RNA–Protein interactions for RNA: ENST00000629912.1

NEK3-211, Transcript of NIMA related kinase 3, humanhuman

TSL 5 BASIC

Gene NEK3, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-211ENST00000629912 DAPK1P53355 1430 aa8.09□□□□□ -1.11
NEK3-211ENST00000629912 KIF14Q15058 1648 aa8.07□□□□□ -1.12
NEK3-211ENST00000629912 SIN3AQ96ST3 1273 aa8.07□□□□□ -1.12
NEK3-211ENST00000629912 RRP7BPQ9NSQ0 103 aa8.07□□□□□ -1.12
NEK3-211ENST00000629912 CHIC2Q9UKJ5 165 aa8.07□□□□□ -1.12
NEK3-211ENST00000629912 UHRF1BP1LA0JNW5 1464 aa8.06□□□□□ -1.12
NEK3-211ENST00000629912 CDC42BPAQ5VT25 1732 aa8.06□□□□□ -1.12
NEK3-211ENST00000629912 ZNF644Q9H582 1327 aaPredicted RBP8.06□□□□□ -1.12
NEK3-211ENST00000629912 PPP1R15AO75807 674 aaPredicted RBP8.06□□□□□ -1.12
NEK3-211ENST00000629912 ABCC2Q92887 1545 aa8.05□□□□□ -1.12
NEK3-211ENST00000629912 RSPH4AQ5TD94 716 aa8.05□□□□□ -1.12
NEK3-211ENST00000629912 CAMSAP2Q08AD1 1489 aa8.05□□□□□ -1.12
NEK3-211ENST00000629912 NEUROD1Q13562 356 aa8.04□□□□□ -1.12
NEK3-211ENST00000629912 MPHOSPH9Q99550 1183 aa8.04□□□□□ -1.12
NEK3-211ENST00000629912 ADGRL2O95490 1459 aa8.04□□□□□ -1.12
NEK3-211ENST00000629912 ERCC6L2Q5T890 1561 aa8.04□□□□□ -1.12
NEK3-211ENST00000629912 NCOA1Q15788 1441 aa8.03□□□□□ -1.12
NEK3-211ENST00000629912 ADGBQ8N7X0 1667 aa8.03□□□□□ -1.12
NEK3-211ENST00000629912 KDM6BO15054 1643 aa8.03□□□□□ -1.12
NEK3-211ENST00000629912 TRIM52Q96A61 297 aa8.02□□□□□ -1.13
NEK3-211ENST00000629912 KDM5BQ9UGL1 1544 aa8.02□□□□□ -1.13
NEK3-211ENST00000629912 CROCC2H7BZ55 1655 aa8.02□□□□□ -1.13
NEK3-211ENST00000629912 ARHGEF5Q12774 1597 aa8.01□□□□□ -1.13
NEK3-211ENST00000629912 SHANK2Q9UPX8 1470 aa8.01□□□□□ -1.13
NEK3-211ENST00000629912 CDC42BPBQ9Y5S2 1711 aa8.01□□□□□ -1.13
NEK3-211ENST00000629912 ANKRD30AQ9BXX3 1397 aa8.01□□□□□ -1.13
NEK3-211ENST00000629912 ZNF777Q9ULD5 760 aaPredicted RBP8.01□□□□□ -1.13
NEK3-211ENST00000629912 DENND4BO75064 1496 aaPredicted RBP8□□□□□ -1.13
NEK3-211ENST00000629912 TSPY4P0CV99 314 aa8□□□□□ -1.13
NEK3-211ENST00000629912 TSPY10P0CW01 314 aa8□□□□□ -1.13
NEK3-211ENST00000629912 MBD5Q9P267 1494 aa8□□□□□ -1.13
NEK3-211ENST00000629912 PREX2Q70Z35 1606 aa8□□□□□ -1.13
NEK3-211ENST00000629912 OSCARQ8IYS5 282 aa7.99□□□□□ -1.13
NEK3-211ENST00000629912 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.98□□□□□ -1.13
NEK3-211ENST00000629912 TONSLQ96HA7 1378 aa7.98□□□□□ -1.13
NEK3-211ENST00000629912 ANKRD30BQ9BXX2 1392 aa7.98□□□□□ -1.13
NEK3-211ENST00000629912 KIAA1107Q9UPP5 1409 aa7.98□□□□□ -1.13
NEK3-211ENST00000629912 HNRNPMP52272 730 aaKnown RBP eCLIP7.98□□□□□ -1.13
NEK3-211ENST00000629912 ZCCHC11Q5TAX3 1644 aaKnown RBP7.98□□□□□ -1.13
NEK3-211ENST00000629912 PLEKHH2Q8IVE3 1493 aa7.98□□□□□ -1.13
NEK3-211ENST00000629912 C9orf84Q5VXU9 1444 aa7.97□□□□□ -1.13
NEK3-211ENST00000629912 MYO5CQ9NQX4 1742 aa7.97□□□□□ -1.13
NEK3-211ENST00000629912 SAMD9LQ8IVG5 1584 aa7.97□□□□□ -1.13
NEK3-211ENST00000629912 PLCH2O75038 1416 aa7.96□□□□□ -1.13
NEK3-211ENST00000629912 ANKRD50Q9ULJ7 1429 aa7.96□□□□□ -1.13
NEK3-211ENST00000629912 PZPP20742 1482 aa7.96□□□□□ -1.13
NEK3-211ENST00000629912 EFCAB2Q5VUJ9 269 aa7.96□□□□□ -1.14
NEK3-211ENST00000629912 MIER1Q8N108 512 aa7.96□□□□□ -1.14
NEK3-211ENST00000629912 SLC4A1APQ9BWU0 796 aaKnown RBP7.96□□□□□ -1.14
NEK3-211ENST00000629912 MAST1Q9Y2H9 1570 aa7.96□□□□□ -1.14
NEK3-211ENST00000629912 CCDC141Q6ZP82 1450 aa7.95□□□□□ -1.14
NEK3-211ENST00000629912 KCNH8Q96L42 1107 aa7.95□□□□□ -1.14
NEK3-211ENST00000629912 TTC37Q6PGP7 1564 aa7.95□□□□□ -1.14
NEK3-211ENST00000629912 ARHGAP5Q13017 1502 aa7.94□□□□□ -1.14
NEK3-211ENST00000629912 ARAP3Q8WWN8 1544 aa7.94□□□□□ -1.14
NEK3-211ENST00000629912 RPRD2Q5VT52 1461 aaKnown RBP7.94□□□□□ -1.14
NEK3-211ENST00000629912 KDM5DQ9BY66 1539 aa7.93□□□□□ -1.14
NEK3-211ENST00000629912 L3MBTL2Q969R5 705 aa7.92□□□□□ -1.14
NEK3-211ENST00000629912 KIF15Q9NS87 1388 aa7.92□□□□□ -1.14
NEK3-211ENST00000629912 PKD2Q13563 968 aa7.91□□□□□ -1.14
NEK3-211ENST00000629912 FOXD1Q16676 465 aa7.91□□□□□ -1.14
NEK3-211ENST00000629912 NUP155O75694 1391 aa7.91□□□□□ -1.14
NEK3-211ENST00000629912 WDR7Q9Y4E6 1490 aa7.91□□□□□ -1.14
NEK3-211ENST00000629912 PLXNC1O60486 1568 aa7.9□□□□□ -1.14
NEK3-211ENST00000629912 SYCP2Q9BX26 1530 aa7.9□□□□□ -1.14
NEK3-211ENST00000629912 ARHGEF12Q9NZN5 1544 aa7.9□□□□□ -1.14
NEK3-211ENST00000629912 RTEL1-TNFRSF6BF6WH68 1400 aa7.9□□□□□ -1.14
NEK3-211ENST00000629912 ABCA9Q8IUA7 1624 aa7.89□□□□□ -1.15
NEK3-211ENST00000629912 NPM1P06748 294 aaKnown RBP eCLIP7.89□□□□□ -1.15
NEK3-211ENST00000629912 CENPBP07199 599 aaPredicted RBP7.89□□□□□ -1.15
NEK3-211ENST00000629912 DUOX2Q9NRD8 1548 aa7.88□□□□□ -1.15
NEK3-211ENST00000629912 ABCC1P33527 1531 aa7.88□□□□□ -1.15
NEK3-211ENST00000629912 TEX14Q8IWB6 1497 aa7.87□□□□□ -1.15
NEK3-211ENST00000629912 ASXL2Q76L83 1435 aa7.87□□□□□ -1.15
NEK3-211ENST00000629912 UNC13BO14795 1591 aa7.87□□□□□ -1.15
NEK3-211ENST00000629912 ERBINQ96RT1 1412 aa7.86□□□□□ -1.15
NEK3-211ENST00000629912 TRAPPC8Q9Y2L5 1435 aa7.86□□□□□ -1.15
NEK3-211ENST00000629912 EIF4G2P78344 907 aaKnown RBP eCLIP7.86□□□□□ -1.15
NEK3-211ENST00000629912 DDX10Q13206 875 aaKnown RBP7.86□□□□□ -1.15
NEK3-211ENST00000629912 NBPF8Q3BBV2 869 aa7.86□□□□□ -1.15
NEK3-211ENST00000629912 SPAG9O60271 1321 aaKnown RBP7.85□□□□□ -1.15
NEK3-211ENST00000629912 FAM135AQ9P2D6 1515 aa7.85□□□□□ -1.15
NEK3-211ENST00000629912 HSPA5P11021 654 aaKnown RBP7.85□□□□□ -1.15
NEK3-211ENST00000629912 UHRF1BP1Q6BDS2 1440 aa7.85□□□□□ -1.15
NEK3-211ENST00000629912 IQGAP3Q86VI3 1631 aa7.85□□□□□ -1.15
NEK3-211ENST00000629912 FANCAO15360 1455 aa7.84□□□□□ -1.15
NEK3-211ENST00000629912 ATP10AO60312 1499 aa7.84□□□□□ -1.15
NEK3-211ENST00000629912 MAGI2Q86UL8 1455 aa7.84□□□□□ -1.15
NEK3-211ENST00000629912 AFAP1Q8N556 730 aa7.83□□□□□ -1.16
NEK3-211ENST00000629912 HIRIP3Q9BW71 556 aaPredicted RBP7.83□□□□□ -1.16
NEK3-211ENST00000629912 SPATA31E1Q6ZUB1 1445 aa7.83□□□□□ -1.16
NEK3-211ENST00000629912 CCER2I3L3R5 266 aa7.82□□□□□ -1.16
NEK3-211ENST00000629912 SCAPERQ9BY12 1400 aa7.82□□□□□ -1.16
NEK3-211ENST00000629912 DHX29Q7Z478 1369 aaKnown RBP7.81□□□□□ -1.16
NEK3-211ENST00000629912 ADGRL1O94910 1474 aa7.81□□□□□ -1.16
NEK3-211ENST00000629912 PLA2R1Q13018 1463 aa7.81□□□□□ -1.16
NEK3-211ENST00000629912 WASHC2AQ641Q2 1341 aa7.8□□□□□ -1.16
NEK3-211ENST00000629912 CFAP74Q9C0B2 1584 aa7.8□□□□□ -1.16
NEK3-211ENST00000629912 INO80Q9ULG1 1556 aaPredicted RBP7.8□□□□□ -1.16
NEK3-211ENST00000629912 CD109Q6YHK3 1445 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms