RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	DAPK1	P53355	1430 aa		22.77	■■□□□ 1.24
DDX39A-209	ENST00000589318	NAIP	Q13075	1403 aa		22.77	■■□□□ 1.24
DDX39A-209	ENST00000589318	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	22.77	■■□□□ 1.24	4e-7	■■□□□ 11.9
DDX39A-209	ENST00000589318	CDC42BPB	Q9Y5S2	1711 aa		22.77	■■□□□ 1.24
DDX39A-209	ENST00000589318	PREX2	Q70Z35	1606 aa		22.77	■■□□□ 1.24
DDX39A-209	ENST00000589318	ABCC5	O15440	1437 aa		22.76	■■□□□ 1.23
DDX39A-209	ENST00000589318	GCC2	Q8IWJ2	1684 aa		22.76	■■□□□ 1.23
DDX39A-209	ENST00000589318	AKNA	Q7Z591	1439 aa		22.75	■■□□□ 1.23
DDX39A-209	ENST00000589318	CLSPN	Q9HAW4	1339 aa		22.73	■■□□□ 1.23
DDX39A-209	ENST00000589318	CROCC2	H7BZ55	1655 aa		22.72	■■□□□ 1.23
DDX39A-209	ENST00000589318	CHIC2	Q9UKJ5	165 aa		22.69	■■□□□ 1.22
DDX39A-209	ENST00000589318	MYO5C	Q9NQX4	1742 aa		22.69	■■□□□ 1.22
DDX39A-209	ENST00000589318	MAPKBP1	O60336	1514 aa		22.68	■■□□□ 1.22
DDX39A-209	ENST00000589318	ROCK1	Q13464	1354 aa		22.68	■■□□□ 1.22
DDX39A-209	ENST00000589318	SAMD9L	Q8IVG5	1584 aa		22.68	■■□□□ 1.22
DDX39A-209	ENST00000589318	ZNF777	Q9ULD5	760 aa	Predicted RBP	22.67	■■□□□ 1.22
DDX39A-209	ENST00000589318	ACIN1	Q9UKV3	1341 aa	Known RBP	22.66	■■□□□ 1.22
DDX39A-209	ENST00000589318	WDR7	Q9Y4E6	1490 aa		22.66	■■□□□ 1.22
DDX39A-209	ENST00000589318	KDM6B	O15054	1643 aa		22.65	■■□□□ 1.22
DDX39A-209	ENST00000589318	RRP7BP	Q9NSQ0	103 aa		22.65	■■□□□ 1.22
DDX39A-209	ENST00000589318	ADGB	Q8N7X0	1667 aa		22.65	■■□□□ 1.22
DDX39A-209	ENST00000589318	KCNH8	Q96L42	1107 aa		22.63	■■□□□ 1.21
DDX39A-209	ENST00000589318	ARHGEF5	Q12774	1597 aa		22.63	■■□□□ 1.21
DDX39A-209	ENST00000589318	MBD5	Q9P267	1494 aa		22.62	■■□□□ 1.21
DDX39A-209	ENST00000589318	ADGRL2	O95490	1459 aa		22.61	■■□□□ 1.21
DDX39A-209	ENST00000589318	ARHGAP5	Q13017	1502 aa		22.61	■■□□□ 1.21
DDX39A-209	ENST00000589318	SHANK2	Q9UPX8	1470 aa		22.6	■■□□□ 1.21
DDX39A-209	ENST00000589318	PLCH2	O75038	1416 aa		22.59	■■□□□ 1.21
DDX39A-209	ENST00000589318	ASXL2	Q76L83	1435 aa		22.59	■■□□□ 1.21
DDX39A-209	ENST00000589318	NCOA1	Q15788	1441 aa		22.58	■■□□□ 1.21
DDX39A-209	ENST00000589318	RIMBP3C	A6NJZ7	1639 aa		22.56	■■□□□ 1.2
DDX39A-209	ENST00000589318	RIMBP3B	A6NNM3	1639 aa		22.56	■■□□□ 1.2
DDX39A-209	ENST00000589318	ABCA9	Q8IUA7	1624 aa		22.56	■■□□□ 1.2
DDX39A-209	ENST00000589318	RIMBP3	Q9UFD9	1639 aa		22.56	■■□□□ 1.2
DDX39A-209	ENST00000589318	ARAP3	Q8WWN8	1544 aa		22.55	■■□□□ 1.2
DDX39A-209	ENST00000589318	SYCP2	Q9BX26	1530 aa		22.55	■■□□□ 1.2
DDX39A-209	ENST00000589318	HNRNPM	P52272	730 aa	Known RBP eCLIP	22.53	■■□□□ 1.2	5e-8	■■■■□ 23.8
DDX39A-209	ENST00000589318	C9orf84	Q5VXU9	1444 aa		22.53	■■□□□ 1.2
DDX39A-209	ENST00000589318	CCDC141	Q6ZP82	1450 aa		22.53	■■□□□ 1.2
DDX39A-209	ENST00000589318	KIAA1107	Q9UPP5	1409 aa		22.51	■■□□□ 1.19
DDX39A-209	ENST00000589318	CENPB	P07199	599 aa	Predicted RBP	22.51	■■□□□ 1.19
DDX39A-209	ENST00000589318	PLEKHH2	Q8IVE3	1493 aa		22.51	■■□□□ 1.19
DDX39A-209	ENST00000589318	ARHGEF12	Q9NZN5	1544 aa		22.5	■■□□□ 1.19
DDX39A-209	ENST00000589318	ANKRD30A	Q9BXX3	1397 aa		22.5	■■□□□ 1.19
DDX39A-209	ENST00000589318	ABCC1	P33527	1531 aa		22.49	■■□□□ 1.19
DDX39A-209	ENST00000589318	DENND4B	O75064	1496 aa	Predicted RBP	22.48	■■□□□ 1.19
DDX39A-209	ENST00000589318	MAST1	Q9Y2H9	1570 aa		22.48	■■□□□ 1.19
DDX39A-209	ENST00000589318	NPM1	P06748	294 aa	Known RBP eCLIP	22.47	■■□□□ 1.19
DDX39A-209	ENST00000589318	RSPH4A	Q5TD94	716 aa		22.47	■■□□□ 1.19
DDX39A-209	ENST00000589318	EFCAB2	Q5VUJ9	269 aa		22.46	■■□□□ 1.19
DDX39A-209	ENST00000589318	TSPY4	P0CV99	314 aa		22.44	■■□□□ 1.18
DDX39A-209	ENST00000589318	TSPY10	P0CW01	314 aa		22.44	■■□□□ 1.18
DDX39A-209	ENST00000589318	CYB5RL	Q6IPT4	315 aa		22.41	■■□□□ 1.18
DDX39A-209	ENST00000589318	ANKRD50	Q9ULJ7	1429 aa		22.41	■■□□□ 1.18
DDX39A-209	ENST00000589318	FANCA	O15360	1455 aa		22.4	■■□□□ 1.18
DDX39A-209	ENST00000589318	SIN3A	Q96ST3	1273 aa		22.39	■■□□□ 1.18
DDX39A-209	ENST00000589318	KIF15	Q9NS87	1388 aa		22.39	■■□□□ 1.18
DDX39A-209	ENST00000589318	PLXNC1	O60486	1568 aa		22.39	■■□□□ 1.17
DDX39A-209	ENST00000589318	TRIM52	Q96A61	297 aa		22.39	■■□□□ 1.17
DDX39A-209	ENST00000589318	TRAPPC8	Q9Y2L5	1435 aa		22.38	■■□□□ 1.17
DDX39A-209	ENST00000589318	NEUROD1	Q13562	356 aa		22.37	■■□□□ 1.17
DDX39A-209	ENST00000589318	PZP	P20742	1482 aa		22.36	■■□□□ 1.17
DDX39A-209	ENST00000589318	MPHOSPH9	Q99550	1183 aa		22.35	■■□□□ 1.17
DDX39A-209	ENST00000589318	GTF3C3	Q9Y5Q9	886 aa		22.31	■■□□□ 1.16
DDX39A-209	ENST00000589318	CD109	Q6YHK3	1445 aa		22.31	■■□□□ 1.16
DDX39A-209	ENST00000589318	ADGRL1	O94910	1474 aa		22.3	■■□□□ 1.16
DDX39A-209	ENST00000589318	KDM5D	Q9BY66	1539 aa		22.3	■■□□□ 1.16
DDX39A-209	ENST00000589318	ZFYVE16	Q7Z3T8	1539 aa		22.29	■■□□□ 1.16
DDX39A-209	ENST00000589318	CFAP74	Q9C0B2	1584 aa		22.28	■■□□□ 1.16
DDX39A-209	ENST00000589318	TIMELESS	Q9UNS1	1208 aa		22.27	■■□□□ 1.16
DDX39A-209	ENST00000589318	RTEL1-TNFRSF6B	F6WH68	1400 aa		22.26	■■□□□ 1.15
DDX39A-209	ENST00000589318	SCAPER	Q9BY12	1400 aa		22.26	■■□□□ 1.15
DDX39A-209	ENST00000589318	INO80	Q9ULG1	1556 aa	Predicted RBP	22.26	■■□□□ 1.15
DDX39A-209	ENST00000589318	DUOX2	Q9NRD8	1548 aa		22.26	■■□□□ 1.15
DDX39A-209	ENST00000589318	MAP3K4	Q9Y6R4	1608 aa		22.26	■■□□□ 1.15
DDX39A-209	ENST00000589318	AFAP1	Q8N556	730 aa		22.25	■■□□□ 1.15
DDX39A-209	ENST00000589318	SLC4A1AP	Q9BWU0	796 aa	Known RBP	22.25	■■□□□ 1.15
DDX39A-209	ENST00000589318	GLI2	P10070	1586 aa		22.25	■■□□□ 1.15
DDX39A-209	ENST00000589318	UNC13B	O14795	1591 aa		22.24	■■□□□ 1.15
DDX39A-209	ENST00000589318	ANKRD30B	Q9BXX2	1392 aa		22.24	■■□□□ 1.15
DDX39A-209	ENST00000589318	FOXD1	Q16676	465 aa		22.23	■■□□□ 1.15
DDX39A-209	ENST00000589318	SPAG9	O60271	1321 aa	Known RBP	22.22	■■□□□ 1.15
DDX39A-209	ENST00000589318	ATP7A	Q04656	1500 aa		22.22	■■□□□ 1.15
DDX39A-209	ENST00000589318	ERBIN	Q96RT1	1412 aa		22.21	■■□□□ 1.15
DDX39A-209	ENST00000589318	NUP155	O75694	1391 aa		22.21	■■□□□ 1.15
DDX39A-209	ENST00000589318	DIP2B	Q9P265	1576 aa		22.2	■■□□□ 1.14
DDX39A-209	ENST00000589318	ZNF316	A6NFI3	1004 aa	Predicted RBP	22.19	■■□□□ 1.14
DDX39A-209	ENST00000589318	NEO1	Q92859	1461 aa		22.18	■■□□□ 1.14
DDX39A-209	ENST00000589318	MAGI2	Q86UL8	1455 aa		22.17	■■□□□ 1.14
DDX39A-209	ENST00000589318	KIDINS220	Q9ULH0	1771 aa		22.17	■■□□□ 1.14
DDX39A-209	ENST00000589318	ZNF518A	Q6AHZ1	1483 aa		22.17	■■□□□ 1.14
DDX39A-209	ENST00000589318	FAM135A	Q9P2D6	1515 aa		22.17	■■□□□ 1.14
DDX39A-209	ENST00000589318	KDM5C	P41229	1560 aa		22.17	■■□□□ 1.14
DDX39A-209	ENST00000589318	TONSL	Q96HA7	1378 aa		22.17	■■□□□ 1.14
DDX39A-209	ENST00000589318	PPP1R15A	O75807	674 aa	Predicted RBP	22.16	■■□□□ 1.14
DDX39A-209	ENST00000589318	POGZ	Q7Z3K3	1410 aa		22.15	■■□□□ 1.14
DDX39A-209	ENST00000589318	IQGAP3	Q86VI3	1631 aa		22.15	■■□□□ 1.14
DDX39A-209	ENST00000589318	RPRD2	Q5VT52	1461 aa	Known RBP	22.15	■■□□□ 1.14
DDX39A-209	ENST00000589318	PKD2	Q13563	968 aa		22.14	■■□□□ 1.14
DDX39A-209	ENST00000589318	DIEXF	Q68CQ4	756 aa	Known RBP	22.13	■■□□□ 1.13

Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms