RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 WDR43Q15061 677 aaKnown RBP eCLIP18.69■□□□□ 0.58
CIITA-213ENST00000618327 NCOA2Q15596 1464 aa18.67■□□□□ 0.58
CIITA-213ENST00000618327 SLC24A1O60721 1099 aa18.67■□□□□ 0.58
CIITA-213ENST00000618327 ZNF644Q9H582 1327 aaPredicted RBP18.66■□□□□ 0.58
CIITA-213ENST00000618327 KIAA0586Q9BVV6 1533 aa18.64■□□□□ 0.57
CIITA-213ENST00000618327 CUL7Q14999 1698 aa18.64■□□□□ 0.57
CIITA-213ENST00000618327 HSPA5P11021 654 aaKnown RBP18.64■□□□□ 0.57
CIITA-213ENST00000618327 KNSTRNQ9Y448 316 aa18.64■□□□□ 0.57
CIITA-213ENST00000618327 L3MBTL2Q969R5 705 aa18.63■□□□□ 0.57
CIITA-213ENST00000618327 FKBP8Q14318 412 aa18.63■□□□□ 0.57
CIITA-213ENST00000618327 SYNJ2O15056 1496 aa18.6■□□□□ 0.57
CIITA-213ENST00000618327 RRBP1Q9P2E9 1410 aaKnown RBP18.59■□□□□ 0.57
CIITA-213ENST00000618327 POGKQ9P215 609 aa18.59■□□□□ 0.57
CIITA-213ENST00000618327 TMF1P82094 1093 aa18.58■□□□□ 0.57
CIITA-213ENST00000618327 IQGAP2Q13576 1575 aa18.57■□□□□ 0.56
CIITA-213ENST00000618327 ZNF608Q9ULD9 1512 aaPredicted RBP18.57■□□□□ 0.56
CIITA-213ENST00000618327 TIAM1Q13009 1591 aa18.56■□□□□ 0.56
CIITA-213ENST00000618327 MAGI1Q96QZ7 1491 aaPredicted RBP18.55■□□□□ 0.56
CIITA-213ENST00000618327 WASHC2CQ9Y4E1 1318 aa18.54■□□□□ 0.56
CIITA-213ENST00000618327 GRIN2AQ12879 1464 aa18.53■□□□□ 0.56
CIITA-213ENST00000618327 EHBP1L1Q8N3D4 1523 aa18.53■□□□□ 0.56
CIITA-213ENST00000618327 ROCK2O75116 1388 aaKnown RBP18.52■□□□□ 0.56
CIITA-213ENST00000618327 HDGFP51858 240 aaKnown RBP18.52■□□□□ 0.56
CIITA-213ENST00000618327 ZBTB47Q9UFB7 747 aaPredicted RBP18.52■□□□□ 0.56
CIITA-213ENST00000618327 HECW1Q76N89 1606 aa18.52■□□□□ 0.56
CIITA-213ENST00000618327 C14orf37Q86TY3 774 aa18.51■□□□□ 0.55
CIITA-213ENST00000618327 TROQ12816 1431 aaPredicted RBP18.5■□□□□ 0.55
CIITA-213ENST00000618327 KIF15Q9NS87 1388 aa18.49■□□□□ 0.55
CIITA-213ENST00000618327 CCDC144AA2RUR9 1427 aa18.48■□□□□ 0.55
CIITA-213ENST00000618327 UACAQ9BZF9 1416 aa18.47■□□□□ 0.55
CIITA-213ENST00000618327 CFAP53Q96M91 514 aa18.47■□□□□ 0.55
CIITA-213ENST00000618327 CC2D1BQ5T0F9 858 aaKnown RBP18.47■□□□□ 0.55
CIITA-213ENST00000618327 EPRSP07814 1512 aaKnown RBP18.46■□□□□ 0.55
CIITA-213ENST00000618327 MIA2Q96PC5 1412 aa18.46■□□□□ 0.55
CIITA-213ENST00000618327 PCF11O94913 1555 aaKnown RBP18.45■□□□□ 0.54
CIITA-213ENST00000618327 ANKRD50Q9ULJ7 1429 aa18.45■□□□□ 0.54
CIITA-213ENST00000618327 FAM69CQ0P6D2 419 aa18.44■□□□□ 0.54
CIITA-213ENST00000618327 ARHGAP5Q13017 1502 aa18.44■□□□□ 0.54
CIITA-213ENST00000618327 CDK13Q14004 1512 aaKnown RBP18.43■□□□□ 0.54
CIITA-213ENST00000618327 SAFB2Q14151 953 aaKnown RBP eCLIP18.43■□□□□ 0.54
CIITA-213ENST00000618327 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.42■□□□□ 0.54
CIITA-213ENST00000618327 SENP3-EIF4A1A0A087X0R7 540 aa18.42■□□□□ 0.54
CIITA-213ENST00000618327 STK26Q9P289 416 aa18.42■□□□□ 0.54
CIITA-213ENST00000618327 CCER2I3L3R5 266 aa18.41■□□□□ 0.54
CIITA-213ENST00000618327 BCL11AQ9H165 835 aa18.41■□□□□ 0.54
CIITA-213ENST00000618327 SRPK2P78362 688 aaKnown RBP18.4■□□□□ 0.54
CIITA-213ENST00000618327 AFAP1Q8N556 730 aa18.4■□□□□ 0.54
CIITA-213ENST00000618327 SCAF1Q9H7N4 1312 aaKnown RBP18.39■□□□□ 0.53
CIITA-213ENST00000618327 PPM1GO15355 546 aaPredicted RBP18.39■□□□□ 0.53
CIITA-213ENST00000618327 SUPT6HQ7KZ85 1726 aaKnown RBP18.38■□□□□ 0.53
CIITA-213ENST00000618327 TNNT2P45379 298 aaPredicted RBP18.38■□□□□ 0.53
CIITA-213ENST00000618327 PLB1Q6P1J6 1458 aa18.38■□□□□ 0.53
CIITA-213ENST00000618327 ANP32AP39687 249 aaKnown RBP18.37■□□□□ 0.53
CIITA-213ENST00000618327 MAP3K1Q13233 1512 aa18.37■□□□□ 0.53
CIITA-213ENST00000618327 PLEKHG5O94827 1062 aa18.37■□□□□ 0.53
CIITA-213ENST00000618327 IRX6P78412 446 aaPredicted RBP18.37■□□□□ 0.53
CIITA-213ENST00000618327 EIF5BO60841 1220 aaKnown RBP18.36■□□□□ 0.53
CIITA-213ENST00000618327 CCDC136Q96JN2 1154 aa18.36■□□□□ 0.53
CIITA-213ENST00000618327 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.35■□□□□ 0.53
CIITA-213ENST00000618327 EIF3AQ14152 1382 aaKnown RBP18.35■□□□□ 0.53
CIITA-213ENST00000618327 ZBTB7CA1YPR0 619 aa18.35■□□□□ 0.53
CIITA-213ENST00000618327 NUTM2DQ5VT03 806 aaPredicted RBP18.34■□□□□ 0.53
CIITA-213ENST00000618327 HFM1A2PYH4 1435 aa18.33■□□□□ 0.52
CIITA-213ENST00000618327 NUDCQ9Y266 331 aa18.32■□□□□ 0.52
CIITA-213ENST00000618327 C9orf84Q5VXU9 1444 aa18.32■□□□□ 0.52
CIITA-213ENST00000618327 KIF21AQ7Z4S6 1674 aa18.31■□□□□ 0.52
CIITA-213ENST00000618327 ST20-MTHFSA0A0A6YYL1 179 aa18.31■□□□□ 0.52
CIITA-213ENST00000618327 KTN1Q86UP2 1357 aaKnown RBP18.31■□□□□ 0.52
CIITA-213ENST00000618327 PLEKHH2Q8IVE3 1493 aa18.31■□□□□ 0.52
CIITA-213ENST00000618327 DAPK1P53355 1430 aa18.29■□□□□ 0.52
CIITA-213ENST00000618327 MORC1Q86VD1 984 aa18.29■□□□□ 0.52
CIITA-213ENST00000618327 NEUROD2Q15784 382 aa18.28■□□□□ 0.52
CIITA-213ENST00000618327 SUPT16HQ9Y5B9 1047 aaKnown RBP18.27■□□□□ 0.52
CIITA-213ENST00000618327 MAPK8IP3Q9UPT6 1336 aa18.26■□□□□ 0.51
CIITA-213ENST00000618327 RALBP1Q15311 655 aa18.26■□□□□ 0.51
CIITA-213ENST00000618327 USP47Q96K76 1375 aa18.25■□□□□ 0.51
CIITA-213ENST00000618327 VGFO15240 615 aaPredicted RBP18.25■□□□□ 0.51
CIITA-213ENST00000618327 ARHGEF11O15085 1522 aa18.25■□□□□ 0.51
CIITA-213ENST00000618327 TRAK1Q9UPV9 953 aa18.25■□□□□ 0.51
CIITA-213ENST00000618327 HDGFL2Q7Z4V5 671 aaPredicted RBP18.24■□□□□ 0.51
CIITA-213ENST00000618327 U2SURPO15042 1029 aaKnown RBP18.24■□□□□ 0.51
CIITA-213ENST00000618327 EID1Q9Y6B2 187 aa18.23■□□□□ 0.51
CIITA-213ENST00000618327 LMOD2Q6P5Q4 547 aa18.23■□□□□ 0.51
CIITA-213ENST00000618327 NAIPQ13075 1403 aa18.21■□□□□ 0.51
CIITA-213ENST00000618327 SCAPERQ9BY12 1400 aa18.21■□□□□ 0.51
CIITA-213ENST00000618327 NPM2Q86SE8 214 aaKnown RBP18.21■□□□□ 0.51
CIITA-213ENST00000618327 ADAMTS12P58397 1594 aa18.2■□□□□ 0.5
CIITA-213ENST00000618327 WDR62O43379 1518 aa18.2■□□□□ 0.5
CIITA-213ENST00000618327 ROCK1Q13464 1354 aa18.2■□□□□ 0.5
CIITA-213ENST00000618327 STAC3Q96MF2 364 aa18.18■□□□□ 0.5
CIITA-213ENST00000618327 HAP1P54257 671 aaPredicted RBP18.18■□□□□ 0.5
CIITA-213ENST00000618327 PTPN23Q9H3S7 1636 aa18.18■□□□□ 0.5
CIITA-213ENST00000618327 KIAA1107Q9UPP5 1409 aa18.17■□□□□ 0.5
CIITA-213ENST00000618327 CAMSAP2Q08AD1 1489 aa18.16■□□□□ 0.5
CIITA-213ENST00000618327 CTTNBP2Q8WZ74 1663 aa18.16■□□□□ 0.5
CIITA-213ENST00000618327 KIF14Q15058 1648 aa18.16■□□□□ 0.5
CIITA-213ENST00000618327 PNNQ9H307 717 aaKnown RBP18.16■□□□□ 0.5
CIITA-213ENST00000618327 TERF2IPQ9NYB0 399 aa18.15■□□□□ 0.5
CIITA-213ENST00000618327 ABCC5O15440 1437 aa18.15■□□□□ 0.5
CIITA-213ENST00000618327 SOX12O15370 315 aa18.14■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 94.5 ms