RNA–Protein interactions for RNA: ENST00000611833.4

NEK3-206, Transcript of NIMA related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene NEK3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-206ENST00000611833 ROCK1Q13464 1354 aa24.35■■□□□ 1.49
NEK3-206ENST00000611833 FBLN2P98095 1184 aa24.34■■□□□ 1.49
NEK3-206ENST00000611833 ANP32CO43423 234 aa24.34■■□□□ 1.49
NEK3-206ENST00000611833 MPHOSPH9Q99550 1183 aa24.34■■□□□ 1.49
NEK3-206ENST00000611833 PRG4Q92954 1404 aaPredicted RBP24.33■■□□□ 1.49
NEK3-206ENST00000611833 NUP160Q12769 1436 aa24.33■■□□□ 1.48
NEK3-206ENST00000611833 TROQ12816 1431 aaPredicted RBP24.32■■□□□ 1.48
NEK3-206ENST00000611833 CCER2I3L3R5 266 aa24.28■■□□□ 1.48
NEK3-206ENST00000611833 JPH4Q96JJ6 628 aa24.28■■□□□ 1.48
NEK3-206ENST00000611833 CARMIL2Q6F5E8 1435 aa24.28■■□□□ 1.48
NEK3-206ENST00000611833 KIF14Q15058 1648 aa24.25■■□□□ 1.47
NEK3-206ENST00000611833 ADCY10Q96PN6 1610 aa24.25■■□□□ 1.47
NEK3-206ENST00000611833 FOXD1Q16676 465 aa24.25■■□□□ 1.47
NEK3-206ENST00000611833 ITSN2Q9NZM3 1697 aa24.25■■□□□ 1.47
NEK3-206ENST00000611833 CAMSAP2Q08AD1 1489 aa24.24■■□□□ 1.47
NEK3-206ENST00000611833 GPATCH8Q9UKJ3 1502 aaKnown RBP24.23■■□□□ 1.47
NEK3-206ENST00000611833 CFDP1Q9UEE9 299 aaPredicted RBP24.21■■□□□ 1.47
NEK3-206ENST00000611833 ANKRD30BQ9BXX2 1392 aa24.19■■□□□ 1.46
NEK3-206ENST00000611833 L3MBTL2Q969R5 705 aa24.18■■□□□ 1.46
NEK3-206ENST00000611833 ABCA8O94911 1581 aa24.17■■□□□ 1.46
NEK3-206ENST00000611833 RPRD2Q5VT52 1461 aaKnown RBP24.16■■□□□ 1.46
NEK3-206ENST00000611833 HSPA5P11021 654 aaKnown RBP24.16■■□□□ 1.46
NEK3-206ENST00000611833 ADGBQ8N7X0 1667 aa24.15■■□□□ 1.46
NEK3-206ENST00000611833 NCOA1Q15788 1441 aa24.15■■□□□ 1.46
NEK3-206ENST00000611833 CROCC2H7BZ55 1655 aa24.14■■□□□ 1.45
NEK3-206ENST00000611833 SLC4A1APQ9BWU0 796 aaKnown RBP24.13■■□□□ 1.45
NEK3-206ENST00000611833 ZNF777Q9ULD5 760 aaPredicted RBP24.13■■□□□ 1.45
NEK3-206ENST00000611833 ADGRL2O95490 1459 aa24.11■■□□□ 1.45
NEK3-206ENST00000611833 EIF4G2P78344 907 aaKnown RBP eCLIP24.11■■□□□ 1.45
NEK3-206ENST00000611833 TEX14Q8IWB6 1497 aa24.11■■□□□ 1.45
NEK3-206ENST00000611833 WASHC2AQ641Q2 1341 aa24.11■■□□□ 1.45
NEK3-206ENST00000611833 ATP10BO94823 1461 aa24.1■■□□□ 1.45
NEK3-206ENST00000611833 PZPP20742 1482 aa24.1■■□□□ 1.45
NEK3-206ENST00000611833 CDC42BPAQ5VT25 1732 aa24.09■■□□□ 1.45
NEK3-206ENST00000611833 PLEKHD1A6NEE1 506 aa24.08■■□□□ 1.45
NEK3-206ENST00000611833 ABCC10Q5T3U5 1492 aa24.07■■□□□ 1.44
NEK3-206ENST00000611833 NBPF8Q3BBV2 869 aa24.05■■□□□ 1.44
NEK3-206ENST00000611833 ANKRD30AQ9BXX3 1397 aa24.03■■□□□ 1.44
NEK3-206ENST00000611833 FKBP8Q14318 412 aa24.03■■□□□ 1.44
NEK3-206ENST00000611833 NEFLP07196 543 aa23.99■■□□□ 1.43
NEK3-206ENST00000611833 ANKRD50Q9ULJ7 1429 aa23.99■■□□□ 1.43
NEK3-206ENST00000611833 BCANQ96GW7 911 aa23.99■■□□□ 1.43
NEK3-206ENST00000611833 KIAA1107Q9UPP5 1409 aa23.98■■□□□ 1.43
NEK3-206ENST00000611833 PTPRGP23470 1445 aa23.97■■□□□ 1.43
NEK3-206ENST00000611833 SHANK2Q9UPX8 1470 aa23.97■■□□□ 1.43
NEK3-206ENST00000611833 C11orf95C9JLR9 678 aaPredicted RBP23.97■■□□□ 1.43
NEK3-206ENST00000611833 C9orf84Q5VXU9 1444 aa23.95■■□□□ 1.43
NEK3-206ENST00000611833 CNTLNQ9NXG0 1405 aa23.95■■□□□ 1.42
NEK3-206ENST00000611833 CCDC7Q96M83 1385 aa23.94■■□□□ 1.42
NEK3-206ENST00000611833 CHD1O14646 1710 aa23.93■■□□□ 1.42
NEK3-206ENST00000611833 SPATA31E1Q6ZUB1 1445 aa23.93■■□□□ 1.42
NEK3-206ENST00000611833 PKD2Q13563 968 aa23.93■■□□□ 1.42
NEK3-206ENST00000611833 MBD5Q9P267 1494 aa23.91■■□□□ 1.42
NEK3-206ENST00000611833 HNRNPUQ00839 825 aaKnown RBP eCLIP23.89■■□□□ 1.42
NEK3-206ENST00000611833 ARHGEF5Q12774 1597 aa23.88■■□□□ 1.41
NEK3-206ENST00000611833 TSPY4P0CV99 314 aa23.88■■□□□ 1.41
NEK3-206ENST00000611833 TSPY10P0CW01 314 aa23.88■■□□□ 1.41
NEK3-206ENST00000611833 TSHZ2Q9NRE2 1034 aa23.88■■□□□ 1.41
NEK3-206ENST00000611833 POLR1AO95602 1720 aaPredicted RBP23.87■■□□□ 1.41
NEK3-206ENST00000611833 HNRNPMP52272 730 aaKnown RBP eCLIP23.87■■□□□ 1.41
NEK3-206ENST00000611833 NUP155O75694 1391 aa23.86■■□□□ 1.41
NEK3-206ENST00000611833 CDC42BPBQ9Y5S2 1711 aa23.86■■□□□ 1.41
NEK3-206ENST00000611833 SAMD9LQ8IVG5 1584 aa23.85■■□□□ 1.41
NEK3-206ENST00000611833 PREX2Q70Z35 1606 aa23.85■■□□□ 1.41
NEK3-206ENST00000611833 SHROOM2Q13796 1616 aa23.84■■□□□ 1.41
NEK3-206ENST00000611833 KDM5DQ9BY66 1539 aa23.84■■□□□ 1.41
NEK3-206ENST00000611833 KIF7Q2M1P5 1343 aa23.84■■□□□ 1.41
NEK3-206ENST00000611833 KIF15Q9NS87 1388 aa23.83■■□□□ 1.41
NEK3-206ENST00000611833 CCDC141Q6ZP82 1450 aa23.8■■□□□ 1.4
NEK3-206ENST00000611833 PRKRIP1Q9H875 184 aaPredicted RBP23.79■■□□□ 1.4
NEK3-206ENST00000611833 CCDC184Q52MB2 194 aa23.78■■□□□ 1.4
NEK3-206ENST00000611833 MYT1Q01538 1121 aa23.77■■□□□ 1.4
NEK3-206ENST00000611833 ZNF326Q5BKZ1 582 aaKnown RBP23.77■■□□□ 1.4
NEK3-206ENST00000611833 ERCC6L2Q5T890 1561 aa23.76■■□□□ 1.39
NEK3-206ENST00000611833 TTC37Q6PGP7 1564 aa23.76■■□□□ 1.39
NEK3-206ENST00000611833 USP47Q96K76 1375 aa23.75■■□□□ 1.39
NEK3-206ENST00000611833 BCORL1Q5H9F3 1711 aa23.74■■□□□ 1.39
NEK3-206ENST00000611833 UHRF1BP1Q6BDS2 1440 aa23.74■■□□□ 1.39
NEK3-206ENST00000611833 KDM5CP41229 1560 aa23.74■■□□□ 1.39
NEK3-206ENST00000611833 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.74■■□□□ 1.39
NEK3-206ENST00000611833 SYCP2Q9BX26 1530 aa23.73■■□□□ 1.39
NEK3-206ENST00000611833 RSPH4AQ5TD94 716 aa23.72■■□□□ 1.39
NEK3-206ENST00000611833 MRS2Q9HD23 443 aa23.72■■□□□ 1.39
NEK3-206ENST00000611833 ABCC2Q92887 1545 aa23.72■■□□□ 1.39
NEK3-206ENST00000611833 ARHGEF12Q9NZN5 1544 aa23.72■■□□□ 1.39
NEK3-206ENST00000611833 ARHGAP5Q13017 1502 aa23.71■■□□□ 1.39
NEK3-206ENST00000611833 FAM9BQ8IZU0 186 aa23.71■■□□□ 1.39
NEK3-206ENST00000611833 RALGAPBQ86X10 1494 aa23.7■■□□□ 1.38
NEK3-206ENST00000611833 FAM135AQ9P2D6 1515 aa23.69■■□□□ 1.38
NEK3-206ENST00000611833 MAST1Q9Y2H9 1570 aa23.67■■□□□ 1.38
NEK3-206ENST00000611833 MYO5CQ9NQX4 1742 aa23.66■■□□□ 1.38
NEK3-206ENST00000611833 POLR3GLQ9BT43 218 aa23.65■■□□□ 1.38
NEK3-206ENST00000611833 DHX29Q7Z478 1369 aaKnown RBP23.64■■□□□ 1.37
NEK3-206ENST00000611833 KDM2AQ9Y2K7 1162 aa23.62■■□□□ 1.37
NEK3-206ENST00000611833 UNC13BO14795 1591 aa23.62■■□□□ 1.37
NEK3-206ENST00000611833 CARD11Q9BXL7 1154 aa23.61■■□□□ 1.37
NEK3-206ENST00000611833 ARID4BQ4LE39 1312 aaPredicted RBP23.61■■□□□ 1.37
NEK3-206ENST00000611833 DCAF11Q8TEB1 546 aa23.61■■□□□ 1.37
NEK3-206ENST00000611833 PLXNC1O60486 1568 aa23.6■■□□□ 1.37
NEK3-206ENST00000611833 IRX6P78412 446 aaPredicted RBP23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms