RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 C11orf95C9JLR9 678 aaPredicted RBP22.88■■□□□ 1.25
LIG1-206ENST00000594067 DISP1Q96F81 1524 aa22.88■■□□□ 1.25
LIG1-206ENST00000594067 ROCK1Q13464 1354 aa22.88■■□□□ 1.25
LIG1-206ENST00000594067 ANKRD30BQ9BXX2 1392 aa22.88■■□□□ 1.25
LIG1-206ENST00000594067 NUP153P49790 1475 aaKnown RBP22.87■■□□□ 1.25
LIG1-206ENST00000594067 KIAA0586Q9BVV6 1533 aa22.87■■□□□ 1.25
LIG1-206ENST00000594067 NBPF8Q3BBV2 869 aa22.87■■□□□ 1.25
LIG1-206ENST00000594067 KIAA0556O60303 1618 aa22.87■■□□□ 1.25
LIG1-206ENST00000594067 CNTLNQ9NXG0 1405 aa22.86■■□□□ 1.25
LIG1-206ENST00000594067 IFT140Q96RY7 1462 aa22.86■■□□□ 1.25
LIG1-206ENST00000594067 SLC4A1APQ9BWU0 796 aaKnown RBP22.85■■□□□ 1.25
LIG1-206ENST00000594067 CCDC184Q52MB2 194 aa22.85■■□□□ 1.25
LIG1-206ENST00000594067 DNMT1P26358 1616 aaKnown RBP22.83■■□□□ 1.25
LIG1-206ENST00000594067 RPRD2Q5VT52 1461 aaKnown RBP22.83■■□□□ 1.25
LIG1-206ENST00000594067 CCDC7Q96M83 1385 aa22.83■■□□□ 1.24
LIG1-206ENST00000594067 CDK11AQ9UQ88 783 aaPredicted RBP22.83■■□□□ 1.24
LIG1-206ENST00000594067 NCOA1Q15788 1441 aa22.82■■□□□ 1.24
LIG1-206ENST00000594067 IRX6P78412 446 aaPredicted RBP22.8■■□□□ 1.24
LIG1-206ENST00000594067 RAPGEF6Q8TEU7 1601 aa22.8■■□□□ 1.24
LIG1-206ENST00000594067 TEX14Q8IWB6 1497 aa22.79■■□□□ 1.24
LIG1-206ENST00000594067 PRG4Q92954 1404 aaPredicted RBP22.78■■□□□ 1.24
LIG1-206ENST00000594067 GRIN2AQ12879 1464 aa22.78■■□□□ 1.24
LIG1-206ENST00000594067 PRKRIP1Q9H875 184 aaPredicted RBP22.78■■□□□ 1.24
LIG1-206ENST00000594067 CFDP1Q9UEE9 299 aaPredicted RBP22.75■■□□□ 1.23
LIG1-206ENST00000594067 FAM9BQ8IZU0 186 aa22.74■■□□□ 1.23
LIG1-206ENST00000594067 ZNF777Q9ULD5 760 aaPredicted RBP22.74■■□□□ 1.23
LIG1-206ENST00000594067 TROQ12816 1431 aaPredicted RBP22.73■■□□□ 1.23
LIG1-206ENST00000594067 KIF7Q2M1P5 1343 aa22.73■■□□□ 1.23
LIG1-206ENST00000594067 MSH5O43196 834 aa22.73■■□□□ 1.23
LIG1-206ENST00000594067 MRS2Q9HD23 443 aa22.72■■□□□ 1.23
LIG1-206ENST00000594067 CAMSAP2Q08AD1 1489 aa22.71■■□□□ 1.23
LIG1-206ENST00000594067 BCL11AQ9H165 835 aa22.71■■□□□ 1.23
LIG1-206ENST00000594067 EIF4G3O43432 1585 aaKnown RBP22.71■■□□□ 1.23
LIG1-206ENST00000594067 PZPP20742 1482 aa22.71■■□□□ 1.23
LIG1-206ENST00000594067 SPATA31E1Q6ZUB1 1445 aa22.7■■□□□ 1.23
LIG1-206ENST00000594067 PLB1Q6P1J6 1458 aa22.7■■□□□ 1.22
LIG1-206ENST00000594067 CHMP7Q8WUX9 453 aaPredicted RBP22.69■■□□□ 1.22
LIG1-206ENST00000594067 FBLN2P98095 1184 aa22.67■■□□□ 1.22
LIG1-206ENST00000594067 GPATCH8Q9UKJ3 1502 aaKnown RBP22.67■■□□□ 1.22
LIG1-206ENST00000594067 ZNF326Q5BKZ1 582 aaKnown RBP22.65■■□□□ 1.22
LIG1-206ENST00000594067 FANCIQ9NVI1 1328 aa22.64■■□□□ 1.21
LIG1-206ENST00000594067 KIF14Q15058 1648 aa22.64■■□□□ 1.21
LIG1-206ENST00000594067 PKD2Q13563 968 aa22.63■■□□□ 1.21
LIG1-206ENST00000594067 CEP170Q5SW79 1584 aa22.62■■□□□ 1.21
LIG1-206ENST00000594067 KIAA1107Q9UPP5 1409 aa22.62■■□□□ 1.21
LIG1-206ENST00000594067 CNGB1Q14028 1251 aaPredicted RBP22.61■■□□□ 1.21
LIG1-206ENST00000594067 POLR3GLQ9BT43 218 aa22.61■■□□□ 1.21
LIG1-206ENST00000594067 ITSN2Q9NZM3 1697 aa22.6■■□□□ 1.21
LIG1-206ENST00000594067 ERICH6BQ5W0A0 696 aa22.59■■□□□ 1.21
LIG1-206ENST00000594067 MAGI1Q96QZ7 1491 aaPredicted RBP22.59■■□□□ 1.21
LIG1-206ENST00000594067 ZBED9Q6R2W3 1325 aa22.59■■□□□ 1.21
LIG1-206ENST00000594067 ADGBQ8N7X0 1667 aa22.59■■□□□ 1.21
LIG1-206ENST00000594067 ANKRD30AQ9BXX3 1397 aa22.58■■□□□ 1.21
LIG1-206ENST00000594067 JPH4Q96JJ6 628 aa22.58■■□□□ 1.21
LIG1-206ENST00000594067 ADGRL2O95490 1459 aa22.58■■□□□ 1.21
LIG1-206ENST00000594067 SYNJ2O15056 1496 aa22.57■■□□□ 1.2
LIG1-206ENST00000594067 MBD5Q9P267 1494 aa22.57■■□□□ 1.2
LIG1-206ENST00000594067 USP47Q96K76 1375 aa22.56■■□□□ 1.2
LIG1-206ENST00000594067 CARMIL2Q6F5E8 1435 aa22.56■■□□□ 1.2
LIG1-206ENST00000594067 ERCC6Q03468 1493 aa22.56■■□□□ 1.2
LIG1-206ENST00000594067 ANKRD50Q9ULJ7 1429 aa22.55■■□□□ 1.2
LIG1-206ENST00000594067 ADCY10Q96PN6 1610 aa22.55■■□□□ 1.2
LIG1-206ENST00000594067 POLR1AO95602 1720 aaPredicted RBP22.54■■□□□ 1.2
LIG1-206ENST00000594067 PPP4R2Q9NY27 417 aa22.54■■□□□ 1.2
LIG1-206ENST00000594067 CROCC2H7BZ55 1655 aa22.53■■□□□ 1.2
LIG1-206ENST00000594067 PLEKHD1A6NEE1 506 aa22.53■■□□□ 1.2
LIG1-206ENST00000594067 DHX29Q7Z478 1369 aaKnown RBP22.52■■□□□ 1.2
LIG1-206ENST00000594067 NUP155O75694 1391 aa22.5■■□□□ 1.19
LIG1-206ENST00000594067 BCORL1Q5H9F3 1711 aa22.5■■□□□ 1.19
LIG1-206ENST00000594067 NUP160Q12769 1436 aa22.48■■□□□ 1.19
LIG1-206ENST00000594067 C9orf84Q5VXU9 1444 aa22.47■■□□□ 1.19
LIG1-206ENST00000594067 B4GALNT3Q6L9W6 998 aa22.46■■□□□ 1.19
LIG1-206ENST00000594067 ATP10BO94823 1461 aa22.45■■□□□ 1.18
LIG1-206ENST00000594067 ABCC10Q5T3U5 1492 aa22.45■■□□□ 1.18
LIG1-206ENST00000594067 KDM5CP41229 1560 aa22.44■■□□□ 1.18
LIG1-206ENST00000594067 TSPY4P0CV99 314 aa22.44■■□□□ 1.18
LIG1-206ENST00000594067 TSPY10P0CW01 314 aa22.44■■□□□ 1.18
LIG1-206ENST00000594067 CARD11Q9BXL7 1154 aa22.44■■□□□ 1.18
LIG1-206ENST00000594067 CDC42BPAQ5VT25 1732 aa22.43■■□□□ 1.18
LIG1-206ENST00000594067 KDM2AQ9Y2K7 1162 aa22.43■■□□□ 1.18
LIG1-206ENST00000594067 HNRNPMP52272 730 aaKnown RBP eCLIP22.43■■□□□ 1.18
LIG1-206ENST00000594067 ABCA8O94911 1581 aa22.42■■□□□ 1.18
LIG1-206ENST00000594067 UHRF1BP1Q6BDS2 1440 aa22.41■■□□□ 1.18
LIG1-206ENST00000594067 SHANK2Q9UPX8 1470 aa22.41■■□□□ 1.18
LIG1-206ENST00000594067 ARID4BQ4LE39 1312 aaPredicted RBP22.41■■□□□ 1.18
LIG1-206ENST00000594067 SENP3-EIF4A1A0A087X0R7 540 aa22.4■■□□□ 1.18
LIG1-206ENST00000594067 ERICH6Q7L0X2 663 aa22.4■■□□□ 1.18
LIG1-206ENST00000594067 RALGAPBQ86X10 1494 aa22.4■■□□□ 1.18
LIG1-206ENST00000594067 KIF15Q9NS87 1388 aa22.38■■□□□ 1.17
LIG1-206ENST00000594067 DCAF11Q8TEB1 546 aa22.37■■□□□ 1.17
LIG1-206ENST00000594067 SMG6Q86US8 1419 aaKnown RBP22.36■■□□□ 1.17
LIG1-206ENST00000594067 ST20-MTHFSA0A0A6YYL1 179 aa22.36■■□□□ 1.17
LIG1-206ENST00000594067 ROCK2O75116 1388 aaKnown RBP22.35■■□□□ 1.17
LIG1-206ENST00000594067 NUDCQ9Y266 331 aa22.34■■□□□ 1.17
LIG1-206ENST00000594067 TMC1Q8TDI8 760 aa22.34■■□□□ 1.17
LIG1-206ENST00000594067 KDM5DQ9BY66 1539 aa22.33■■□□□ 1.17
LIG1-206ENST00000594067 ARHGEF12Q9NZN5 1544 aa22.33■■□□□ 1.17
LIG1-206ENST00000594067 PNISRQ8TF01 805 aaKnown RBP22.33■■□□□ 1.17
LIG1-206ENST00000594067 PTPRGP23470 1445 aa22.3■■□□□ 1.16
LIG1-206ENST00000594067 ARHGEF5Q12774 1597 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms