RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 NAIPQ13075 1403 aa29.33■■■□□ 2.29
TRIM47-204ENST00000587339 ABCC5O15440 1437 aa29.32■■■□□ 2.28
TRIM47-204ENST00000587339 AKNAQ7Z591 1439 aa29.3■■■□□ 2.28
TRIM47-204ENST00000587339 KCNH8Q96L42 1107 aa29.3■■■□□ 2.28
TRIM47-204ENST00000587339 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.29■■■□□ 2.28
TRIM47-204ENST00000587339 TTC37Q6PGP7 1564 aa29.27■■■□□ 2.28
TRIM47-204ENST00000587339 RRP7BPQ9NSQ0 103 aa29.27■■■□□ 2.28
TRIM47-204ENST00000587339 PREX2Q70Z35 1606 aa29.26■■■□□ 2.28
TRIM47-204ENST00000587339 ROCK1Q13464 1354 aa29.24■■■□□ 2.27
TRIM47-204ENST00000587339 GCC2Q8IWJ2 1684 aa29.22■■■□□ 2.27
TRIM47-204ENST00000587339 CDC42BPBQ9Y5S2 1711 aa29.22■■■□□ 2.27
TRIM47-204ENST00000587339 WDR7Q9Y4E6 1490 aa29.19■■■□□ 2.26
TRIM47-204ENST00000587339 MYO5CQ9NQX4 1742 aa29.18■■■□□ 2.26
TRIM47-204ENST00000587339 ARHGAP5Q13017 1502 aa29.17■■■□□ 2.26
TRIM47-204ENST00000587339 NPM1P06748 294 aaKnown RBP eCLIP29.16■■■□□ 2.26
TRIM47-204ENST00000587339 CROCC2H7BZ55 1655 aa29.15■■■□□ 2.26
TRIM47-204ENST00000587339 MAPKBP1O60336 1514 aa29.15■■■□□ 2.26
TRIM47-204ENST00000587339 SAMD9LQ8IVG5 1584 aa29.15■■■□□ 2.26
TRIM47-204ENST00000587339 PLCH2O75038 1416 aa29.12■■■□□ 2.25
TRIM47-204ENST00000587339 ASXL2Q76L83 1435 aa29.12■■■□□ 2.25
TRIM47-204ENST00000587339 HNRNPMP52272 730 aaKnown RBP eCLIP29.11■■■□□ 2.25
TRIM47-204ENST00000587339 ARHGEF5Q12774 1597 aa29.1■■■□□ 2.25
TRIM47-204ENST00000587339 NCOA1Q15788 1441 aa29.1■■■□□ 2.25
TRIM47-204ENST00000587339 ADGRL2O95490 1459 aa29.1■■■□□ 2.25
TRIM47-204ENST00000587339 MBD5Q9P267 1494 aa29.1■■■□□ 2.25
TRIM47-204ENST00000587339 SHANK2Q9UPX8 1470 aa29.1■■■□□ 2.25
TRIM47-204ENST00000587339 ADGBQ8N7X0 1667 aa29.1■■■□□ 2.25
TRIM47-204ENST00000587339 TSPY4P0CV99 314 aa29.08■■■□□ 2.25
TRIM47-204ENST00000587339 TSPY10P0CW01 314 aa29.08■■■□□ 2.25
TRIM47-204ENST00000587339 KDM6BO15054 1643 aa29.07■■■□□ 2.24
TRIM47-204ENST00000587339 RSPH4AQ5TD94 716 aa29.07■■■□□ 2.24
TRIM47-204ENST00000587339 ANKRD30AQ9BXX3 1397 aa29.07■■■□□ 2.24
TRIM47-204ENST00000587339 C9orf84Q5VXU9 1444 aa29.06■■■□□ 2.24
TRIM47-204ENST00000587339 EFCAB2Q5VUJ9 269 aa29.05■■■□□ 2.24
TRIM47-204ENST00000587339 CCDC141Q6ZP82 1450 aa29.05■■■□□ 2.24
TRIM47-204ENST00000587339 PLEKHH2Q8IVE3 1493 aa29.05■■■□□ 2.24
TRIM47-204ENST00000587339 ACIN1Q9UKV3 1341 aaKnown RBP29.04■■■□□ 2.24
TRIM47-204ENST00000587339 SYCP2Q9BX26 1530 aa29.03■■■□□ 2.24
TRIM47-204ENST00000587339 KIAA1107Q9UPP5 1409 aa29.03■■■□□ 2.24
TRIM47-204ENST00000587339 ARAP3Q8WWN8 1544 aa29.01■■■□□ 2.23
TRIM47-204ENST00000587339 TRIM52Q96A61 297 aa29.01■■■□□ 2.23
TRIM47-204ENST00000587339 RIMBP3CA6NJZ7 1639 aa29■■■□□ 2.23
TRIM47-204ENST00000587339 RIMBP3BA6NNM3 1639 aa29■■■□□ 2.23
TRIM47-204ENST00000587339 ABCA9Q8IUA7 1624 aa29■■■□□ 2.23
TRIM47-204ENST00000587339 RIMBP3Q9UFD9 1639 aa29■■■□□ 2.23
TRIM47-204ENST00000587339 CYB5RLQ6IPT4 315 aa28.98■■■□□ 2.23
TRIM47-204ENST00000587339 ABCC1P33527 1531 aa28.92■■■□□ 2.22
TRIM47-204ENST00000587339 ARHGEF12Q9NZN5 1544 aa28.92■■■□□ 2.22
TRIM47-204ENST00000587339 ANKRD50Q9ULJ7 1429 aa28.92■■■□□ 2.22
TRIM47-204ENST00000587339 SIN3AQ96ST3 1273 aa28.9■■■□□ 2.22
TRIM47-204ENST00000587339 KIF15Q9NS87 1388 aa28.9■■■□□ 2.22
TRIM47-204ENST00000587339 FANCAO15360 1455 aa28.89■■■□□ 2.22
TRIM47-204ENST00000587339 MAST1Q9Y2H9 1570 aa28.89■■■□□ 2.22
TRIM47-204ENST00000587339 MPHOSPH9Q99550 1183 aa28.88■■■□□ 2.21
TRIM47-204ENST00000587339 NEUROD1Q13562 356 aa28.88■■■□□ 2.21
TRIM47-204ENST00000587339 DENND4BO75064 1496 aaPredicted RBP28.85■■■□□ 2.21
TRIM47-204ENST00000587339 TRAPPC8Q9Y2L5 1435 aa28.82■■■□□ 2.2
TRIM47-204ENST00000587339 TIMELESSQ9UNS1 1208 aa28.81■■■□□ 2.2
TRIM47-204ENST00000587339 CD109Q6YHK3 1445 aa28.8■■■□□ 2.2
TRIM47-204ENST00000587339 SLC4A1APQ9BWU0 796 aaKnown RBP28.79■■■□□ 2.2
TRIM47-204ENST00000587339 PLXNC1O60486 1568 aa28.79■■■□□ 2.2
TRIM47-204ENST00000587339 ADGRL1O94910 1474 aa28.77■■■□□ 2.2
TRIM47-204ENST00000587339 PZPP20742 1482 aa28.75■■■□□ 2.19
TRIM47-204ENST00000587339 AFAP1Q8N556 730 aa28.75■■■□□ 2.19
TRIM47-204ENST00000587339 SCAPERQ9BY12 1400 aa28.74■■■□□ 2.19
TRIM47-204ENST00000587339 SPAG9O60271 1321 aaKnown RBP28.73■■■□□ 2.19
TRIM47-204ENST00000587339 RTEL1-TNFRSF6BF6WH68 1400 aa28.71■■■□□ 2.19
TRIM47-204ENST00000587339 NUP155O75694 1391 aa28.71■■■□□ 2.19
TRIM47-204ENST00000587339 FOXD1Q16676 465 aa28.71■■■□□ 2.19
TRIM47-204ENST00000587339 CFAP74Q9C0B2 1584 aa28.7■■■□□ 2.18
TRIM47-204ENST00000587339 DUOX2Q9NRD8 1548 aa28.7■■■□□ 2.18
TRIM47-204ENST00000587339 TONSLQ96HA7 1378 aa28.69■■■□□ 2.18
TRIM47-204ENST00000587339 ZNF316A6NFI3 1004 aaPredicted RBP28.69■■■□□ 2.18
TRIM47-204ENST00000587339 ZFYVE16Q7Z3T8 1539 aa28.67■■■□□ 2.18
TRIM47-204ENST00000587339 KDM5DQ9BY66 1539 aa28.67■■■□□ 2.18
TRIM47-204ENST00000587339 ANKRD30BQ9BXX2 1392 aa28.65■■■□□ 2.18
TRIM47-204ENST00000587339 ERBINQ96RT1 1412 aa28.64■■■□□ 2.18
TRIM47-204ENST00000587339 PKD2Q13563 968 aa28.61■■■□□ 2.17
TRIM47-204ENST00000587339 GLI2P10070 1586 aa28.61■■■□□ 2.17
TRIM47-204ENST00000587339 ATP7AQ04656 1500 aa28.61■■■□□ 2.17
TRIM47-204ENST00000587339 INO80Q9ULG1 1556 aaPredicted RBP28.61■■■□□ 2.17
TRIM47-204ENST00000587339 ZNF518AQ6AHZ1 1483 aa28.6■■■□□ 2.17
TRIM47-204ENST00000587339 PPP1R15AO75807 674 aaPredicted RBP28.6■■■□□ 2.17
TRIM47-204ENST00000587339 MAP3K4Q9Y6R4 1608 aa28.59■■■□□ 2.17
TRIM47-204ENST00000587339 NEO1Q92859 1461 aa28.59■■■□□ 2.17
TRIM47-204ENST00000587339 UNC13BO14795 1591 aa28.58■■■□□ 2.17
TRIM47-204ENST00000587339 MYT1LQ9UL68 1186 aa28.57■■■□□ 2.16
TRIM47-204ENST00000587339 FAM135AQ9P2D6 1515 aa28.55■■■□□ 2.16
TRIM47-204ENST00000587339 RPRD2Q5VT52 1461 aaKnown RBP28.54■■■□□ 2.16
TRIM47-204ENST00000587339 POGZQ7Z3K3 1410 aa28.54■■■□□ 2.16
TRIM47-204ENST00000587339 FAM69CQ0P6D2 419 aa28.54■■■□□ 2.16
TRIM47-204ENST00000587339 DIP2BQ9P265 1576 aa28.54■■■□□ 2.16
TRIM47-204ENST00000587339 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.52■■■□□ 2.16
TRIM47-204ENST00000587339 MAGI2Q86UL8 1455 aa28.49■■■□□ 2.15
TRIM47-204ENST00000587339 KDM5CP41229 1560 aa28.49■■■□□ 2.15
TRIM47-204ENST00000587339 KIDINS220Q9ULH0 1771 aa28.47■■■□□ 2.15
TRIM47-204ENST00000587339 IQGAP3Q86VI3 1631 aa28.47■■■□□ 2.15
TRIM47-204ENST00000587339 MLH3Q9UHC1 1453 aa28.44■■■□□ 2.14
TRIM47-204ENST00000587339 DHX29Q7Z478 1369 aaKnown RBP28.44■■■□□ 2.14
TRIM47-204ENST00000587339 DIEXFQ68CQ4 756 aaKnown RBP28.44■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms