RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 TTC37Q6PGP7 1564 aa15.67■□□□□ 0.1
VRK3-224ENST00000601849 HECW1Q76N89 1606 aa15.67■□□□□ 0.1
VRK3-224ENST00000601849 ZMYM4Q5VZL5 1548 aa15.67■□□□□ 0.1
VRK3-224ENST00000601849 PCF11O94913 1555 aaKnown RBP15.66■□□□□ 0.1
VRK3-224ENST00000601849 CHIC1Q5VXU3 224 aa15.66■□□□□ 0.1
VRK3-224ENST00000601849 RIMS1Q86UR5 1692 aaKnown RBP15.65■□□□□ 0.1
VRK3-224ENST00000601849 YEATS2Q9ULM3 1422 aa15.64■□□□□ 0.09
VRK3-224ENST00000601849 ATP10AO60312 1499 aa15.64■□□□□ 0.09
VRK3-224ENST00000601849 LMTK3Q96Q04 1460 aa15.63■□□□□ 0.09
VRK3-224ENST00000601849 ARHGAP35Q9NRY4 1499 aa15.63■□□□□ 0.09
VRK3-224ENST00000601849 TROQ12816 1431 aaPredicted RBP15.61■□□□□ 0.09
VRK3-224ENST00000601849 ZNF518AQ6AHZ1 1483 aa15.61■□□□□ 0.09
VRK3-224ENST00000601849 MYO5CQ9NQX4 1742 aa15.61■□□□□ 0.09
VRK3-224ENST00000601849 HSPA2P54652 639 aa15.61■□□□□ 0.09
VRK3-224ENST00000601849 ESF1Q9H501 851 aaKnown RBP15.61■□□□□ 0.09
VRK3-224ENST00000601849 KIF14Q15058 1648 aa15.61■□□□□ 0.09
VRK3-224ENST00000601849 C9orf84Q5VXU9 1444 aa15.6■□□□□ 0.09
VRK3-224ENST00000601849 ARHGAP5Q13017 1502 aa15.6■□□□□ 0.09
VRK3-224ENST00000601849 AFAP1Q8N556 730 aa15.6■□□□□ 0.09
VRK3-224ENST00000601849 DMRT2Q9Y5R5 561 aa15.58■□□□□ 0.08
VRK3-224ENST00000601849 FER1L4A9Z1Z3 1794 aa15.54■□□□□ 0.08
VRK3-224ENST00000601849 CCDC18Q5T9S5 1454 aa15.54■□□□□ 0.08
VRK3-224ENST00000601849 CEBPAP49715 358 aaPredicted RBP15.53■□□□□ 0.08
VRK3-224ENST00000601849 CASKIN1Q8WXD9 1431 aa15.52■□□□□ 0.08
VRK3-224ENST00000601849 CERKQ8TCT0 537 aa15.52■□□□□ 0.08
VRK3-224ENST00000601849 ARHGEF12Q9NZN5 1544 aa15.52■□□□□ 0.07
VRK3-224ENST00000601849 ZNF777Q9ULD5 760 aaPredicted RBP15.5■□□□□ 0.07
VRK3-224ENST00000601849 MLH3Q9UHC1 1453 aa15.5■□□□□ 0.07
VRK3-224ENST00000601849 UHRF1BP1Q6BDS2 1440 aa15.49■□□□□ 0.07
VRK3-224ENST00000601849 KDM5CP41229 1560 aa15.49■□□□□ 0.07
VRK3-224ENST00000601849 SIGLEC1Q9BZZ2 1709 aa15.48■□□□□ 0.07
VRK3-224ENST00000601849 PREX1Q8TCU6 1659 aa15.46■□□□□ 0.07
VRK3-224ENST00000601849 CDC42BPBQ9Y5S2 1711 aa15.45■□□□□ 0.06
VRK3-224ENST00000601849 FYCO1Q9BQS8 1478 aa15.45■□□□□ 0.06
VRK3-224ENST00000601849 REREQ9P2R6 1566 aa15.45■□□□□ 0.06
VRK3-224ENST00000601849 DIP2CQ9Y2E4 1556 aa15.44■□□□□ 0.06
VRK3-224ENST00000601849 SPAG9O60271 1321 aaKnown RBP15.43■□□□□ 0.06
VRK3-224ENST00000601849 CNTLNQ9NXG0 1405 aa15.43■□□□□ 0.06
VRK3-224ENST00000601849 TRAPPC8Q9Y2L5 1435 aa15.43■□□□□ 0.06
VRK3-224ENST00000601849 PREX2Q70Z35 1606 aa15.43■□□□□ 0.06
VRK3-224ENST00000601849 CFDP1Q9UEE9 299 aaPredicted RBP15.43■□□□□ 0.06
VRK3-224ENST00000601849 SETD1BQ9UPS6 1966 aaKnown RBP15.43■□□□□ 0.06
VRK3-224ENST00000601849 ABCC1P33527 1531 aa15.43■□□□□ 0.06
VRK3-224ENST00000601849 AGLP35573 1532 aa15.43■□□□□ 0.06
VRK3-224ENST00000601849 LRRIQ1Q96JM4 1722 aa15.42■□□□□ 0.06
VRK3-224ENST00000601849 HNRNPMP52272 730 aaKnown RBP eCLIP15.41■□□□□ 0.06
VRK3-224ENST00000601849 CCNB3Q8WWL7 1395 aa15.4■□□□□ 0.06
VRK3-224ENST00000601849 ABCA6Q8N139 1617 aa15.39■□□□□ 0.05
VRK3-224ENST00000601849 MTUS2Q5JR59 1369 aa15.39■□□□□ 0.05
VRK3-224ENST00000601849 PLEKHH2Q8IVE3 1493 aa15.39■□□□□ 0.05
VRK3-224ENST00000601849 ITSN2Q9NZM3 1697 aa15.38■□□□□ 0.05
VRK3-224ENST00000601849 GPATCH8Q9UKJ3 1502 aaKnown RBP15.37■□□□□ 0.05
VRK3-224ENST00000601849 KIAA1107Q9UPP5 1409 aa15.36■□□□□ 0.05
VRK3-224ENST00000601849 CDC42BPAQ5VT25 1732 aa15.36■□□□□ 0.05
VRK3-224ENST00000601849 PTPRTO14522 1441 aa15.35■□□□□ 0.05
VRK3-224ENST00000601849 PPP6R1Q9UPN7 881 aa15.35■□□□□ 0.05
VRK3-224ENST00000601849 ZMYM3Q14202 1370 aa15.35■□□□□ 0.05
VRK3-224ENST00000601849 C3P01024 1663 aa15.35■□□□□ 0.05
VRK3-224ENST00000601849 KIDINS220Q9ULH0 1771 aa15.34■□□□□ 0.05
VRK3-224ENST00000601849 SAMD9LQ8IVG5 1584 aa15.34■□□□□ 0.05
VRK3-224ENST00000601849 GGT6Q6P531 493 aa15.34■□□□□ 0.05
VRK3-224ENST00000601849 NPATQ14207 1427 aa15.33■□□□□ 0.04
VRK3-224ENST00000601849 SYCP2Q9BX26 1530 aa15.33■□□□□ 0.04
VRK3-224ENST00000601849 STRCQ7RTU9 1775 aa15.31■□□□□ 0.04
VRK3-224ENST00000601849 A2MP01023 1474 aa15.3■□□□□ 0.04
VRK3-224ENST00000601849 ATP7AQ04656 1500 aa15.29■□□□□ 0.04
VRK3-224ENST00000601849 RSPH4AQ5TD94 716 aa15.29■□□□□ 0.04
VRK3-224ENST00000601849 PKD2Q13563 968 aa15.28■□□□□ 0.04
VRK3-224ENST00000601849 SUPT6HQ7KZ85 1726 aaKnown RBP15.28■□□□□ 0.04
VRK3-224ENST00000601849 MROH2AA6NES4 1674 aa15.28■□□□□ 0.04
VRK3-224ENST00000601849 NCOA1Q15788 1441 aa15.27■□□□□ 0.04
VRK3-224ENST00000601849 CAMSAP1Q5T5Y3 1602 aa15.25■□□□□ 0.03
VRK3-224ENST00000601849 ZNF644Q9H582 1327 aaPredicted RBP15.24■□□□□ 0.03
VRK3-224ENST00000601849 NCKAP5LQ9HCH0 1330 aa15.24■□□□□ 0.03
VRK3-224ENST00000601849 TSPY4P0CV99 314 aa15.24■□□□□ 0.03
VRK3-224ENST00000601849 TSPY10P0CW01 314 aa15.24■□□□□ 0.03
VRK3-224ENST00000601849 RTEL1-TNFRSF6BF6WH68 1400 aa15.24■□□□□ 0.03
VRK3-224ENST00000601849 DISP3Q9P2K9 1392 aa15.24■□□□□ 0.03
VRK3-224ENST00000601849 IQSEC2Q5JU85 1478 aa15.23■□□□□ 0.03
VRK3-224ENST00000601849 INO80Q9ULG1 1556 aaPredicted RBP15.23■□□□□ 0.03
VRK3-224ENST00000601849 DHX29Q7Z478 1369 aaKnown RBP15.23■□□□□ 0.03
VRK3-224ENST00000601849 EHBP1L1Q8N3D4 1523 aa15.22■□□□□ 0.03
VRK3-224ENST00000601849 KIF3BO15066 747 aa15.22■□□□□ 0.03
VRK3-224ENST00000601849 CEP162Q5TB80 1403 aa15.22■□□□□ 0.03
VRK3-224ENST00000601849 CLTCQ00610 1675 aaKnown RBP15.22■□□□□ 0.03
VRK3-224ENST00000601849 PLXNC1O60486 1568 aa15.21■□□□□ 0.03
VRK3-224ENST00000601849 ADGBQ8N7X0 1667 aa15.21■□□□□ 0.03
VRK3-224ENST00000601849 WASHC2CQ9Y4E1 1318 aa15.2■□□□□ 0.02
VRK3-224ENST00000601849 PTPRKQ15262 1439 aa15.2■□□□□ 0.02
VRK3-224ENST00000601849 PLA2R1Q13018 1463 aa15.19■□□□□ 0.02
VRK3-224ENST00000601849 MBD5Q9P267 1494 aa15.19■□□□□ 0.02
VRK3-224ENST00000601849 TIAM1Q13009 1591 aa15.19■□□□□ 0.02
VRK3-224ENST00000601849 UBAP1LF5GYI3 381 aa15.18■□□□□ 0.02
VRK3-224ENST00000601849 LTBP4Q8N2S1 1624 aa15.17■□□□□ 0.02
VRK3-224ENST00000601849 ZNF335Q9H4Z2 1342 aaPredicted RBP15.17■□□□□ 0.02
VRK3-224ENST00000601849 CEP170BQ9Y4F5 1589 aaPredicted RBP15.16■□□□□ 0.02
VRK3-224ENST00000601849 CCDC141Q6ZP82 1450 aa15.16■□□□□ 0.02
VRK3-224ENST00000601849 THEMISQ8N1K5 641 aaPredicted RBP15.16■□□□□ 0.02
VRK3-224ENST00000601849 MYO3AQ8NEV4 1616 aa15.15■□□□□ 0.02
VRK3-224ENST00000601849 NCOA2Q15596 1464 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms