RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 KIF14Q15058 1648 aa16.7■□□□□ 0.26
CLN6-217ENST00000636964 HFM1A2PYH4 1435 aa16.69■□□□□ 0.26
CLN6-217ENST00000636964 NAIPQ13075 1403 aa16.69■□□□□ 0.26
CLN6-217ENST00000636964 SHROOM2Q13796 1616 aa16.68■□□□□ 0.26
CLN6-217ENST00000636964 EIF5BO60841 1220 aaKnown RBP16.67■□□□□ 0.26
CLN6-217ENST00000636964 UACAQ9BZF9 1416 aa16.65■□□□□ 0.26
CLN6-217ENST00000636964 GPATCH8Q9UKJ3 1502 aaKnown RBP16.65■□□□□ 0.26
CLN6-217ENST00000636964 YTHDC1Q96MU7 727 aaKnown RBP16.63■□□□□ 0.25
CLN6-217ENST00000636964 TRIM52Q96A61 297 aa16.63■□□□□ 0.25
CLN6-217ENST00000636964 CLASP1Q7Z460 1538 aa16.63■□□□□ 0.25
CLN6-217ENST00000636964 DAPK1P53355 1430 aa16.62■□□□□ 0.25
CLN6-217ENST00000636964 ABCC5O15440 1437 aa16.62■□□□□ 0.25
CLN6-217ENST00000636964 KCNH8Q96L42 1107 aa16.6■□□□□ 0.25
CLN6-217ENST00000636964 CAMSAP2Q08AD1 1489 aa16.59■□□□□ 0.25
CLN6-217ENST00000636964 ADCY10Q96PN6 1610 aa16.59■□□□□ 0.25
CLN6-217ENST00000636964 KDM6BO15054 1643 aa16.58■□□□□ 0.24
CLN6-217ENST00000636964 ABCC10Q5T3U5 1492 aa16.57■□□□□ 0.24
CLN6-217ENST00000636964 DNMT1P26358 1616 aaKnown RBP16.56■□□□□ 0.24
CLN6-217ENST00000636964 ITSN2Q9NZM3 1697 aa16.56■□□□□ 0.24
CLN6-217ENST00000636964 ABCC2Q92887 1545 aa16.54■□□□□ 0.24
CLN6-217ENST00000636964 CDC42BPAQ5VT25 1732 aa16.54■□□□□ 0.24
CLN6-217ENST00000636964 HNRNPMP52272 730 aaKnown RBP eCLIP16.54■□□□□ 0.24
CLN6-217ENST00000636964 MIER1Q8N108 512 aa16.53■□□□□ 0.24
CLN6-217ENST00000636964 GCC2Q8IWJ2 1684 aa16.52■□□□□ 0.24
CLN6-217ENST00000636964 FOXD1Q16676 465 aa16.52■□□□□ 0.24
CLN6-217ENST00000636964 AKNAQ7Z591 1439 aa16.52■□□□□ 0.23
CLN6-217ENST00000636964 OSCARQ8IYS5 282 aa16.52■□□□□ 0.23
CLN6-217ENST00000636964 ROCK1Q13464 1354 aa16.51■□□□□ 0.23
CLN6-217ENST00000636964 MPHOSPH9Q99550 1183 aa16.5■□□□□ 0.23
CLN6-217ENST00000636964 NCOA1Q15788 1441 aa16.47■□□□□ 0.23
CLN6-217ENST00000636964 TSPY4P0CV99 314 aa16.47■□□□□ 0.23
CLN6-217ENST00000636964 TSPY10P0CW01 314 aa16.47■□□□□ 0.23
CLN6-217ENST00000636964 DENND4BO75064 1496 aaPredicted RBP16.46■□□□□ 0.23
CLN6-217ENST00000636964 ZCCHC11Q5TAX3 1644 aaKnown RBP16.45■□□□□ 0.22
CLN6-217ENST00000636964 TTC37Q6PGP7 1564 aa16.45■□□□□ 0.22
CLN6-217ENST00000636964 TONSLQ96HA7 1378 aa16.45■□□□□ 0.22
CLN6-217ENST00000636964 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.45■□□□□ 0.223e-7■■■□□ 19.1
CLN6-217ENST00000636964 PPP1R15AO75807 674 aaPredicted RBP16.44■□□□□ 0.22
CLN6-217ENST00000636964 SLC4A1APQ9BWU0 796 aaKnown RBP16.44■□□□□ 0.22
CLN6-217ENST00000636964 CDC42BPBQ9Y5S2 1711 aa16.44■□□□□ 0.22
CLN6-217ENST00000636964 ANKRD30AQ9BXX3 1397 aa16.44■□□□□ 0.22
CLN6-217ENST00000636964 KDM5BQ9UGL1 1544 aa16.42■□□□□ 0.22
CLN6-217ENST00000636964 UHRF1BP1LA0JNW5 1464 aa16.42■□□□□ 0.22
CLN6-217ENST00000636964 ARHGAP5Q13017 1502 aa16.42■□□□□ 0.22
CLN6-217ENST00000636964 C9orf84Q5VXU9 1444 aa16.42■□□□□ 0.22
CLN6-217ENST00000636964 TIMELESSQ9UNS1 1208 aa16.42■□□□□ 0.22
CLN6-217ENST00000636964 SAMD9LQ8IVG5 1584 aa16.41■□□□□ 0.22
CLN6-217ENST00000636964 CROCC2H7BZ55 1655 aa16.4■□□□□ 0.22
CLN6-217ENST00000636964 PREX2Q70Z35 1606 aa16.4■□□□□ 0.22
CLN6-217ENST00000636964 HIRIP3Q9BW71 556 aaPredicted RBP16.4■□□□□ 0.22
CLN6-217ENST00000636964 MBD5Q9P267 1494 aa16.4■□□□□ 0.22
CLN6-217ENST00000636964 ADGBQ8N7X0 1667 aa16.39■□□□□ 0.21
CLN6-217ENST00000636964 ADGRL2O95490 1459 aa16.39■□□□□ 0.21
CLN6-217ENST00000636964 ANKRD50Q9ULJ7 1429 aa16.38■□□□□ 0.21
CLN6-217ENST00000636964 PLEKHG5O94827 1062 aa16.37■□□□□ 0.21
CLN6-217ENST00000636964 SYCP2Q9BX26 1530 aa16.36■□□□□ 0.21
CLN6-217ENST00000636964 KIF15Q9NS87 1388 aa16.35■□□□□ 0.21
CLN6-217ENST00000636964 CCDC141Q6ZP82 1450 aa16.35■□□□□ 0.21
CLN6-217ENST00000636964 EFCAB2Q5VUJ9 269 aa16.34■□□□□ 0.21
CLN6-217ENST00000636964 MYO5CQ9NQX4 1742 aa16.34■□□□□ 0.21
CLN6-217ENST00000636964 SHANK2Q9UPX8 1470 aa16.34■□□□□ 0.21
CLN6-217ENST00000636964 PLCH2O75038 1416 aa16.33■□□□□ 0.21
CLN6-217ENST00000636964 RSPH4AQ5TD94 716 aa16.33■□□□□ 0.2
CLN6-217ENST00000636964 ARHGEF5Q12774 1597 aa16.33■□□□□ 0.2
CLN6-217ENST00000636964 PZPP20742 1482 aa16.33■□□□□ 0.2
CLN6-217ENST00000636964 PKD2Q13563 968 aa16.33■□□□□ 0.2
CLN6-217ENST00000636964 SUPT16HQ9Y5B9 1047 aaKnown RBP16.33■□□□□ 0.2
CLN6-217ENST00000636964 ANKRD30BQ9BXX2 1392 aa16.32■□□□□ 0.2
CLN6-217ENST00000636964 NUP155O75694 1391 aa16.32■□□□□ 0.2
CLN6-217ENST00000636964 ANP32EQ9BTT0 268 aa16.32■□□□□ 0.2
CLN6-217ENST00000636964 L3MBTL2Q969R5 705 aa16.31■□□□□ 0.2
CLN6-217ENST00000636964 TSHZ2Q9NRE2 1034 aa16.31■□□□□ 0.2
CLN6-217ENST00000636964 ARHGEF12Q9NZN5 1544 aa16.31■□□□□ 0.2
CLN6-217ENST00000636964 NPM1P06748 294 aaKnown RBP eCLIP16.3■□□□□ 0.2
CLN6-217ENST00000636964 WDR7Q9Y4E6 1490 aa16.3■□□□□ 0.2
CLN6-217ENST00000636964 ASXL2Q76L83 1435 aa16.28■□□□□ 0.2
CLN6-217ENST00000636964 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.28■□□□□ 0.2
CLN6-217ENST00000636964 AFAP1Q8N556 730 aa16.28■□□□□ 0.2
CLN6-217ENST00000636964 KIAA1107Q9UPP5 1409 aa16.27■□□□□ 0.19
CLN6-217ENST00000636964 TRAPPC8Q9Y2L5 1435 aa16.26■□□□□ 0.19
CLN6-217ENST00000636964 PLEKHH2Q8IVE3 1493 aa16.25■□□□□ 0.19
CLN6-217ENST00000636964 DDX10Q13206 875 aaKnown RBP16.24■□□□□ 0.19
CLN6-217ENST00000636964 RPRD2Q5VT52 1461 aaKnown RBP16.23■□□□□ 0.19
CLN6-217ENST00000636964 MYT1LQ9UL68 1186 aa16.22■□□□□ 0.19
CLN6-217ENST00000636964 CYB5RLQ6IPT4 315 aa16.22■□□□□ 0.19
CLN6-217ENST00000636964 ABCC1P33527 1531 aa16.21■□□□□ 0.19
CLN6-217ENST00000636964 SPAG9O60271 1321 aaKnown RBP16.2■□□□□ 0.18
CLN6-217ENST00000636964 NBPF8Q3BBV2 869 aa16.2■□□□□ 0.18
CLN6-217ENST00000636964 FANCAO15360 1455 aa16.2■□□□□ 0.18
CLN6-217ENST00000636964 ZNF326Q5BKZ1 582 aaKnown RBP16.19■□□□□ 0.18
CLN6-217ENST00000636964 MAST1Q9Y2H9 1570 aa16.19■□□□□ 0.18
CLN6-217ENST00000636964 ABCA9Q8IUA7 1624 aa16.17■□□□□ 0.18
CLN6-217ENST00000636964 TEX14Q8IWB6 1497 aa16.16■□□□□ 0.18
CLN6-217ENST00000636964 SCAPERQ9BY12 1400 aa16.16■□□□□ 0.18
CLN6-217ENST00000636964 HSPA5P11021 654 aaKnown RBP16.16■□□□□ 0.18
CLN6-217ENST00000636964 FAM135AQ9P2D6 1515 aa16.15■□□□□ 0.18
CLN6-217ENST00000636964 ADGRL1O94910 1474 aa16.14■□□□□ 0.17
CLN6-217ENST00000636964 KDM5DQ9BY66 1539 aa16.14■□□□□ 0.17
CLN6-217ENST00000636964 ARAP3Q8WWN8 1544 aa16.14■□□□□ 0.17
CLN6-217ENST00000636964 PLXNC1O60486 1568 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms