RNA–Protein interactions for RNA: ENST00000613856.4

SLIRP-212, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SLIRP, Length 420 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-212ENST00000613856 ZMYM4Q5VZL5 1548 aa18.02■□□□□ 0.47
SLIRP-212ENST00000613856 FYCO1Q9BQS8 1478 aa18.01■□□□□ 0.47
SLIRP-212ENST00000613856 ZFYVE16Q7Z3T8 1539 aa18■□□□□ 0.47
SLIRP-212ENST00000613856 MLECQ14165 292 aa18■□□□□ 0.47
SLIRP-212ENST00000613856 HECW1Q76N89 1606 aa17.99■□□□□ 0.47
SLIRP-212ENST00000613856 CERKQ8TCT0 537 aa17.99■□□□□ 0.47
SLIRP-212ENST00000613856 CASKIN1Q8WXD9 1431 aa17.98■□□□□ 0.47
SLIRP-212ENST00000613856 ILDR2Q71H61 639 aa17.98■□□□□ 0.47
SLIRP-212ENST00000613856 CFAP74Q9C0B2 1584 aa17.98■□□□□ 0.47
SLIRP-212ENST00000613856 CDK13Q14004 1512 aaKnown RBP17.95■□□□□ 0.46
SLIRP-212ENST00000613856 STRCQ7RTU9 1775 aa17.94■□□□□ 0.46
SLIRP-212ENST00000613856 MAP3K1Q13233 1512 aa17.94■□□□□ 0.46
SLIRP-212ENST00000613856 POGZQ7Z3K3 1410 aa17.92■□□□□ 0.46
SLIRP-212ENST00000613856 PREX1Q8TCU6 1659 aa17.92■□□□□ 0.46
SLIRP-212ENST00000613856 ARHGEF12Q9NZN5 1544 aa17.92■□□□□ 0.46
SLIRP-212ENST00000613856 LRRIQ1Q96JM4 1722 aa17.92■□□□□ 0.46
SLIRP-212ENST00000613856 PLEKHD1A6NEE1 506 aa17.91■□□□□ 0.46
SLIRP-212ENST00000613856 CEBPAP49715 358 aaPredicted RBP17.91■□□□□ 0.46
SLIRP-212ENST00000613856 TIAM1Q13009 1591 aa17.9■□□□□ 0.46
SLIRP-212ENST00000613856 SCAPERQ9BY12 1400 aa17.89■□□□□ 0.45
SLIRP-212ENST00000613856 DISP3Q9P2K9 1392 aa17.88■□□□□ 0.45
SLIRP-212ENST00000613856 CCDC18Q5T9S5 1454 aa17.88■□□□□ 0.45
SLIRP-212ENST00000613856 MAGI2Q86UL8 1455 aa17.87■□□□□ 0.45
SLIRP-212ENST00000613856 MYO5CQ9NQX4 1742 aa17.84■□□□□ 0.45
SLIRP-212ENST00000613856 KIF14Q15058 1648 aa17.83■□□□□ 0.45
SLIRP-212ENST00000613856 ATP10AO60312 1499 aa17.83■□□□□ 0.45
SLIRP-212ENST00000613856 PLCH2O75038 1416 aa17.83■□□□□ 0.45
SLIRP-212ENST00000613856 C9orf84Q5VXU9 1444 aa17.83■□□□□ 0.45
SLIRP-212ENST00000613856 APLP2Q06481 763 aa17.81■□□□□ 0.44
SLIRP-212ENST00000613856 C3P01024 1663 aa17.8■□□□□ 0.44
SLIRP-212ENST00000613856 SPATA31D1Q6ZQQ2 1576 aa17.79■□□□□ 0.44
SLIRP-212ENST00000613856 SOCS7O14512 581 aa17.78■□□□□ 0.44
SLIRP-212ENST00000613856 DIP2CQ9Y2E4 1556 aa17.78■□□□□ 0.44
SLIRP-212ENST00000613856 LRRC9Q6ZRR7 1453 aa17.77■□□□□ 0.44
SLIRP-212ENST00000613856 ABCA6Q8N139 1617 aa17.76■□□□□ 0.43
SLIRP-212ENST00000613856 KDM5CP41229 1560 aa17.76■□□□□ 0.43
SLIRP-212ENST00000613856 EHBP1L1Q8N3D4 1523 aa17.76■□□□□ 0.43
SLIRP-212ENST00000613856 UHRF1BP1Q6BDS2 1440 aa17.75■□□□□ 0.43
SLIRP-212ENST00000613856 AFAP1Q8N556 730 aa17.75■□□□□ 0.43
SLIRP-212ENST00000613856 LTBP4Q8N2S1 1624 aa17.74■□□□□ 0.43
SLIRP-212ENST00000613856 SETD1BQ9UPS6 1966 aaKnown RBP17.73■□□□□ 0.43
SLIRP-212ENST00000613856 ATP1B4Q9UN42 357 aaPredicted RBP17.73■□□□□ 0.43
SLIRP-212ENST00000613856 CDC42BPBQ9Y5S2 1711 aa17.72■□□□□ 0.43
SLIRP-212ENST00000613856 ZNF518AQ6AHZ1 1483 aa17.72■□□□□ 0.43
SLIRP-212ENST00000613856 ARHGAP5Q13017 1502 aa17.72■□□□□ 0.43
SLIRP-212ENST00000613856 EFCAB2Q5VUJ9 269 aa17.7■□□□□ 0.42
SLIRP-212ENST00000613856 SUPT6HQ7KZ85 1726 aaKnown RBP17.69■□□□□ 0.42
SLIRP-212ENST00000613856 KANK4Q5T7N3 995 aaPredicted RBP17.69■□□□□ 0.42
SLIRP-212ENST00000613856 REREQ9P2R6 1566 aa17.68■□□□□ 0.42
SLIRP-212ENST00000613856 MTUS2Q5JR59 1369 aa17.67■□□□□ 0.42
SLIRP-212ENST00000613856 PTPRTO14522 1441 aa17.67■□□□□ 0.42
SLIRP-212ENST00000613856 TRAPPC8Q9Y2L5 1435 aa17.66■□□□□ 0.42
SLIRP-212ENST00000613856 DMRT2Q9Y5R5 561 aa17.66■□□□□ 0.42
SLIRP-212ENST00000613856 ITSN2Q9NZM3 1697 aa17.65■□□□□ 0.42
SLIRP-212ENST00000613856 MYT1LQ9UL68 1186 aa17.65■□□□□ 0.42
SLIRP-212ENST00000613856 KIDINS220Q9ULH0 1771 aa17.65■□□□□ 0.42
SLIRP-212ENST00000613856 TROQ12816 1431 aaPredicted RBP17.64■□□□□ 0.42
SLIRP-212ENST00000613856 PPARGC1BQ86YN6 1023 aaKnown RBP17.64■□□□□ 0.41
SLIRP-212ENST00000613856 NCOA1Q15788 1441 aa17.64■□□□□ 0.41
SLIRP-212ENST00000613856 ABCC1P33527 1531 aa17.63■□□□□ 0.41
SLIRP-212ENST00000613856 PREX2Q70Z35 1606 aa17.63■□□□□ 0.41
SLIRP-212ENST00000613856 CDK11AQ9UQ88 783 aaPredicted RBP17.63■□□□□ 0.41
SLIRP-212ENST00000613856 MLH3Q9UHC1 1453 aa17.62■□□□□ 0.41
SLIRP-212ENST00000613856 AGLP35573 1532 aa17.62■□□□□ 0.41
SLIRP-212ENST00000613856 CAMSAP1Q5T5Y3 1602 aa17.61■□□□□ 0.41
SLIRP-212ENST00000613856 NCOA2Q15596 1464 aa17.6■□□□□ 0.41
SLIRP-212ENST00000613856 CDC42BPAQ5VT25 1732 aa17.59■□□□□ 0.41
SLIRP-212ENST00000613856 ZNF335Q9H4Z2 1342 aaPredicted RBP17.56■□□□□ 0.4
SLIRP-212ENST00000613856 IQSEC2Q5JU85 1478 aa17.56■□□□□ 0.4
SLIRP-212ENST00000613856 NCKAP5LQ9HCH0 1330 aa17.55■□□□□ 0.4
SLIRP-212ENST00000613856 TRIM26Q12899 539 aaPredicted RBP17.55■□□□□ 0.4
SLIRP-212ENST00000613856 RRBP1Q9P2E9 1410 aaKnown RBP17.55■□□□□ 0.4
SLIRP-212ENST00000613856 MROH2AA6NES4 1674 aa17.55■□□□□ 0.4
SLIRP-212ENST00000613856 CLTCQ00610 1675 aaKnown RBP17.54■□□□□ 0.4
SLIRP-212ENST00000613856 SAMD9LQ8IVG5 1584 aa17.53■□□□□ 0.4
SLIRP-212ENST00000613856 MYO3AQ8NEV4 1616 aa17.53■□□□□ 0.4
SLIRP-212ENST00000613856 MYOM3Q5VTT5 1437 aa17.53■□□□□ 0.4
SLIRP-212ENST00000613856 ESF1Q9H501 851 aaKnown RBP17.51■□□□□ 0.39
SLIRP-212ENST00000613856 ZNF142P52746 1687 aaPredicted RBP17.51■□□□□ 0.39
SLIRP-212ENST00000613856 SYCP2Q9BX26 1530 aa17.5■□□□□ 0.39
SLIRP-212ENST00000613856 FGD6Q6ZV73 1430 aa17.49■□□□□ 0.39
SLIRP-212ENST00000613856 CNTLNQ9NXG0 1405 aa17.49■□□□□ 0.39
SLIRP-212ENST00000613856 UBAP1LF5GYI3 381 aa17.49■□□□□ 0.39
SLIRP-212ENST00000613856 ZMYM3Q14202 1370 aa17.49■□□□□ 0.39
SLIRP-212ENST00000613856 NPATQ14207 1427 aa17.48■□□□□ 0.39
SLIRP-212ENST00000613856 MIA2Q96PC5 1412 aa17.47■□□□□ 0.39
SLIRP-212ENST00000613856 CCNB3Q8WWL7 1395 aa17.47■□□□□ 0.39
SLIRP-212ENST00000613856 CEP170BQ9Y4F5 1589 aaPredicted RBP17.47■□□□□ 0.39
SLIRP-212ENST00000613856 PTPN23Q9H3S7 1636 aa17.46■□□□□ 0.39
SLIRP-212ENST00000613856 PLXNC1O60486 1568 aa17.45■□□□□ 0.38
SLIRP-212ENST00000613856 TCOF1Q13428 1488 aaKnown RBP17.45■□□□□ 0.38
SLIRP-212ENST00000613856 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.45■□□□□ 0.38
SLIRP-212ENST00000613856 ZNF777Q9ULD5 760 aaPredicted RBP17.45■□□□□ 0.38
SLIRP-212ENST00000613856 GPATCH8Q9UKJ3 1502 aaKnown RBP17.45■□□□□ 0.38
SLIRP-212ENST00000613856 INO80Q9ULG1 1556 aaPredicted RBP17.45■□□□□ 0.38
SLIRP-212ENST00000613856 PTPRKQ15262 1439 aa17.44■□□□□ 0.38
SLIRP-212ENST00000613856 ATP7AQ04656 1500 aa17.43■□□□□ 0.38
SLIRP-212ENST00000613856 HNRNPMP52272 730 aaKnown RBP eCLIP17.43■□□□□ 0.385e-9■■■■■ 34.7
SLIRP-212ENST00000613856 MED1Q15648 1581 aaPredicted RBP17.42■□□□□ 0.38
SLIRP-212ENST00000613856 PLA2R1Q13018 1463 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms