RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 PTPRTO14522 1441 aa7.36□□□□□ -1.23
LIG3-211ENST00000588713 ZCCHC11Q5TAX3 1644 aaKnown RBP7.35□□□□□ -1.23
LIG3-211ENST00000588713 KDM5BQ9UGL1 1544 aa7.35□□□□□ -1.23
LIG3-211ENST00000588713 ARAP3Q8WWN8 1544 aa7.34□□□□□ -1.23
LIG3-211ENST00000588713 PREX1Q8TCU6 1659 aa7.34□□□□□ -1.23
LIG3-211ENST00000588713 WRNQ14191 1432 aaPredicted RBP eCLIP7.34□□□□□ -1.23
LIG3-211ENST00000588713 CHRDL2Q6WN34 429 aa7.33□□□□□ -1.24
LIG3-211ENST00000588713 RGS17Q9UGC6 210 aaPredicted RBP7.33□□□□□ -1.24
LIG3-211ENST00000588713 ZBTB12Q9Y330 459 aaPredicted RBP7.33□□□□□ -1.24
LIG3-211ENST00000588713 CARMIL2Q6F5E8 1435 aa7.33□□□□□ -1.24
LIG3-211ENST00000588713 ZNF335Q9H4Z2 1342 aaPredicted RBP7.32□□□□□ -1.24
LIG3-211ENST00000588713 CEBPAP49715 358 aaPredicted RBP7.32□□□□□ -1.24
LIG3-211ENST00000588713 UHRF1BP1Q6BDS2 1440 aa7.32□□□□□ -1.24
LIG3-211ENST00000588713 POGZQ7Z3K3 1410 aa7.32□□□□□ -1.24
LIG3-211ENST00000588713 TTC37Q6PGP7 1564 aa7.29□□□□□ -1.24
LIG3-211ENST00000588713 ARHGEF40Q8TER5 1519 aa7.29□□□□□ -1.24
LIG3-211ENST00000588713 SETD1AO15047 1707 aaKnown RBP7.29□□□□□ -1.24
LIG3-211ENST00000588713 FANCAO15360 1455 aa7.29□□□□□ -1.24
LIG3-211ENST00000588713 FER1L4A9Z1Z3 1794 aa7.28□□□□□ -1.24
LIG3-211ENST00000588713 ZBTB22O15209 634 aa7.28□□□□□ -1.24
LIG3-211ENST00000588713 POTEAQ6S8J7 498 aa7.28□□□□□ -1.24
LIG3-211ENST00000588713 TOM1O60784 492 aa7.27□□□□□ -1.25
LIG3-211ENST00000588713 AKT1S1Q96B36 256 aa7.27□□□□□ -1.25
LIG3-211ENST00000588713 FRMPD1Q5SYB0 1578 aa7.27□□□□□ -1.25
LIG3-211ENST00000588713 SRCAPQ6ZRS2 3230 aa7.26□□□□□ -1.25
LIG3-211ENST00000588713 AKNAQ7Z591 1439 aa7.25□□□□□ -1.25
LIG3-211ENST00000588713 UPF1Q92900 1129 aaKnown RBP eCLIP7.24□□□□□ -1.25
LIG3-211ENST00000588713 NCOA1Q15788 1441 aa7.24□□□□□ -1.25
LIG3-211ENST00000588713 SIGLEC1Q9BZZ2 1709 aa7.24□□□□□ -1.25
LIG3-211ENST00000588713 KIAA0556O60303 1618 aa7.23□□□□□ -1.25
LIG3-211ENST00000588713 PHLDB1Q86UU1 1377 aa7.23□□□□□ -1.25
LIG3-211ENST00000588713 NCKAP5LQ9HCH0 1330 aa7.23□□□□□ -1.25
LIG3-211ENST00000588713 ARID3CA6NKF2 412 aa7.22□□□□□ -1.25
LIG3-211ENST00000588713 IFFO2Q5TF58 517 aa7.22□□□□□ -1.25
LIG3-211ENST00000588713 ATXN8OSP0DMR3 200 aa7.21□□□□□ -1.26
LIG3-211ENST00000588713 REM2Q8IYK8 340 aaPredicted RBP7.21□□□□□ -1.26
LIG3-211ENST00000588713 DISP1Q96F81 1524 aa7.2□□□□□ -1.26
LIG3-211ENST00000588713 NEO1Q92859 1461 aa7.19□□□□□ -1.26
LIG3-211ENST00000588713 ZFYVE16Q7Z3T8 1539 aa7.19□□□□□ -1.26
LIG3-211ENST00000588713 ARHGEF12Q9NZN5 1544 aa7.19□□□□□ -1.26
LIG3-211ENST00000588713 CAMSAP1Q5T5Y3 1602 aa7.19□□□□□ -1.26
LIG3-211ENST00000588713 DENND4BO75064 1496 aaPredicted RBP7.18□□□□□ -1.26
LIG3-211ENST00000588713 IQGAP2Q13576 1575 aa7.18□□□□□ -1.26
LIG3-211ENST00000588713 TRIM52Q96A61 297 aa7.17□□□□□ -1.26
LIG3-211ENST00000588713 EFCAB5A4FU69 1503 aa7.16□□□□□ -1.26
LIG3-211ENST00000588713 BIVM-ERCC5R4GMW8 1640 aa7.16□□□□□ -1.26
LIG3-211ENST00000588713 PTPRKQ15262 1439 aa7.15□□□□□ -1.27
LIG3-211ENST00000588713 ABCA9Q8IUA7 1624 aa7.14□□□□□ -1.27
LIG3-211ENST00000588713 RICTORQ6R327 1708 aa7.13□□□□□ -1.27
LIG3-211ENST00000588713 FHOD3Q2V2M9 1422 aa7.13□□□□□ -1.27
LIG3-211ENST00000588713 TRAPPC8Q9Y2L5 1435 aa7.13□□□□□ -1.27
LIG3-211ENST00000588713 PIP4P2Q8N4L2 257 aa7.13□□□□□ -1.27
LIG3-211ENST00000588713 RBM33Q96EV2 1170 aaKnown RBP7.13□□□□□ -1.27
LIG3-211ENST00000588713 IGF1RP08069 1367 aa7.12□□□□□ -1.27
LIG3-211ENST00000588713 SETD1BQ9UPS6 1966 aaKnown RBP7.12□□□□□ -1.27
LIG3-211ENST00000588713 PITPNM1O00562 1244 aa7.12□□□□□ -1.27
LIG3-211ENST00000588713 PKD2Q13563 968 aa7.12□□□□□ -1.27
LIG3-211ENST00000588713 ESF1Q9H501 851 aaKnown RBP7.12□□□□□ -1.27
LIG3-211ENST00000588713 ALKQ9UM73 1620 aa7.12□□□□□ -1.27
LIG3-211ENST00000588713 ZMYM4Q5VZL5 1548 aa7.11□□□□□ -1.27
LIG3-211ENST00000588713 C9orf84Q5VXU9 1444 aa7.11□□□□□ -1.27
LIG3-211ENST00000588713 C3P01024 1663 aa7.11□□□□□ -1.27
LIG3-211ENST00000588713 CPS1P31327 1500 aa7.11□□□□□ -1.27
LIG3-211ENST00000588713 HECW1Q76N89 1606 aa7.1□□□□□ -1.27
LIG3-211ENST00000588713 ABCA8O94911 1581 aa7.09□□□□□ -1.27
LIG3-211ENST00000588713 SPDYE2BA6NHP3 402 aa7.09□□□□□ -1.27
LIG3-211ENST00000588713 SPDYE6P0CI01 402 aa7.09□□□□□ -1.27
LIG3-211ENST00000588713 SPDYE2Q495Y8 402 aa7.09□□□□□ -1.27
LIG3-211ENST00000588713 ZRANB1Q9UGI0 708 aa7.09□□□□□ -1.27
LIG3-211ENST00000588713 ATP10AO60312 1499 aa7.09□□□□□ -1.27
LIG3-211ENST00000588713 MAGI2Q86UL8 1455 aa7.09□□□□□ -1.27
LIG3-211ENST00000588713 CARMIL1Q5VZK9 1371 aa7.08□□□□□ -1.28
LIG3-211ENST00000588713 UGGT2Q9NYU1 1516 aa7.08□□□□□ -1.28
LIG3-211ENST00000588713 SP7Q8TDD2 431 aaPredicted RBP7.08□□□□□ -1.28
LIG3-211ENST00000588713 SHANK2Q9UPX8 1470 aa7.08□□□□□ -1.28
LIG3-211ENST00000588713 SETBP1Q9Y6X0 1596 aa7.08□□□□□ -1.28
LIG3-211ENST00000588713 HAX1O00165 279 aa7.07□□□□□ -1.28
LIG3-211ENST00000588713 PLA2R1Q13018 1463 aa7.06□□□□□ -1.28
LIG3-211ENST00000588713 TCOF1Q13428 1488 aaKnown RBP7.06□□□□□ -1.28
LIG3-211ENST00000588713 FXR2P51116 673 aaKnown RBP eCLIP7.06□□□□□ -1.28
LIG3-211ENST00000588713 MYT1LQ9UL68 1186 aa7.06□□□□□ -1.28
LIG3-211ENST00000588713 ATP10BO94823 1461 aa7.05□□□□□ -1.28
LIG3-211ENST00000588713 RAPGEF2Q9Y4G8 1499 aa7.05□□□□□ -1.28
LIG3-211ENST00000588713 KIF27Q86VH2 1401 aa7.05□□□□□ -1.28
LIG3-211ENST00000588713 LRRC7Q96NW7 1537 aa7.05□□□□□ -1.28
LIG3-211ENST00000588713 MKRN4PQ13434 485 aaPredicted RBP7.03□□□□□ -1.28
LIG3-211ENST00000588713 ZNF692Q9BU19 519 aaPredicted RBP7.03□□□□□ -1.28
LIG3-211ENST00000588713 CLEC11AQ9Y240 323 aa7.03□□□□□ -1.28
LIG3-211ENST00000588713 SUPT6HQ7KZ85 1726 aaKnown RBP7.03□□□□□ -1.28
LIG3-211ENST00000588713 CFAP74Q9C0B2 1584 aa7.03□□□□□ -1.28
LIG3-211ENST00000588713 SCAPERQ9BY12 1400 aa7.02□□□□□ -1.29
LIG3-211ENST00000588713 RNF17Q9BXT8 1623 aaKnown RBP7.01□□□□□ -1.29
LIG3-211ENST00000588713 CEP170BQ9Y4F5 1589 aaPredicted RBP7.01□□□□□ -1.29
LIG3-211ENST00000588713 YY1P25490 414 aa7.01□□□□□ -1.29
LIG3-211ENST00000588713 RXRBP28702 533 aa7.01□□□□□ -1.29
LIG3-211ENST00000588713 MEX3CQ5U5Q3 659 aaKnown RBP7.01□□□□□ -1.29
LIG3-211ENST00000588713 SPDYE1Q8NFV5 336 aaPredicted RBP7.01□□□□□ -1.29
LIG3-211ENST00000588713 MYO3AQ8NEV4 1616 aa7.01□□□□□ -1.29
LIG3-211ENST00000588713 NPATQ14207 1427 aa7.01□□□□□ -1.29
LIG3-211ENST00000588713 SENP3-EIF4A1A0A087X0R7 540 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms