RNA–Protein interactions for RNA: ENST00000589007.5

RETREG3-207, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 3

Gene RETREG3, Length 571 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-207ENST00000589007 KDM5CP41229 1560 aa14.81□□□□□ -0.04
RETREG3-207ENST00000589007 REREQ9P2R6 1566 aa14.8□□□□□ -0.04
RETREG3-207ENST00000589007 PTPRTO14522 1441 aa14.79□□□□□ -0.04
RETREG3-207ENST00000589007 SETD1BQ9UPS6 1966 aaKnown RBP14.79□□□□□ -0.04
RETREG3-207ENST00000589007 DIP2CQ9Y2E4 1556 aa14.79□□□□□ -0.04
RETREG3-207ENST00000589007 ABCA6Q8N139 1617 aa14.77□□□□□ -0.04
RETREG3-207ENST00000589007 C9orf84Q5VXU9 1444 aa14.77□□□□□ -0.04
RETREG3-207ENST00000589007 MYO5CQ9NQX4 1742 aa14.77□□□□□ -0.05
RETREG3-207ENST00000589007 ATP10AO60312 1499 aa14.75□□□□□ -0.05
RETREG3-207ENST00000589007 CDK13Q14004 1512 aaKnown RBP14.74□□□□□ -0.05
RETREG3-207ENST00000589007 P3H3Q8IVL6 736 aa14.73□□□□□ -0.05
RETREG3-207ENST00000589007 NCOA1Q15788 1441 aa14.73□□□□□ -0.05
RETREG3-207ENST00000589007 UHRF1BP1Q6BDS2 1440 aa14.73□□□□□ -0.05
RETREG3-207ENST00000589007 KIF14Q15058 1648 aa14.73□□□□□ -0.05
RETREG3-207ENST00000589007 PLPPR3Q6T4P5 718 aa14.72□□□□□ -0.05
RETREG3-207ENST00000589007 LRRIQ1Q96JM4 1722 aa14.72□□□□□ -0.05
RETREG3-207ENST00000589007 ZNF142P52746 1687 aaPredicted RBP14.71□□□□□ -0.05
RETREG3-207ENST00000589007 CEBPAP49715 358 aaPredicted RBP14.71□□□□□ -0.05
RETREG3-207ENST00000589007 PLCH2O75038 1416 aa14.7□□□□□ -0.06
RETREG3-207ENST00000589007 MED1Q15648 1581 aaPredicted RBP14.69□□□□□ -0.06
RETREG3-207ENST00000589007 SCAPERQ9BY12 1400 aa14.69□□□□□ -0.06
RETREG3-207ENST00000589007 MROH2AA6NES4 1674 aa14.68□□□□□ -0.06
RETREG3-207ENST00000589007 MLECQ14165 292 aa14.68□□□□□ -0.06
RETREG3-207ENST00000589007 AGLP35573 1532 aa14.67□□□□□ -0.06
RETREG3-207ENST00000589007 CDC42BPBQ9Y5S2 1711 aa14.67□□□□□ -0.06
RETREG3-207ENST00000589007 KIDINS220Q9ULH0 1771 aa14.65□□□□□ -0.06
RETREG3-207ENST00000589007 ITSN2Q9NZM3 1697 aa14.65□□□□□ -0.06
RETREG3-207ENST00000589007 CAMSAP1Q5T5Y3 1602 aa14.65□□□□□ -0.06
RETREG3-207ENST00000589007 MYO3AQ8NEV4 1616 aa14.65□□□□□ -0.06
RETREG3-207ENST00000589007 ALKQ9UM73 1620 aa14.65□□□□□ -0.06
RETREG3-207ENST00000589007 ZNF518AQ6AHZ1 1483 aa14.63□□□□□ -0.07
RETREG3-207ENST00000589007 ABCC1P33527 1531 aa14.61□□□□□ -0.07
RETREG3-207ENST00000589007 DMRT2Q9Y5R5 561 aa14.61□□□□□ -0.07
RETREG3-207ENST00000589007 PREX2Q70Z35 1606 aa14.6□□□□□ -0.07
RETREG3-207ENST00000589007 MLH3Q9UHC1 1453 aa14.6□□□□□ -0.07
RETREG3-207ENST00000589007 TCOF1Q13428 1488 aaKnown RBP14.59□□□□□ -0.07
RETREG3-207ENST00000589007 SUPT6HQ7KZ85 1726 aaKnown RBP14.59□□□□□ -0.07
RETREG3-207ENST00000589007 TRAPPC8Q9Y2L5 1435 aa14.58□□□□□ -0.07
RETREG3-207ENST00000589007 PLA2R1Q13018 1463 aa14.56□□□□□ -0.08
RETREG3-207ENST00000589007 NEURL4Q96JN8 1562 aa14.56□□□□□ -0.08
RETREG3-207ENST00000589007 CEP170BQ9Y4F5 1589 aaPredicted RBP14.56□□□□□ -0.08
RETREG3-207ENST00000589007 PLEKHD1A6NEE1 506 aa14.55□□□□□ -0.08
RETREG3-207ENST00000589007 ZNF335Q9H4Z2 1342 aaPredicted RBP14.55□□□□□ -0.08
RETREG3-207ENST00000589007 PLXNC1O60486 1568 aa14.55□□□□□ -0.08
RETREG3-207ENST00000589007 CLTCQ00610 1675 aaKnown RBP14.55□□□□□ -0.08
RETREG3-207ENST00000589007 CDC42BPAQ5VT25 1732 aa14.55□□□□□ -0.08
RETREG3-207ENST00000589007 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.54□□□□□ -0.08
RETREG3-207ENST00000589007 HNRNPUL2Q1KMD3 747 aaKnown RBP14.54□□□□□ -0.08
RETREG3-207ENST00000589007 NPATQ14207 1427 aa14.54□□□□□ -0.08
RETREG3-207ENST00000589007 POLR1AO95602 1720 aaPredicted RBP14.54□□□□□ -0.08
RETREG3-207ENST00000589007 ARHGAP5Q13017 1502 aa14.53□□□□□ -0.08
RETREG3-207ENST00000589007 AFAP1Q8N556 730 aa14.5□□□□□ -0.09
RETREG3-207ENST00000589007 SAMD9LQ8IVG5 1584 aa14.5□□□□□ -0.09
RETREG3-207ENST00000589007 CNTLNQ9NXG0 1405 aa14.49□□□□□ -0.09
RETREG3-207ENST00000589007 INO80Q9ULG1 1556 aaPredicted RBP14.49□□□□□ -0.09
RETREG3-207ENST00000589007 TROQ12816 1431 aaPredicted RBP14.49□□□□□ -0.09
RETREG3-207ENST00000589007 DNMT1P26358 1616 aaKnown RBP14.48□□□□□ -0.09
RETREG3-207ENST00000589007 STRCP1A6NGW2 1772 aa14.47□□□□□ -0.09
RETREG3-207ENST00000589007 VWDEQ8N2E2 1590 aa14.47□□□□□ -0.09
RETREG3-207ENST00000589007 PTPRKQ15262 1439 aa14.46□□□□□ -0.09
RETREG3-207ENST00000589007 ARHGAP35Q9NRY4 1499 aa14.45□□□□□ -0.1
RETREG3-207ENST00000589007 NCKAP5LQ9HCH0 1330 aa14.44□□□□□ -0.1
RETREG3-207ENST00000589007 EFCAB2Q5VUJ9 269 aa14.44□□□□□ -0.1
RETREG3-207ENST00000589007 UBAP1LF5GYI3 381 aa14.43□□□□□ -0.1
RETREG3-207ENST00000589007 CSRNP3Q8WYN3 585 aa14.43□□□□□ -0.1
RETREG3-207ENST00000589007 HSPA1LP34931 641 aa14.42□□□□□ -0.1
RETREG3-207ENST00000589007 CPS1P31327 1500 aa14.41□□□□□ -0.1
RETREG3-207ENST00000589007 SYCP2Q9BX26 1530 aa14.41□□□□□ -0.1
RETREG3-207ENST00000589007 ZMYM3Q14202 1370 aa14.4□□□□□ -0.1
RETREG3-207ENST00000589007 FAM9AQ8IZU1 332 aaPredicted RBP14.4□□□□□ -0.1
RETREG3-207ENST00000589007 ATP7AQ04656 1500 aa14.39□□□□□ -0.11
RETREG3-207ENST00000589007 EEA1Q15075 1411 aa14.38□□□□□ -0.11
RETREG3-207ENST00000589007 XIRP1Q702N8 1843 aaKnown RBP14.38□□□□□ -0.11
RETREG3-207ENST00000589007 A2ML1A8K2U0 1454 aa14.38□□□□□ -0.11
RETREG3-207ENST00000589007 ADGBQ8N7X0 1667 aa14.37□□□□□ -0.11
RETREG3-207ENST00000589007 FMN1Q68DA7 1419 aa14.37□□□□□ -0.11
RETREG3-207ENST00000589007 RANGAP1P46060 587 aaPredicted RBP14.36□□□□□ -0.11
RETREG3-207ENST00000589007 RNF17Q9BXT8 1623 aaKnown RBP14.36□□□□□ -0.11
RETREG3-207ENST00000589007 SHANK2Q9UPX8 1470 aa14.36□□□□□ -0.11
RETREG3-207ENST00000589007 DEPDC5O75140 1603 aa14.35□□□□□ -0.11
RETREG3-207ENST00000589007 ZC3H13Q5T200 1668 aaKnown RBP14.35□□□□□ -0.11
RETREG3-207ENST00000589007 PKD2Q13563 968 aa14.34□□□□□ -0.11
RETREG3-207ENST00000589007 SYNMO15061 1565 aa14.34□□□□□ -0.11
RETREG3-207ENST00000589007 SETD1AO15047 1707 aaKnown RBP14.33□□□□□ -0.12
RETREG3-207ENST00000589007 CLIP1P30622 1438 aa14.32□□□□□ -0.12
RETREG3-207ENST00000589007 IQGAP1P46940 1657 aa14.31□□□□□ -0.12
RETREG3-207ENST00000589007 RGS17Q9UGC6 210 aaPredicted RBP14.31□□□□□ -0.12
RETREG3-207ENST00000589007 MED14O60244 1454 aa14.31□□□□□ -0.12
RETREG3-207ENST00000589007 A2MP01023 1474 aa14.31□□□□□ -0.12
RETREG3-207ENST00000589007 PPP6R1Q9UPN7 881 aa14.29□□□□□ -0.12
RETREG3-207ENST00000589007 GPATCH8Q9UKJ3 1502 aaKnown RBP14.28□□□□□ -0.12
RETREG3-207ENST00000589007 LRRC7Q96NW7 1537 aa14.27□□□□□ -0.12
RETREG3-207ENST00000589007 CCDC18Q5T9S5 1454 aa14.26□□□□□ -0.13
RETREG3-207ENST00000589007 PIP4K2BP78356 416 aa14.25□□□□□ -0.13
RETREG3-207ENST00000589007 FAM135AQ9P2D6 1515 aa14.25□□□□□ -0.13
RETREG3-207ENST00000589007 PZPP20742 1482 aa14.25□□□□□ -0.13
RETREG3-207ENST00000589007 CASKIN1Q8WXD9 1431 aa14.24□□□□□ -0.13
RETREG3-207ENST00000589007 KDM5DQ9BY66 1539 aa14.23□□□□□ -0.13
RETREG3-207ENST00000589007 KIAA1107Q9UPP5 1409 aa14.23□□□□□ -0.13
RETREG3-207ENST00000589007 ESF1Q9H501 851 aaKnown RBP14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms