RNA–Protein interactions for RNA: ENST00000592705.5

DNMT1-228, Transcript of DNA methyltransferase 1, humanhuman

TSL 1 (best)

Gene DNMT1, Length 5,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-228ENST00000592705 DCAF11Q8TEB1 546 aa16.48■□□□□ 0.23
DNMT1-228ENST00000592705 SOX12O15370 315 aa16.47■□□□□ 0.23
DNMT1-228ENST00000592705 TMF1P82094 1093 aa16.47■□□□□ 0.23
DNMT1-228ENST00000592705 RSPH4AQ5TD94 716 aa16.47■□□□□ 0.23
DNMT1-228ENST00000592705 CC2D1BQ5T0F9 858 aaKnown RBP16.46■□□□□ 0.23
DNMT1-228ENST00000592705 STK26Q9P289 416 aa16.46■□□□□ 0.23
DNMT1-228ENST00000592705 RUSC2Q8N2Y8 1516 aa16.45■□□□□ 0.22
DNMT1-228ENST00000592705 MPHOSPH9Q99550 1183 aa16.45■□□□□ 0.22
DNMT1-228ENST00000592705 TSHZ2Q9NRE2 1034 aa16.45■□□□□ 0.22
DNMT1-228ENST00000592705 SAFB2Q14151 953 aaKnown RBP eCLIP16.45■□□□□ 0.22
DNMT1-228ENST00000592705 FTSJ3Q8IY81 847 aaKnown RBP16.43■□□□□ 0.22
DNMT1-228ENST00000592705 LAS1LQ9Y4W2 734 aaKnown RBP16.43■□□□□ 0.22
DNMT1-228ENST00000592705 MEX3CQ5U5Q3 659 aaKnown RBP16.43■□□□□ 0.22
DNMT1-228ENST00000592705 GOLGA6L22H0YM25 854 aa16.42■□□□□ 0.22
DNMT1-228ENST00000592705 MAPK8IP3Q9UPT6 1336 aa16.42■□□□□ 0.22
DNMT1-228ENST00000592705 PKD2Q13563 968 aa16.41■□□□□ 0.22
DNMT1-228ENST00000592705 RGS3P49796 1198 aa16.41■□□□□ 0.22
DNMT1-228ENST00000592705 PHF23Q9BUL5 403 aaPredicted RBP16.41■□□□□ 0.22
DNMT1-228ENST00000592705 KTN1Q86UP2 1357 aaKnown RBP16.39■□□□□ 0.21
DNMT1-228ENST00000592705 TRIM44Q96DX7 344 aaPredicted RBP16.39■□□□□ 0.21
DNMT1-228ENST00000592705 FOXD1Q16676 465 aa16.39■□□□□ 0.21
DNMT1-228ENST00000592705 TMX4Q9H1E5 349 aaPredicted RBP16.39■□□□□ 0.21
DNMT1-228ENST00000592705 MS4A1P11836 297 aa16.38■□□□□ 0.21
DNMT1-228ENST00000592705 RALBP1Q15311 655 aa16.38■□□□□ 0.21
DNMT1-228ENST00000592705 NEUROD2Q15784 382 aa16.38■□□□□ 0.21
DNMT1-228ENST00000592705 HDGFL2Q7Z4V5 671 aaPredicted RBP16.37■□□□□ 0.21
DNMT1-228ENST00000592705 FHOD3Q2V2M9 1422 aa16.37■□□□□ 0.21
DNMT1-228ENST00000592705 DCAF8L1A6NGE4 600 aa16.36■□□□□ 0.21
DNMT1-228ENST00000592705 FRAT1Q92837 279 aaPredicted RBP16.36■□□□□ 0.21
DNMT1-228ENST00000592705 NGDNQ8NEJ9 315 aaKnown RBP16.34■□□□□ 0.21
DNMT1-228ENST00000592705 ANKRD30AQ9BXX3 1397 aa16.34■□□□□ 0.21
DNMT1-228ENST00000592705 HNRNPMP52272 730 aaKnown RBP eCLIP16.34■□□□□ 0.21
DNMT1-228ENST00000592705 PNNQ9H307 717 aaKnown RBP16.34■□□□□ 0.21
DNMT1-228ENST00000592705 CHMP4BQ9H444 224 aaKnown RBP16.34■□□□□ 0.21
DNMT1-228ENST00000592705 L3MBTL2Q969R5 705 aa16.33■□□□□ 0.21
DNMT1-228ENST00000592705 NCLP19338 710 aaKnown RBP16.33■□□□□ 0.21
DNMT1-228ENST00000592705 CASC1Q6TDU7 716 aa16.33■□□□□ 0.2
DNMT1-228ENST00000592705 DEKP35659 375 aaKnown RBP16.32■□□□□ 0.2
DNMT1-228ENST00000592705 RCAN3Q9UKA8 241 aa16.32■□□□□ 0.2
DNMT1-228ENST00000592705 GOLGA2Q08379 1002 aa16.32■□□□□ 0.2
DNMT1-228ENST00000592705 TNNT2P45379 298 aaPredicted RBP16.31■□□□□ 0.2
DNMT1-228ENST00000592705 ROCK2O75116 1388 aaKnown RBP16.31■□□□□ 0.2
DNMT1-228ENST00000592705 TCERG1O14776 1098 aaKnown RBP16.31■□□□□ 0.2
DNMT1-228ENST00000592705 U2SURPO15042 1029 aaKnown RBP16.3■□□□□ 0.2
DNMT1-228ENST00000592705 NUP155O75694 1391 aa16.3■□□□□ 0.2
DNMT1-228ENST00000592705 CCDC18Q5T9S5 1454 aa16.27■□□□□ 0.2
DNMT1-228ENST00000592705 RTF1Q92541 710 aaKnown RBP16.25■□□□□ 0.19
DNMT1-228ENST00000592705 NCAPD3P42695 1498 aa16.24■□□□□ 0.19
DNMT1-228ENST00000592705 MORC1Q86VD1 984 aa16.24■□□□□ 0.19
DNMT1-228ENST00000592705 GAPVD1Q14C86 1478 aa16.24■□□□□ 0.19
DNMT1-228ENST00000592705 EVA1CP58658 441 aa16.23■□□□□ 0.19
DNMT1-228ENST00000592705 PDE3BQ13370 1112 aa16.23■□□□□ 0.19
DNMT1-228ENST00000592705 KIF21BO75037 1637 aa16.23■□□□□ 0.19
DNMT1-228ENST00000592705 ZNF330Q9Y3S2 320 aaPredicted RBP16.22■□□□□ 0.19
DNMT1-228ENST00000592705 HSP90AB1P08238 724 aaKnown RBP16.21■□□□□ 0.19
DNMT1-228ENST00000592705 ATF3P18847 181 aa16.21■□□□□ 0.19
DNMT1-228ENST00000592705 NLRP13Q86W25 1043 aa16.21■□□□□ 0.19
DNMT1-228ENST00000592705 IPO9Q96P70 1041 aaKnown RBP16.21■□□□□ 0.19
DNMT1-228ENST00000592705 RTN4Q9NQC3 1192 aaKnown RBP16.21■□□□□ 0.18
DNMT1-228ENST00000592705 NUTM2DQ5VT03 806 aaPredicted RBP16.2■□□□□ 0.18
DNMT1-228ENST00000592705 HSCBQ8IWL3 235 aa16.2■□□□□ 0.18
DNMT1-228ENST00000592705 NUTM2FA1L443 756 aa16.19■□□□□ 0.18
DNMT1-228ENST00000592705 KIF15Q9NS87 1388 aa16.19■□□□□ 0.18
DNMT1-228ENST00000592705 L1TD1Q5T7N2 865 aaKnown RBP16.19■□□□□ 0.18
DNMT1-228ENST00000592705 PHLDB1Q86UU1 1377 aa16.18■□□□□ 0.18
DNMT1-228ENST00000592705 PRKRIP1Q9H875 184 aaPredicted RBP16.18■□□□□ 0.18
DNMT1-228ENST00000592705 MSH5O43196 834 aa16.17■□□□□ 0.18
DNMT1-228ENST00000592705 TERF2IPQ9NYB0 399 aa16.17■□□□□ 0.18
DNMT1-228ENST00000592705 ZBED9Q6R2W3 1325 aa16.17■□□□□ 0.18
DNMT1-228ENST00000592705 PTMAP06454 111 aaKnown RBP16.17■□□□□ 0.18
DNMT1-228ENST00000592705 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.16■□□□□ 0.18
DNMT1-228ENST00000592705 AQRO60306 1485 aaKnown RBP eCLIP16.16■□□□□ 0.182e-7■■■■■ 31.8
DNMT1-228ENST00000592705 VGFO15240 615 aaPredicted RBP16.16■□□□□ 0.18
DNMT1-228ENST00000592705 CHMP4AQ9BY43 222 aa16.16■□□□□ 0.18
DNMT1-228ENST00000592705 EIF3AQ14152 1382 aaKnown RBP16.16■□□□□ 0.18
DNMT1-228ENST00000592705 DNAJC5BQ9UF47 199 aa16.16■□□□□ 0.18
DNMT1-228ENST00000592705 MRC2Q9UBG0 1479 aa16.16■□□□□ 0.18
DNMT1-228ENST00000592705 MYBBP1AQ9BQG0 1328 aaKnown RBP16.16■□□□□ 0.18
DNMT1-228ENST00000592705 OS9Q13438 667 aaPredicted RBP16.15■□□□□ 0.18
DNMT1-228ENST00000592705 IGF1RP08069 1367 aa16.14■□□□□ 0.18
DNMT1-228ENST00000592705 CFAP44Q96MT7 982 aa16.14■□□□□ 0.17
DNMT1-228ENST00000592705 NAP1L5Q96NT1 182 aaPredicted RBP16.14■□□□□ 0.17
DNMT1-228ENST00000592705 AMPHP49418 695 aa16.13■□□□□ 0.17
DNMT1-228ENST00000592705 G3V3G9 751 aa16.13■□□□□ 0.17
DNMT1-228ENST00000592705 DCAF8Q5TAQ9 597 aa16.13■□□□□ 0.17
DNMT1-228ENST00000592705 GTF2E1P29083 439 aaPredicted RBP16.12■□□□□ 0.17
DNMT1-228ENST00000592705 RWDD1Q9H446 243 aaPredicted RBP16.12■□□□□ 0.17
DNMT1-228ENST00000592705 IPO8O15397 1037 aaKnown RBP16.12■□□□□ 0.17
DNMT1-228ENST00000592705 CDK11BP21127 795 aaKnown RBP16.12■□□□□ 0.17
DNMT1-228ENST00000592705 SF3B2Q13435 895 aaKnown RBP16.12■□□□□ 0.17
DNMT1-228ENST00000592705 GRIN2BQ13224 1484 aa16.11■□□□□ 0.17
DNMT1-228ENST00000592705 ERICH3Q5RHP9 1530 aa16.11■□□□□ 0.17
DNMT1-228ENST00000592705 PMFBP1Q8TBY8 1022 aa16.1■□□□□ 0.17
DNMT1-228ENST00000592705 FGD6Q6ZV73 1430 aa16.1■□□□□ 0.17
DNMT1-228ENST00000592705 LRRC9Q6ZRR7 1453 aa16.1■□□□□ 0.17
DNMT1-228ENST00000592705 FGD5Q6ZNL6 1462 aa16.09■□□□□ 0.17
DNMT1-228ENST00000592705 CUX1P39880 1505 aa16.09■□□□□ 0.17
DNMT1-228ENST00000592705 UACAQ9BZF9 1416 aa16.08■□□□□ 0.17
DNMT1-228ENST00000592705 FANCIQ9NVI1 1328 aa16.08■□□□□ 0.17
DNMT1-228ENST00000592705 RRBP1Q9P2E9 1410 aaKnown RBP16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms