RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 TROQ12816 1431 aaPredicted RBP17.9■□□□□ 0.46
LINC00540-203ENST00000631321 RPRD2Q5VT52 1461 aaKnown RBP17.89■□□□□ 0.45
LINC00540-203ENST00000631321 MYT1Q01538 1121 aa17.89■□□□□ 0.45
LINC00540-203ENST00000631321 WASHC2AQ641Q2 1341 aa17.88■□□□□ 0.45
LINC00540-203ENST00000631321 L3MBTL2Q969R5 705 aa17.88■□□□□ 0.45
LINC00540-203ENST00000631321 EIF4G2P78344 907 aaKnown RBP eCLIP17.87■□□□□ 0.458e-7■■■■■ 28.7
LINC00540-203ENST00000631321 SYNJ2O15056 1496 aa17.86■□□□□ 0.45
LINC00540-203ENST00000631321 ZNF644Q9H582 1327 aaPredicted RBP17.86■□□□□ 0.45
LINC00540-203ENST00000631321 TEX14Q8IWB6 1497 aa17.86■□□□□ 0.45
LINC00540-203ENST00000631321 CEP170Q5SW79 1584 aa17.85■□□□□ 0.45
LINC00540-203ENST00000631321 PRG4Q92954 1404 aaPredicted RBP17.84■□□□□ 0.45
LINC00540-203ENST00000631321 ADCY10Q96PN6 1610 aa17.84■□□□□ 0.45
LINC00540-203ENST00000631321 TSHZ2Q9NRE2 1034 aa17.83■□□□□ 0.45
LINC00540-203ENST00000631321 CAMSAP2Q08AD1 1489 aa17.83■□□□□ 0.44
LINC00540-203ENST00000631321 FKBP8Q14318 412 aa17.83■□□□□ 0.44
LINC00540-203ENST00000631321 NCOA1Q15788 1441 aa17.82■□□□□ 0.44
LINC00540-203ENST00000631321 FOXD1Q16676 465 aa17.82■□□□□ 0.44
LINC00540-203ENST00000631321 GPATCH8Q9UKJ3 1502 aaKnown RBP17.82■□□□□ 0.44
LINC00540-203ENST00000631321 ADGRL2O95490 1459 aa17.82■□□□□ 0.44
LINC00540-203ENST00000631321 NUP160Q12769 1436 aa17.82■□□□□ 0.44
LINC00540-203ENST00000631321 CNTLNQ9NXG0 1405 aa17.82■□□□□ 0.44
LINC00540-203ENST00000631321 ITSN2Q9NZM3 1697 aa17.81■□□□□ 0.44
LINC00540-203ENST00000631321 PLB1Q6P1J6 1458 aa17.81■□□□□ 0.44
LINC00540-203ENST00000631321 PZPP20742 1482 aa17.8■□□□□ 0.44
LINC00540-203ENST00000631321 CHMP7Q8WUX9 453 aaPredicted RBP17.8■□□□□ 0.44
LINC00540-203ENST00000631321 CARMIL2Q6F5E8 1435 aa17.79■□□□□ 0.44
LINC00540-203ENST00000631321 ERCC6Q03468 1493 aa17.79■□□□□ 0.44
LINC00540-203ENST00000631321 SLC4A1APQ9BWU0 796 aaKnown RBP17.79■□□□□ 0.44
LINC00540-203ENST00000631321 CFDP1Q9UEE9 299 aaPredicted RBP17.79■□□□□ 0.44
LINC00540-203ENST00000631321 CCDC7Q96M83 1385 aa17.79■□□□□ 0.44
LINC00540-203ENST00000631321 SPATA31E1Q6ZUB1 1445 aa17.78■□□□□ 0.44
LINC00540-203ENST00000631321 NEFLP07196 543 aa17.78■□□□□ 0.44
LINC00540-203ENST00000631321 NBPF8Q3BBV2 869 aa17.78■□□□□ 0.44
LINC00540-203ENST00000631321 ADGBQ8N7X0 1667 aa17.77■□□□□ 0.44
LINC00540-203ENST00000631321 KIF14Q15058 1648 aa17.76■□□□□ 0.43
LINC00540-203ENST00000631321 CROCC2H7BZ55 1655 aa17.75■□□□□ 0.43
LINC00540-203ENST00000631321 C11orf95C9JLR9 678 aaPredicted RBP17.74■□□□□ 0.43
LINC00540-203ENST00000631321 JPH4Q96JJ6 628 aa17.74■□□□□ 0.43
LINC00540-203ENST00000631321 MBD5Q9P267 1494 aa17.73■□□□□ 0.43
LINC00540-203ENST00000631321 BCANQ96GW7 911 aa17.73■□□□□ 0.43
LINC00540-203ENST00000631321 ABCA8O94911 1581 aa17.73■□□□□ 0.43
LINC00540-203ENST00000631321 KIAA1107Q9UPP5 1409 aa17.73■□□□□ 0.43
LINC00540-203ENST00000631321 ANKRD30AQ9BXX3 1397 aa17.72■□□□□ 0.43
LINC00540-203ENST00000631321 ABCC10Q5T3U5 1492 aa17.71■□□□□ 0.43
LINC00540-203ENST00000631321 SHANK2Q9UPX8 1470 aa17.7■□□□□ 0.42
LINC00540-203ENST00000631321 HNRNPUQ00839 825 aaKnown RBP eCLIP17.69■□□□□ 0.42
LINC00540-203ENST00000631321 PRKRIP1Q9H875 184 aaPredicted RBP17.69■□□□□ 0.42
LINC00540-203ENST00000631321 POLR1AO95602 1720 aaPredicted RBP17.67■□□□□ 0.42
LINC00540-203ENST00000631321 KIF7Q2M1P5 1343 aa17.67■□□□□ 0.42
LINC00540-203ENST00000631321 ATP10BO94823 1461 aa17.67■□□□□ 0.42
LINC00540-203ENST00000631321 ANKRD50Q9ULJ7 1429 aa17.66■□□□□ 0.42
LINC00540-203ENST00000631321 PLEKHD1A6NEE1 506 aa17.66■□□□□ 0.42
LINC00540-203ENST00000631321 FBLN2P98095 1184 aa17.66■□□□□ 0.42
LINC00540-203ENST00000631321 ZNF777Q9ULD5 760 aaPredicted RBP17.64■□□□□ 0.42
LINC00540-203ENST00000631321 CDC42BPAQ5VT25 1732 aa17.64■□□□□ 0.41
LINC00540-203ENST00000631321 KDM5DQ9BY66 1539 aa17.64■□□□□ 0.41
LINC00540-203ENST00000631321 PKD2Q13563 968 aa17.63■□□□□ 0.41
LINC00540-203ENST00000631321 CCDC184Q52MB2 194 aa17.63■□□□□ 0.41
LINC00540-203ENST00000631321 C9orf84Q5VXU9 1444 aa17.63■□□□□ 0.41
LINC00540-203ENST00000631321 UHRF1BP1Q6BDS2 1440 aa17.62■□□□□ 0.41
LINC00540-203ENST00000631321 ARID4BQ4LE39 1312 aaPredicted RBP17.6■□□□□ 0.41
LINC00540-203ENST00000631321 ARHGEF5Q12774 1597 aa17.6■□□□□ 0.41
LINC00540-203ENST00000631321 PTPRGP23470 1445 aa17.59■□□□□ 0.41
LINC00540-203ENST00000631321 ARHGEF12Q9NZN5 1544 aa17.58■□□□□ 0.41
LINC00540-203ENST00000631321 ERICH6BQ5W0A0 696 aa17.58■□□□□ 0.41
LINC00540-203ENST00000631321 USP47Q96K76 1375 aa17.58■□□□□ 0.4
LINC00540-203ENST00000631321 DHX29Q7Z478 1369 aaKnown RBP17.57■□□□□ 0.4
LINC00540-203ENST00000631321 MRS2Q9HD23 443 aa17.57■□□□□ 0.4
LINC00540-203ENST00000631321 NUP155O75694 1391 aa17.57■□□□□ 0.4
LINC00540-203ENST00000631321 RALGAPBQ86X10 1494 aa17.57■□□□□ 0.4
LINC00540-203ENST00000631321 KDM5CP41229 1560 aa17.56■□□□□ 0.4
LINC00540-203ENST00000631321 ZBED9Q6R2W3 1325 aa17.56■□□□□ 0.4
LINC00540-203ENST00000631321 TSPY4P0CV99 314 aa17.55■□□□□ 0.4
LINC00540-203ENST00000631321 TSPY10P0CW01 314 aa17.55■□□□□ 0.4
LINC00540-203ENST00000631321 BCORL1Q5H9F3 1711 aa17.54■□□□□ 0.4
LINC00540-203ENST00000631321 KIF15Q9NS87 1388 aa17.53■□□□□ 0.4
LINC00540-203ENST00000631321 FAM9BQ8IZU0 186 aa17.51■□□□□ 0.39
LINC00540-203ENST00000631321 CCDC141Q6ZP82 1450 aa17.51■□□□□ 0.39
LINC00540-203ENST00000631321 ROCK2O75116 1388 aaKnown RBP17.5■□□□□ 0.39
LINC00540-203ENST00000631321 RSPH4AQ5TD94 716 aa17.5■□□□□ 0.39
LINC00540-203ENST00000631321 RBM19Q9Y4C8 960 aaKnown RBP17.49■□□□□ 0.39
LINC00540-203ENST00000631321 PREX2Q70Z35 1606 aa17.49■□□□□ 0.39
LINC00540-203ENST00000631321 SAMD9LQ8IVG5 1584 aa17.48■□□□□ 0.39
LINC00540-203ENST00000631321 HNRNPMP52272 730 aaKnown RBP eCLIP17.48■□□□□ 0.39
LINC00540-203ENST00000631321 ZNF326Q5BKZ1 582 aaKnown RBP17.47■□□□□ 0.39
LINC00540-203ENST00000631321 CDC42BPBQ9Y5S2 1711 aa17.45■□□□□ 0.38
LINC00540-203ENST00000631321 MAST1Q9Y2H9 1570 aa17.45■□□□□ 0.38
LINC00540-203ENST00000631321 FAM135AQ9P2D6 1515 aa17.44■□□□□ 0.38
LINC00540-203ENST00000631321 CARD11Q9BXL7 1154 aa17.44■□□□□ 0.38
LINC00540-203ENST00000631321 PPP4R2Q9NY27 417 aa17.44■□□□□ 0.38
LINC00540-203ENST00000631321 ANP32EQ9BTT0 268 aa17.43■□□□□ 0.38
LINC00540-203ENST00000631321 IRX6P78412 446 aaPredicted RBP17.43■□□□□ 0.38
LINC00540-203ENST00000631321 SHROOM2Q13796 1616 aa17.42■□□□□ 0.38
LINC00540-203ENST00000631321 SMG6Q86US8 1419 aaKnown RBP17.42■□□□□ 0.38
LINC00540-203ENST00000631321 UNC13BO14795 1591 aa17.4■□□□□ 0.38
LINC00540-203ENST00000631321 KTN1Q86UP2 1357 aaKnown RBP17.39■□□□□ 0.37
LINC00540-203ENST00000631321 SYCP2Q9BX26 1530 aa17.38■□□□□ 0.37
LINC00540-203ENST00000631321 DCAF11Q8TEB1 546 aa17.38■□□□□ 0.37
LINC00540-203ENST00000631321 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.38■□□□□ 0.37
LINC00540-203ENST00000631321 PLEKHH2Q8IVE3 1493 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms