RNA–Protein interactions for RNA: ENST00000592445.1

PRKCSH-216, Transcript of protein kinase C substrate 80K-H, human

TSL 2

Gene PRKCSH, Length 598 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCSH-216	ENST00000592445	PLCH2	O75038	1416 aa		32.77	■■■□□ 2.84
PRKCSH-216	ENST00000592445	ATP1B4	Q9UN42	357 aa	Predicted RBP	32.76	■■■□□ 2.83
PRKCSH-216	ENST00000592445	FER1L4	A9Z1Z3	1794 aa		32.73	■■■□□ 2.83
PRKCSH-216	ENST00000592445	EFCAB2	Q5VUJ9	269 aa		32.7	■■■□□ 2.83
PRKCSH-216	ENST00000592445	CERK	Q8TCT0	537 aa		32.7	■■■□□ 2.83
PRKCSH-216	ENST00000592445	ATP10A	O60312	1499 aa		32.68	■■■□□ 2.82
PRKCSH-216	ENST00000592445	C9orf84	Q5VXU9	1444 aa		32.67	■■■□□ 2.82
PRKCSH-216	ENST00000592445	EHMT2	Q96KQ7	1210 aa		32.66	■■■□□ 2.82
PRKCSH-216	ENST00000592445	CDK11A	Q9UQ88	783 aa	Predicted RBP	32.66	■■■□□ 2.82
PRKCSH-216	ENST00000592445	UBTF	P17480	764 aa	Known RBP	32.64	■■■□□ 2.82
PRKCSH-216	ENST00000592445	FMN1	Q68DA7	1419 aa		32.63	■■■□□ 2.81
PRKCSH-216	ENST00000592445	ARHGEF12	Q9NZN5	1544 aa		32.62	■■■□□ 2.81
PRKCSH-216	ENST00000592445	MYO5C	Q9NQX4	1742 aa		32.62	■■■□□ 2.81
PRKCSH-216	ENST00000592445	CEBPA	P49715	358 aa	Predicted RBP	32.59	■■■□□ 2.81
PRKCSH-216	ENST00000592445	MYT1L	Q9UL68	1186 aa		32.58	■■■□□ 2.81
PRKCSH-216	ENST00000592445	ZNF518A	Q6AHZ1	1483 aa		32.55	■■■□□ 2.8
PRKCSH-216	ENST00000592445	PREX1	Q8TCU6	1659 aa		32.55	■■■□□ 2.8
PRKCSH-216	ENST00000592445	AFAP1	Q8N556	730 aa		32.54	■■■□□ 2.8
PRKCSH-216	ENST00000592445	KIF14	Q15058	1648 aa		32.54	■■■□□ 2.8
PRKCSH-216	ENST00000592445	ARHGAP5	Q13017	1502 aa		32.53	■■■□□ 2.8
PRKCSH-216	ENST00000592445	ARHGAP35	Q9NRY4	1499 aa		32.51	■■■□□ 2.79
PRKCSH-216	ENST00000592445	TRO	Q12816	1431 aa	Predicted RBP	32.51	■■■□□ 2.79
PRKCSH-216	ENST00000592445	DMRT2	Q9Y5R5	561 aa		32.49	■■■□□ 2.79
PRKCSH-216	ENST00000592445	CLIP1	P30622	1438 aa		32.49	■■■□□ 2.79
PRKCSH-216	ENST00000592445	KDM5C	P41229	1560 aa		32.45	■■■□□ 2.79
PRKCSH-216	ENST00000592445	UHRF1BP1	Q6BDS2	1440 aa		32.45	■■■□□ 2.79
PRKCSH-216	ENST00000592445	ESF1	Q9H501	851 aa	Known RBP	32.4	■■■□□ 2.78
PRKCSH-216	ENST00000592445	DIP2C	Q9Y2E4	1556 aa		32.4	■■■□□ 2.78
PRKCSH-216	ENST00000592445	STRC	Q7RTU9	1775 aa		32.38	■■■□□ 2.77
PRKCSH-216	ENST00000592445	RERE	Q9P2R6	1566 aa		32.35	■■■□□ 2.77
PRKCSH-216	ENST00000592445	MLH3	Q9UHC1	1453 aa		32.35	■■■□□ 2.77
PRKCSH-216	ENST00000592445	SETD1B	Q9UPS6	1966 aa	Known RBP	32.34	■■■□□ 2.77
PRKCSH-216	ENST00000592445	ABCA6	Q8N139	1617 aa		32.33	■■■□□ 2.77
PRKCSH-216	ENST00000592445	CDC42BPB	Q9Y5S2	1711 aa		32.32	■■■□□ 2.76
PRKCSH-216	ENST00000592445	LRRIQ1	Q96JM4	1722 aa		32.31	■■■□□ 2.76
PRKCSH-216	ENST00000592445	TRAPPC8	Q9Y2L5	1435 aa		32.3	■■■□□ 2.76
PRKCSH-216	ENST00000592445	DISP3	Q9P2K9	1392 aa		32.3	■■■□□ 2.76
PRKCSH-216	ENST00000592445	C3	P01024	1663 aa		32.28	■■■□□ 2.76
PRKCSH-216	ENST00000592445	ABCC1	P33527	1531 aa		32.27	■■■□□ 2.76
PRKCSH-216	ENST00000592445	AGL	P35573	1532 aa		32.26	■■■□□ 2.76
PRKCSH-216	ENST00000592445	PREX2	Q70Z35	1606 aa		32.26	■■■□□ 2.76
PRKCSH-216	ENST00000592445	PTPRT	O14522	1441 aa		32.26	■■■□□ 2.75
PRKCSH-216	ENST00000592445	CCDC18	Q5T9S5	1454 aa		32.23	■■■□□ 2.75
PRKCSH-216	ENST00000592445	ITSN2	Q9NZM3	1697 aa		32.22	■■■□□ 2.75
PRKCSH-216	ENST00000592445	CASKIN1	Q8WXD9	1431 aa		32.21	■■■□□ 2.75
PRKCSH-216	ENST00000592445	CNTLN	Q9NXG0	1405 aa		32.19	■■■□□ 2.74
PRKCSH-216	ENST00000592445	ILDR2	Q71H61	639 aa		32.17	■■■□□ 2.74
PRKCSH-216	ENST00000592445	ZNF777	Q9ULD5	760 aa	Predicted RBP	32.16	■■■□□ 2.74
PRKCSH-216	ENST00000592445	KIDINS220	Q9ULH0	1771 aa		32.16	■■■□□ 2.74
PRKCSH-216	ENST00000592445	CHIC1	Q5VXU3	224 aa		32.15	■■■□□ 2.74
PRKCSH-216	ENST00000592445	NCOA1	Q15788	1441 aa		32.12	■■■□□ 2.73
PRKCSH-216	ENST00000592445	CDC42BPA	Q5VT25	1732 aa		32.12	■■■□□ 2.73
PRKCSH-216	ENST00000592445	LTBP4	Q8N2S1	1624 aa		32.08	■■■□□ 2.73
PRKCSH-216	ENST00000592445	SPAG9	O60271	1321 aa	Known RBP	32.08	■■■□□ 2.73
PRKCSH-216	ENST00000592445	SAMD9L	Q8IVG5	1584 aa		32.08	■■■□□ 2.73
PRKCSH-216	ENST00000592445	SOCS7	O14512	581 aa		32.08	■■■□□ 2.73
PRKCSH-216	ENST00000592445	NPAT	Q14207	1427 aa		32.06	■■■□□ 2.72
PRKCSH-216	ENST00000592445	ZMYM3	Q14202	1370 aa		32.06	■■■□□ 2.72
PRKCSH-216	ENST00000592445	HNRNPM	P52272	730 aa	Known RBP eCLIP	32.04	■■■□□ 2.72
PRKCSH-216	ENST00000592445	SYCP2	Q9BX26	1530 aa		32.04	■■■□□ 2.72
PRKCSH-216	ENST00000592445	CAMSAP1	Q5T5Y3	1602 aa		32.04	■■■□□ 2.72
PRKCSH-216	ENST00000592445	IQSEC2	Q5JU85	1478 aa		32.03	■■■□□ 2.72
PRKCSH-216	ENST00000592445	FYCO1	Q9BQS8	1478 aa		32.03	■■■□□ 2.72
PRKCSH-216	ENST00000592445	SPATA31D1	Q6ZQQ2	1576 aa		32.02	■■■□□ 2.72
PRKCSH-216	ENST00000592445	MROH2A	A6NES4	1674 aa		32.02	■■■□□ 2.72
PRKCSH-216	ENST00000592445	GPATCH8	Q9UKJ3	1502 aa	Known RBP	32	■■■□□ 2.71
PRKCSH-216	ENST00000592445	SUPT6H	Q7KZ85	1726 aa	Known RBP	31.99	■■■□□ 2.71
PRKCSH-216	ENST00000592445	NCKAP5L	Q9HCH0	1330 aa		31.99	■■■□□ 2.71
PRKCSH-216	ENST00000592445	CFDP1	Q9UEE9	299 aa	Predicted RBP	31.97	■■■□□ 2.71
PRKCSH-216	ENST00000592445	ATP7A	Q04656	1500 aa		31.95	■■■□□ 2.71
PRKCSH-216	ENST00000592445	KIAA1107	Q9UPP5	1409 aa		31.93	■■■□□ 2.7
PRKCSH-216	ENST00000592445	CLTC	Q00610	1675 aa	Known RBP	31.92	■■■□□ 2.7
PRKCSH-216	ENST00000592445	A2M	P01023	1474 aa		31.92	■■■□□ 2.7
PRKCSH-216	ENST00000592445	PLEKHH2	Q8IVE3	1493 aa		31.92	■■■□□ 2.7
PRKCSH-216	ENST00000592445	GGT6	Q6P531	493 aa		31.92	■■■□□ 2.7
PRKCSH-216	ENST00000592445	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	31.92	■■■□□ 2.7
PRKCSH-216	ENST00000592445	CCNB3	Q8WWL7	1395 aa		31.91	■■■□□ 2.7
PRKCSH-216	ENST00000592445	PKD2	Q13563	968 aa		31.9	■■■□□ 2.7
PRKCSH-216	ENST00000592445	UBAP1L	F5GYI3	381 aa		31.88	■■■□□ 2.69
PRKCSH-216	ENST00000592445	PLXNC1	O60486	1568 aa		31.88	■■■□□ 2.69
PRKCSH-216	ENST00000592445	INO80	Q9ULG1	1556 aa	Predicted RBP	31.88	■■■□□ 2.69
PRKCSH-216	ENST00000592445	MYO3A	Q8NEV4	1616 aa		31.87	■■■□□ 2.69
PRKCSH-216	ENST00000592445	PTPRK	Q15262	1439 aa		31.86	■■■□□ 2.69
PRKCSH-216	ENST00000592445	PLA2R1	Q13018	1463 aa		31.85	■■■□□ 2.69
PRKCSH-216	ENST00000592445	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	31.84	■■■□□ 2.69
PRKCSH-216	ENST00000592445	ZNF142	P52746	1687 aa	Predicted RBP	31.83	■■■□□ 2.69
PRKCSH-216	ENST00000592445	MTUS2	Q5JR59	1369 aa		31.82	■■■□□ 2.69
PRKCSH-216	ENST00000592445	PPP6R1	Q9UPN7	881 aa		31.81	■■■□□ 2.68
PRKCSH-216	ENST00000592445	TCOF1	Q13428	1488 aa	Known RBP	31.79	■■■□□ 2.68
PRKCSH-216	ENST00000592445	ADGB	Q8N7X0	1667 aa		31.76	■■■□□ 2.67
PRKCSH-216	ENST00000592445	ZNF644	Q9H582	1327 aa	Predicted RBP	31.75	■■■□□ 2.67
PRKCSH-216	ENST00000592445	A2ML1	A8K2U0	1454 aa		31.71	■■■□□ 2.67
PRKCSH-216	ENST00000592445	MBD5	Q9P267	1494 aa		31.67	■■■□□ 2.66
PRKCSH-216	ENST00000592445	TIAM1	Q13009	1591 aa		31.67	■■■□□ 2.66
PRKCSH-216	ENST00000592445	DHX29	Q7Z478	1369 aa	Known RBP	31.66	■■■□□ 2.66
PRKCSH-216	ENST00000592445	RTEL1-TNFRSF6B	F6WH68	1400 aa		31.66	■■■□□ 2.66
PRKCSH-216	ENST00000592445	DNMT1	P26358	1616 aa	Known RBP	31.65	■■■□□ 2.66
PRKCSH-216	ENST00000592445	SCAF1	Q9H7N4	1312 aa	Known RBP	31.65	■■■□□ 2.66
PRKCSH-216	ENST00000592445	KIF3B	O15066	747 aa		31.63	■■■□□ 2.65
PRKCSH-216	ENST00000592445	EHBP1L1	Q8N3D4	1523 aa		31.62	■■■□□ 2.65

Retrieved 100 of 20,778 RNA–protein pairs in 124.4 ms