RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 CDC42BPAQ5VT25 1732 aa23.83■■□□□ 1.4
LDB3-208ENST00000623007 ABCC5O15440 1437 aa23.81■■□□□ 1.4
LDB3-208ENST00000623007 ZNF316A6NFI3 1004 aaPredicted RBP23.8■■□□□ 1.4
LDB3-208ENST00000623007 ADGBQ8N7X0 1667 aa23.8■■□□□ 1.4
LDB3-208ENST00000623007 ERCC6L2Q5T890 1561 aa23.79■■□□□ 1.4
LDB3-208ENST00000623007 SHANK2Q9UPX8 1470 aa23.79■■□□□ 1.4
LDB3-208ENST00000623007 RSPH4AQ5TD94 716 aa23.78■■□□□ 1.4
LDB3-208ENST00000623007 CROCC2H7BZ55 1655 aa23.78■■□□□ 1.4
LDB3-208ENST00000623007 KDM5BQ9UGL1 1544 aa23.78■■□□□ 1.4
LDB3-208ENST00000623007 ADGRL2O95490 1459 aa23.77■■□□□ 1.4
LDB3-208ENST00000623007 PREX2Q70Z35 1606 aa23.75■■□□□ 1.39
LDB3-208ENST00000623007 ARHGEF5Q12774 1597 aa23.74■■□□□ 1.39
LDB3-208ENST00000623007 OSCARQ8IYS5 282 aa23.72■■□□□ 1.39
LDB3-208ENST00000623007 PLEKHH2Q8IVE3 1493 aa23.71■■□□□ 1.39
LDB3-208ENST00000623007 ZCCHC11Q5TAX3 1644 aaKnown RBP23.71■■□□□ 1.39
LDB3-208ENST00000623007 ANKRD30AQ9BXX3 1397 aa23.71■■□□□ 1.39
LDB3-208ENST00000623007 RRP7BPQ9NSQ0 103 aa23.7■■□□□ 1.38
LDB3-208ENST00000623007 CHIC2Q9UKJ5 165 aa23.69■■□□□ 1.38
LDB3-208ENST00000623007 NCOA1Q15788 1441 aa23.67■■□□□ 1.38
LDB3-208ENST00000623007 ZNF644Q9H582 1327 aaPredicted RBP23.67■■□□□ 1.38
LDB3-208ENST00000623007 MYO5CQ9NQX4 1742 aa23.67■■□□□ 1.38
LDB3-208ENST00000623007 CDC42BPBQ9Y5S2 1711 aa23.65■■□□□ 1.38
LDB3-208ENST00000623007 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.65■■□□□ 1.38
LDB3-208ENST00000623007 ZNF777Q9ULD5 760 aaPredicted RBP23.64■■□□□ 1.38
LDB3-208ENST00000623007 TSPY4P0CV99 314 aa23.64■■□□□ 1.37
LDB3-208ENST00000623007 TSPY10P0CW01 314 aa23.64■■□□□ 1.37
LDB3-208ENST00000623007 ARAP3Q8WWN8 1544 aa23.63■■□□□ 1.37
LDB3-208ENST00000623007 KIAA1107Q9UPP5 1409 aa23.63■■□□□ 1.37
LDB3-208ENST00000623007 DIEXFQ68CQ4 756 aaKnown RBP23.62■■□□□ 1.37
LDB3-208ENST00000623007 CCDC141Q6ZP82 1450 aa23.61■■□□□ 1.37
LDB3-208ENST00000623007 C9orf84Q5VXU9 1444 aa23.6■■□□□ 1.37
LDB3-208ENST00000623007 ARHGAP5Q13017 1502 aa23.6■■□□□ 1.37
LDB3-208ENST00000623007 TTC37Q6PGP7 1564 aa23.59■■□□□ 1.37
LDB3-208ENST00000623007 TRIM52Q96A61 297 aa23.59■■□□□ 1.37
LDB3-208ENST00000623007 SAMD9LQ8IVG5 1584 aa23.59■■□□□ 1.37
LDB3-208ENST00000623007 MAST1Q9Y2H9 1570 aa23.58■■□□□ 1.36
LDB3-208ENST00000623007 MBD5Q9P267 1494 aa23.58■■□□□ 1.36
LDB3-208ENST00000623007 PLCH2O75038 1416 aa23.57■■□□□ 1.36
LDB3-208ENST00000623007 TONSLQ96HA7 1378 aa23.57■■□□□ 1.36
LDB3-208ENST00000623007 KDM6BO15054 1643 aa23.55■■□□□ 1.36
LDB3-208ENST00000623007 MPHOSPH9Q99550 1183 aa23.54■■□□□ 1.36
LDB3-208ENST00000623007 WDR7Q9Y4E6 1490 aa23.54■■□□□ 1.36
LDB3-208ENST00000623007 ANKRD50Q9ULJ7 1429 aa23.53■■□□□ 1.36
LDB3-208ENST00000623007 NEUROD1Q13562 356 aa23.52■■□□□ 1.36
LDB3-208ENST00000623007 EFCAB2Q5VUJ9 269 aa23.51■■□□□ 1.35
LDB3-208ENST00000623007 SIN3AQ96ST3 1273 aa23.51■■□□□ 1.35
LDB3-208ENST00000623007 PPP1R15AO75807 674 aaPredicted RBP23.48■■□□□ 1.35
LDB3-208ENST00000623007 PLXNC1O60486 1568 aa23.47■■□□□ 1.35
LDB3-208ENST00000623007 KDM5DQ9BY66 1539 aa23.47■■□□□ 1.35
LDB3-208ENST00000623007 SYCP2Q9BX26 1530 aa23.46■■□□□ 1.35
LDB3-208ENST00000623007 NPM1P06748 294 aaKnown RBP eCLIP23.46■■□□□ 1.35
LDB3-208ENST00000623007 KIF15Q9NS87 1388 aa23.45■■□□□ 1.35
LDB3-208ENST00000623007 ABCA9Q8IUA7 1624 aa23.45■■□□□ 1.35
LDB3-208ENST00000623007 DENND4BO75064 1496 aaPredicted RBP23.45■■□□□ 1.34
LDB3-208ENST00000623007 KCNH8Q96L42 1107 aa23.44■■□□□ 1.34
LDB3-208ENST00000623007 HNRNPMP52272 730 aaKnown RBP eCLIP23.44■■□□□ 1.34
LDB3-208ENST00000623007 SLC4A1APQ9BWU0 796 aaKnown RBP23.44■■□□□ 1.34
LDB3-208ENST00000623007 ABCC1P33527 1531 aa23.42■■□□□ 1.34
LDB3-208ENST00000623007 ANKRD30BQ9BXX2 1392 aa23.41■■□□□ 1.34
LDB3-208ENST00000623007 PZPP20742 1482 aa23.4■■□□□ 1.34
LDB3-208ENST00000623007 RPRD2Q5VT52 1461 aaKnown RBP23.38■■□□□ 1.33
LDB3-208ENST00000623007 ASXL2Q76L83 1435 aa23.38■■□□□ 1.33
LDB3-208ENST00000623007 RTEL1-TNFRSF6BF6WH68 1400 aa23.37■■□□□ 1.33
LDB3-208ENST00000623007 DUOX2Q9NRD8 1548 aa23.37■■□□□ 1.33
LDB3-208ENST00000623007 ERBINQ96RT1 1412 aa23.34■■□□□ 1.33
LDB3-208ENST00000623007 CFAP74Q9C0B2 1584 aa23.33■■□□□ 1.33
LDB3-208ENST00000623007 NUP155O75694 1391 aa23.32■■□□□ 1.32
LDB3-208ENST00000623007 UNC13BO14795 1591 aa23.31■■□□□ 1.32
LDB3-208ENST00000623007 FANCAO15360 1455 aa23.31■■□□□ 1.32
LDB3-208ENST00000623007 ARHGEF12Q9NZN5 1544 aa23.28■■□□□ 1.32
LDB3-208ENST00000623007 PKD2Q13563 968 aa23.24■■□□□ 1.31
LDB3-208ENST00000623007 FAM135AQ9P2D6 1515 aa23.24■■□□□ 1.31
LDB3-208ENST00000623007 RIMBP3CA6NJZ7 1639 aa23.23■■□□□ 1.31
LDB3-208ENST00000623007 RIMBP3BA6NNM3 1639 aa23.23■■□□□ 1.31
LDB3-208ENST00000623007 RIMBP3Q9UFD9 1639 aa23.23■■□□□ 1.31
LDB3-208ENST00000623007 MAGI2Q86UL8 1455 aa23.23■■□□□ 1.31
LDB3-208ENST00000623007 SPAG9O60271 1321 aaKnown RBP23.23■■□□□ 1.31
LDB3-208ENST00000623007 IQGAP3Q86VI3 1631 aa23.22■■□□□ 1.31
LDB3-208ENST00000623007 TEX14Q8IWB6 1497 aa23.22■■□□□ 1.31
LDB3-208ENST00000623007 ADGRL1O94910 1474 aa23.21■■□□□ 1.31
LDB3-208ENST00000623007 TRAPPC8Q9Y2L5 1435 aa23.21■■□□□ 1.31
LDB3-208ENST00000623007 ZFYVE16Q7Z3T8 1539 aa23.21■■□□□ 1.31
LDB3-208ENST00000623007 INO80Q9ULG1 1556 aaPredicted RBP23.19■■□□□ 1.3
LDB3-208ENST00000623007 L3MBTL2Q969R5 705 aa23.18■■□□□ 1.3
LDB3-208ENST00000623007 ATP7AQ04656 1500 aa23.17■■□□□ 1.3
LDB3-208ENST00000623007 FOXD1Q16676 465 aa23.16■■□□□ 1.3
LDB3-208ENST00000623007 ZNF518AQ6AHZ1 1483 aa23.15■■□□□ 1.3
LDB3-208ENST00000623007 CD109Q6YHK3 1445 aa23.15■■□□□ 1.3
LDB3-208ENST00000623007 SCAPERQ9BY12 1400 aa23.15■■□□□ 1.3
LDB3-208ENST00000623007 EIF2AK4Q9P2K8 1649 aaKnown RBP23.15■■□□□ 1.3
LDB3-208ENST00000623007 NEO1Q92859 1461 aa23.13■■□□□ 1.29
LDB3-208ENST00000623007 ATP10AO60312 1499 aa23.11■■□□□ 1.29
LDB3-208ENST00000623007 DEPDC5O75140 1603 aa23.1■■□□□ 1.29
LDB3-208ENST00000623007 GLI2P10070 1586 aa23.09■■□□□ 1.29
LDB3-208ENST00000623007 EIF4G2P78344 907 aaKnown RBP eCLIP23.09■■□□□ 1.29
LDB3-208ENST00000623007 CENPBP07199 599 aaPredicted RBP23.07■■□□□ 1.28
LDB3-208ENST00000623007 MIER1Q8N108 512 aa23.07■■□□□ 1.28
LDB3-208ENST00000623007 AFAP1Q8N556 730 aa23.07■■□□□ 1.28
LDB3-208ENST00000623007 CCDC144AA2RUR9 1427 aa23.07■■□□□ 1.28
LDB3-208ENST00000623007 UHRF1BP1Q6BDS2 1440 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms