.25
SCN1A-216ENST00000637968 DYNC1I1O14576 645 aa7.26□□□□□ -1.25
SCN1A-216ENST00000637968 CCDC94Q9BW85 323 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-216ENST00000637968 NUDCQ9Y266 331 aa7.26□□□□□ -1.25
SCN1A-216ENST00000637968 XRCC6P12956 609 aaKnown RBP eCLIP7.26□□□□□ -1.25
SCN1A-216ENST00000637968 DHX57Q6P158 1386 aaKnown RBP7.25□□□□□ -1.25
SCN1A-216ENST00000637968 GOLGA6L22H0YM25 854 aa7.25□□□□□ -1.25
SCN1A-216ENST00000637968 PPP1R15AO75807 674 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-216ENST00000637968 KCNJ4P48050 445 aa7.25□□□□□ -1.25
SCN1A-216ENST00000637968 CNKSR2Q8WXI2 1034 aa7.25□□□□□ -1.25
SCN1A-216ENST00000637968 ZSCAN30Q86W11 494 aa7.25□□□□□ -1.25
SCN1A-216ENST00000637968 GRPEL1Q9HAV7 217 aa7.25□□□□□ -1.25
SCN1A-216ENST00000637968 FBXO3Q9UK99 471 aa7.25□□□□□ -1.25
SCN1A-216ENST00000637968 CBX1P83916 185 aa7.24□□□□□ -1.25
SCN1A-216ENST00000637968 HMGB1P09429 215 aaKnown RBP7.24□□□□□ -1.25
SCN1A-216ENST00000637968 CHAF1AQ13111 956 aaPredicted RBP7.24□□□□□ -1.25
SCN1A-216ENST00000637968 CCDC173Q0VFZ6 552 aa7.24□□□□□ -1.25
SCN1A-216ENST00000637968 CHMP7Q8WUX9 453 aaPredicted RBP7.24□□□□□ -1.25
SCN1A-216ENST00000637968 ERCC6Q03468 1493 aa7.23□□□□□ -1.25
SCN1A-216ENST00000637968 DDX11L8A8MPP1 907 aa7.23□□□□□ -1.25
SCN1A-216ENST00000637968 OFD1O75665 1012 aa7.23□□□□□ -1.25
SCN1A-216ENST00000637968 TMEM51Q9NW97 253 aa7.23□□□□□ -1.25
SCN1A-216ENST00000637968 FAM161AQ3B820 660 aa7.23□□□□□ -1.25
SCN1A-216ENST00000637968 PLCD4Q9BRC7 762 aa7.23□□□□□ -1.25
SCN1A-216ENST00000637968 VGFO15240 615 aaPredicted RBP7.22□□□□□ -1.25
SCN1A-216ENST00000637968 CALRP27797 417 aaKnown RBP7.22□□□□□ -1.25
SCN1A-216ENST00000637968 KIF3AQ9Y496 699 aa7.22□□□□□ -1.25
SCN1A-216ENST00000637968 TONSLQ96HA7 1378 aa7.21□□□□□ -1.25
SCN1A-216ENST00000637968 TIGD1Q96MW7 591 aa7.21□□□□□ -1.25
SCN1A-216ENST00000637968 TMC1Q8TDI8 760 aa7.21□□□□□ -1.26
SCN1A-216ENST00000637968 PANK2Q9BZ23 570 aa7.21□□□□□ -1.26
SCN1A-216ENST00000637968 GOLGA6L6A8MZA4 724 aa7.21□□□□□ -1.26
SCN1A-216ENST00000637968 RGS22Q8NE09 1264 aa7.21□□□□□ -1.26
SCN1A-216ENST00000637968 SASS6Q6UVJ0 657 aa7.2□□□□□ -1.26
SCN1A-216ENST00000637968 CALCOCO1Q9P1Z2 691 aa7.2□□□□□ -1.26
SCN1A-216ENST00000637968 TRAK2O60296 914 aa7.2□□□□□ -1.26
SCN1A-216ENST00000637968 RALBP1Q15311 655 aa7.2□□□□□ -1.26
SCN1A-216ENST00000637968 GBP4Q96PP9 640 aa7.2□□□□□ -1.26
SCN1A-216ENST00000637968 HMGN5P82970 282 aaKnown RBP7.2□□□□□ -1.26
SCN1A-216ENST00000637968 LMOD3Q0VAK6 560 aa7.2□□□□□ -1.26
SCN1A-216ENST00000637968 KIAA2012Q0VF49 1180 aa7.19□□□□□ -1.26
SCN1A-216ENST00000637968 SKOR2Q2VWA4 1001 aaPredicted RBP7.19□□□□□ -1.26
SCN1A-216ENST00000637968 NBPF1Q3BBV0 1214 aa7.19□□□□□ -1.26
SCN1A-216ENST00000637968 P3H3Q8IVL6 736 aa7.19□□□□□ -1.26
SCN1A-216ENST00000637968 ESF1Q9H501 851 aaKnown RBP7.19□□□□□ -1.26
SCN1A-216ENST00000637968 CERS3Q8IU89 383 aa7.19□□□□□ -1.26
SCN1A-216ENST00000637968 TNIKQ9UKE5 1360 aa7.19□□□□□ -1.26
SCN1A-216ENST00000637968 GOLGA6L1Q8N7Z2 621 aa7.18□□□□□ -1.26
SCN1A-216ENST00000637968 TRIM6-TRIM34B2RNG4 842 aa7.18□□□□□ -1.26
SCN1A-216ENST00000637968 TRIM34Q9BYJ4 488 aa7.18□□□□□ -1.26
SCN1A-216ENST00000637968 EXOC6Q8TAG9 804 aa7.18□□□□□ -1.26
SCN1A-216ENST00000637968 NASPP49321 788 aaPredicted RBP7.18□□□□□ -1.26
SCN1A-216ENST00000637968 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-216ENST00000637968 BANK1Q8NDB2 785 aa7.17□□□□□ -1.26
SCN1A-216ENST00000637968 CLSTN1O94985 981 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms