RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 HECW1Q76N89 1606 aa32.18■■■□□ 2.74
CLN3-262ENST00000637699 MAGI2Q86UL8 1455 aa32.18■■■□□ 2.74
CLN3-262ENST00000637699 SIGLEC1Q9BZZ2 1709 aa32.18■■■□□ 2.74
CLN3-262ENST00000637699 HSPA2P54652 639 aa32.16■■■□□ 2.74
CLN3-262ENST00000637699 FMN1Q68DA7 1419 aa32.16■■■□□ 2.74
CLN3-262ENST00000637699 EFCAB2Q5VUJ9 269 aa32.13■■■□□ 2.73
CLN3-262ENST00000637699 CDK11AQ9UQ88 783 aaPredicted RBP32.13■■■□□ 2.73
CLN3-262ENST00000637699 ARHGAP35Q9NRY4 1499 aa32.12■■■□□ 2.73
CLN3-262ENST00000637699 MYO5CQ9NQX4 1742 aa32.06■■■□□ 2.72
CLN3-262ENST00000637699 ATP10AO60312 1499 aa32.05■■■□□ 2.72
CLN3-262ENST00000637699 FER1L4A9Z1Z3 1794 aa32.04■■■□□ 2.72
CLN3-262ENST00000637699 KIF14Q15058 1648 aa32.04■■■□□ 2.72
CLN3-262ENST00000637699 CHIC1Q5VXU3 224 aa32.01■■■□□ 2.71
CLN3-262ENST00000637699 TROQ12816 1431 aaPredicted RBP32■■■□□ 2.71
CLN3-262ENST00000637699 C9orf84Q5VXU9 1444 aa32■■■□□ 2.71
CLN3-262ENST00000637699 AFAP1Q8N556 730 aa31.98■■■□□ 2.71
CLN3-262ENST00000637699 ARHGAP5Q13017 1502 aa31.98■■■□□ 2.71
CLN3-262ENST00000637699 MYT1LQ9UL68 1186 aa31.97■■■□□ 2.71
CLN3-262ENST00000637699 ARHGEF12Q9NZN5 1544 aa31.96■■■□□ 2.71
CLN3-262ENST00000637699 CLIP1P30622 1438 aa31.96■■■□□ 2.71
CLN3-262ENST00000637699 ZNF518AQ6AHZ1 1483 aa31.95■■■□□ 2.7
CLN3-262ENST00000637699 CEBPAP49715 358 aaPredicted RBP31.94■■■□□ 2.7
CLN3-262ENST00000637699 LRRIQ1Q96JM4 1722 aa31.91■■■□□ 2.7
CLN3-262ENST00000637699 KDM5CP41229 1560 aa31.87■■■□□ 2.69
CLN3-262ENST00000637699 CERKQ8TCT0 537 aa31.85■■■□□ 2.69
CLN3-262ENST00000637699 CDC42BPBQ9Y5S2 1711 aa31.83■■■□□ 2.69
CLN3-262ENST00000637699 PREX1Q8TCU6 1659 aa31.82■■■□□ 2.68
CLN3-262ENST00000637699 DIP2CQ9Y2E4 1556 aa31.81■■■□□ 2.68
CLN3-262ENST00000637699 CASKIN1Q8WXD9 1431 aa31.78■■■□□ 2.68
CLN3-262ENST00000637699 TRAPPC8Q9Y2L5 1435 aa31.77■■■□□ 2.68
CLN3-262ENST00000637699 MLH3Q9UHC1 1453 aa31.77■■■□□ 2.68
CLN3-262ENST00000637699 CCDC18Q5T9S5 1454 aa31.76■■■□□ 2.67
CLN3-262ENST00000637699 PREX2Q70Z35 1606 aa31.75■■■□□ 2.67
CLN3-262ENST00000637699 ABCA6Q8N139 1617 aa31.75■■■□□ 2.67
CLN3-262ENST00000637699 REREQ9P2R6 1566 aa31.73■■■□□ 2.67
CLN3-262ENST00000637699 ABCC1P33527 1531 aa31.73■■■□□ 2.67
CLN3-262ENST00000637699 UHRF1BP1Q6BDS2 1440 aa31.73■■■□□ 2.67
CLN3-262ENST00000637699 ESF1Q9H501 851 aaKnown RBP31.71■■■□□ 2.67
CLN3-262ENST00000637699 SETD1BQ9UPS6 1966 aaKnown RBP31.69■■■□□ 2.66
CLN3-262ENST00000637699 DMRT2Q9Y5R5 561 aa31.69■■■□□ 2.66
CLN3-262ENST00000637699 ITSN2Q9NZM3 1697 aa31.68■■■□□ 2.66
CLN3-262ENST00000637699 ZNF777Q9ULD5 760 aaPredicted RBP31.67■■■□□ 2.66
CLN3-262ENST00000637699 STRCQ7RTU9 1775 aa31.66■■■□□ 2.66
CLN3-262ENST00000637699 AGLP35573 1532 aa31.65■■■□□ 2.66
CLN3-262ENST00000637699 C3P01024 1663 aa31.64■■■□□ 2.66
CLN3-262ENST00000637699 CDC42BPAQ5VT25 1732 aa31.64■■■□□ 2.66
CLN3-262ENST00000637699 FYCO1Q9BQS8 1478 aa31.62■■■□□ 2.65
CLN3-262ENST00000637699 KIDINS220Q9ULH0 1771 aa31.62■■■□□ 2.65
CLN3-262ENST00000637699 HNRNPMP52272 730 aaKnown RBP eCLIP31.56■■■□□ 2.64
CLN3-262ENST00000637699 SAMD9LQ8IVG5 1584 aa31.56■■■□□ 2.64
CLN3-262ENST00000637699 GPATCH8Q9UKJ3 1502 aaKnown RBP31.54■■■□□ 2.64
CLN3-262ENST00000637699 SPAG9O60271 1321 aaKnown RBP31.53■■■□□ 2.64
CLN3-262ENST00000637699 CNTLNQ9NXG0 1405 aa31.53■■■□□ 2.64
CLN3-262ENST00000637699 SYCP2Q9BX26 1530 aa31.52■■■□□ 2.64
CLN3-262ENST00000637699 PTPRTO14522 1441 aa31.5■■■□□ 2.63
CLN3-262ENST00000637699 CFDP1Q9UEE9 299 aaPredicted RBP31.48■■■□□ 2.63
CLN3-262ENST00000637699 ZMYM3Q14202 1370 aa31.44■■■□□ 2.62
CLN3-262ENST00000637699 SUPT6HQ7KZ85 1726 aaKnown RBP31.44■■■□□ 2.62
CLN3-262ENST00000637699 CCNB3Q8WWL7 1395 aa31.43■■■□□ 2.62
CLN3-262ENST00000637699 KIAA1107Q9UPP5 1409 aa31.41■■■□□ 2.62
CLN3-262ENST00000637699 ATP7AQ04656 1500 aa31.41■■■□□ 2.62
CLN3-262ENST00000637699 NCOA1Q15788 1441 aa31.41■■■□□ 2.62
CLN3-262ENST00000637699 MTUS2Q5JR59 1369 aa31.4■■■□□ 2.62
CLN3-262ENST00000637699 NPATQ14207 1427 aa31.4■■■□□ 2.62
CLN3-262ENST00000637699 PLEKHH2Q8IVE3 1493 aa31.4■■■□□ 2.62
CLN3-262ENST00000637699 MROH2AA6NES4 1674 aa31.39■■■□□ 2.62
CLN3-262ENST00000637699 A2MP01023 1474 aa31.37■■■□□ 2.61
CLN3-262ENST00000637699 GGT6Q6P531 493 aa31.36■■■□□ 2.61
CLN3-262ENST00000637699 CAMSAP1Q5T5Y3 1602 aa31.35■■■□□ 2.61
CLN3-262ENST00000637699 INO80Q9ULG1 1556 aaPredicted RBP31.35■■■□□ 2.61
CLN3-262ENST00000637699 LTBP4Q8N2S1 1624 aa31.35■■■□□ 2.61
CLN3-262ENST00000637699 ZNF644Q9H582 1327 aaPredicted RBP31.33■■■□□ 2.61
CLN3-262ENST00000637699 CLTCQ00610 1675 aaKnown RBP31.33■■■□□ 2.61
CLN3-262ENST00000637699 DISP3Q9P2K9 1392 aa31.32■■■□□ 2.6
CLN3-262ENST00000637699 NCKAP5LQ9HCH0 1330 aa31.32■■■□□ 2.6
CLN3-262ENST00000637699 PLXNC1O60486 1568 aa31.32■■■□□ 2.6
CLN3-262ENST00000637699 PTPRKQ15262 1439 aa31.26■■■□□ 2.6
CLN3-262ENST00000637699 TIAM1Q13009 1591 aa31.24■■■□□ 2.59
CLN3-262ENST00000637699 ILDR2Q71H61 639 aa31.23■■■□□ 2.59
CLN3-262ENST00000637699 MYO3AQ8NEV4 1616 aa31.22■■■□□ 2.59
CLN3-262ENST00000637699 ADGBQ8N7X0 1667 aa31.22■■■□□ 2.59
CLN3-262ENST00000637699 IQSEC2Q5JU85 1478 aa31.21■■■□□ 2.59
CLN3-262ENST00000637699 PPP6R1Q9UPN7 881 aa31.21■■■□□ 2.59
CLN3-262ENST00000637699 ZNF335Q9H4Z2 1342 aaPredicted RBP31.21■■■□□ 2.59
CLN3-262ENST00000637699 MBD5Q9P267 1494 aa31.21■■■□□ 2.59
CLN3-262ENST00000637699 EHBP1L1Q8N3D4 1523 aa31.2■■■□□ 2.59
CLN3-262ENST00000637699 PKD2Q13563 968 aa31.19■■■□□ 2.58
CLN3-262ENST00000637699 CEP170BQ9Y4F5 1589 aaPredicted RBP31.18■■■□□ 2.58
CLN3-262ENST00000637699 ZNF142P52746 1687 aaPredicted RBP31.18■■■□□ 2.58
CLN3-262ENST00000637699 CEP162Q5TB80 1403 aa31.16■■■□□ 2.58
CLN3-262ENST00000637699 PLA2R1Q13018 1463 aa31.16■■■□□ 2.58
CLN3-262ENST00000637699 RTEL1-TNFRSF6BF6WH68 1400 aa31.15■■■□□ 2.58
CLN3-262ENST00000637699 DHX29Q7Z478 1369 aaKnown RBP31.14■■■□□ 2.58
CLN3-262ENST00000637699 TCOF1Q13428 1488 aaKnown RBP31.12■■■□□ 2.57
CLN3-262ENST00000637699 UBAP1LF5GYI3 381 aa31.1■■■□□ 2.57
CLN3-262ENST00000637699 KIF3BO15066 747 aa31.1■■■□□ 2.57
CLN3-262ENST00000637699 SPATA31D1Q6ZQQ2 1576 aa31.08■■■□□ 2.57
CLN3-262ENST00000637699 FBXO31Q5XUX0 539 aaPredicted RBP31.07■■■□□ 2.56
CLN3-262ENST00000637699 A2ML1A8K2U0 1454 aa31.07■■■□□ 2.56
CLN3-262ENST00000637699 SOCS7O14512 581 aa31.05■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms