RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 ABCC5O15440 1437 aa20.73■□□□□ 0.91
LIG3-205ENST00000585941 ADGBQ8N7X0 1667 aa20.7■□□□□ 0.9
LIG3-205ENST00000585941 CROCC2H7BZ55 1655 aa20.69■□□□□ 0.9
LIG3-205ENST00000585941 TIMELESSQ9UNS1 1208 aa20.69■□□□□ 0.9
LIG3-205ENST00000585941 ZNF644Q9H582 1327 aaPredicted RBP20.68■□□□□ 0.9
LIG3-205ENST00000585941 ZNF316A6NFI3 1004 aaPredicted RBP20.68■□□□□ 0.9
LIG3-205ENST00000585941 CHIC2Q9UKJ5 165 aa20.68■□□□□ 0.9
LIG3-205ENST00000585941 KDM5BQ9UGL1 1544 aa20.68■□□□□ 0.9
LIG3-205ENST00000585941 RRP7BPQ9NSQ0 103 aa20.67■□□□□ 0.9
LIG3-205ENST00000585941 PREX2Q70Z35 1606 aa20.67■□□□□ 0.9
LIG3-205ENST00000585941 ZCCHC11Q5TAX3 1644 aaKnown RBP20.66■□□□□ 0.9
LIG3-205ENST00000585941 ADGRL2O95490 1459 aa20.65■□□□□ 0.9
LIG3-205ENST00000585941 OSCARQ8IYS5 282 aa20.64■□□□□ 0.89
LIG3-205ENST00000585941 SHANK2Q9UPX8 1470 aa20.63■□□□□ 0.89
LIG3-205ENST00000585941 ARHGEF5Q12774 1597 aa20.62■□□□□ 0.89
LIG3-205ENST00000585941 ZNF777Q9ULD5 760 aaPredicted RBP20.62■□□□□ 0.89
LIG3-205ENST00000585941 CDC42BPBQ9Y5S2 1711 aa20.62■□□□□ 0.89
LIG3-205ENST00000585941 MYO5CQ9NQX4 1742 aa20.6■□□□□ 0.89
LIG3-205ENST00000585941 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.59■□□□□ 0.89
LIG3-205ENST00000585941 ANKRD30AQ9BXX3 1397 aa20.59■□□□□ 0.89
LIG3-205ENST00000585941 NCOA1Q15788 1441 aa20.59■□□□□ 0.89
LIG3-205ENST00000585941 RSPH4AQ5TD94 716 aa20.58■□□□□ 0.89
LIG3-205ENST00000585941 TTC37Q6PGP7 1564 aa20.58■□□□□ 0.89
LIG3-205ENST00000585941 KDM6BO15054 1643 aa20.58■□□□□ 0.89
LIG3-205ENST00000585941 PLEKHH2Q8IVE3 1493 aa20.56■□□□□ 0.88
LIG3-205ENST00000585941 SAMD9LQ8IVG5 1584 aa20.55■□□□□ 0.88
LIG3-205ENST00000585941 DIEXFQ68CQ4 756 aaKnown RBP20.54■□□□□ 0.88
LIG3-205ENST00000585941 TRIM52Q96A61 297 aa20.54■□□□□ 0.88
LIG3-205ENST00000585941 ARHGAP5Q13017 1502 aa20.54■□□□□ 0.88
LIG3-205ENST00000585941 TSPY4P0CV99 314 aa20.53■□□□□ 0.88
LIG3-205ENST00000585941 TSPY10P0CW01 314 aa20.53■□□□□ 0.88
LIG3-205ENST00000585941 C9orf84Q5VXU9 1444 aa20.53■□□□□ 0.88
LIG3-205ENST00000585941 CCDC141Q6ZP82 1450 aa20.52■□□□□ 0.88
LIG3-205ENST00000585941 MBD5Q9P267 1494 aa20.52■□□□□ 0.88
LIG3-205ENST00000585941 SIN3AQ96ST3 1273 aa20.52■□□□□ 0.88
LIG3-205ENST00000585941 KIAA1107Q9UPP5 1409 aa20.51■□□□□ 0.87
LIG3-205ENST00000585941 NEUROD1Q13562 356 aa20.51■□□□□ 0.87
LIG3-205ENST00000585941 PLCH2O75038 1416 aa20.49■□□□□ 0.87
LIG3-205ENST00000585941 ARAP3Q8WWN8 1544 aa20.49■□□□□ 0.87
LIG3-205ENST00000585941 MPHOSPH9Q99550 1183 aa20.49■□□□□ 0.87
LIG3-205ENST00000585941 MAST1Q9Y2H9 1570 aa20.48■□□□□ 0.87
LIG3-205ENST00000585941 WDR7Q9Y4E6 1490 aa20.48■□□□□ 0.87
LIG3-205ENST00000585941 KCNH8Q96L42 1107 aa20.47■□□□□ 0.87
LIG3-205ENST00000585941 TONSLQ96HA7 1378 aa20.46■□□□□ 0.87
LIG3-205ENST00000585941 ANKRD50Q9ULJ7 1429 aa20.46■□□□□ 0.87
LIG3-205ENST00000585941 DENND4BO75064 1496 aaPredicted RBP20.46■□□□□ 0.87
LIG3-205ENST00000585941 HNRNPMP52272 730 aaKnown RBP eCLIP20.45■□□□□ 0.86
LIG3-205ENST00000585941 SYCP2Q9BX26 1530 aa20.45■□□□□ 0.86
LIG3-205ENST00000585941 EFCAB2Q5VUJ9 269 aa20.44■□□□□ 0.86
LIG3-205ENST00000585941 PPP1R15AO75807 674 aaPredicted RBP20.42■□□□□ 0.86
LIG3-205ENST00000585941 KIF15Q9NS87 1388 aa20.41■□□□□ 0.86
LIG3-205ENST00000585941 ABCA9Q8IUA7 1624 aa20.4■□□□□ 0.86
LIG3-205ENST00000585941 PLXNC1O60486 1568 aa20.39■□□□□ 0.85
LIG3-205ENST00000585941 SLC4A1APQ9BWU0 796 aaKnown RBP20.38■□□□□ 0.85
LIG3-205ENST00000585941 PZPP20742 1482 aa20.38■□□□□ 0.85
LIG3-205ENST00000585941 ABCC1P33527 1531 aa20.38■□□□□ 0.85
LIG3-205ENST00000585941 KDM5DQ9BY66 1539 aa20.38■□□□□ 0.85
LIG3-205ENST00000585941 NPM1P06748 294 aaKnown RBP eCLIP20.38■□□□□ 0.85
LIG3-205ENST00000585941 ANKRD30BQ9BXX2 1392 aa20.36■□□□□ 0.85
LIG3-205ENST00000585941 ASXL2Q76L83 1435 aa20.36■□□□□ 0.85
LIG3-205ENST00000585941 RPRD2Q5VT52 1461 aaKnown RBP20.33■□□□□ 0.84
LIG3-205ENST00000585941 ARHGEF12Q9NZN5 1544 aa20.32■□□□□ 0.84
LIG3-205ENST00000585941 DUOX2Q9NRD8 1548 aa20.3■□□□□ 0.84
LIG3-205ENST00000585941 NUP155O75694 1391 aa20.29■□□□□ 0.84
LIG3-205ENST00000585941 RTEL1-TNFRSF6BF6WH68 1400 aa20.28■□□□□ 0.84
LIG3-205ENST00000585941 FANCAO15360 1455 aa20.28■□□□□ 0.84
LIG3-205ENST00000585941 UNC13BO14795 1591 aa20.27■□□□□ 0.83
LIG3-205ENST00000585941 ERBINQ96RT1 1412 aa20.26■□□□□ 0.83
LIG3-205ENST00000585941 FOXD1Q16676 465 aa20.25■□□□□ 0.83
LIG3-205ENST00000585941 CFAP74Q9C0B2 1584 aa20.24■□□□□ 0.83
LIG3-205ENST00000585941 PKD2Q13563 968 aa20.24■□□□□ 0.83
LIG3-205ENST00000585941 TRAPPC8Q9Y2L5 1435 aa20.23■□□□□ 0.83
LIG3-205ENST00000585941 DNAJC5Q9H3Z4 198 aa20.22■□□□□ 0.83
LIG3-205ENST00000585941 SPAG9O60271 1321 aaKnown RBP20.21■□□□□ 0.83
LIG3-205ENST00000585941 FAM135AQ9P2D6 1515 aa20.21■□□□□ 0.83
LIG3-205ENST00000585941 ADGRL1O94910 1474 aa20.2■□□□□ 0.82
LIG3-205ENST00000585941 TEX14Q8IWB6 1497 aa20.2■□□□□ 0.82
LIG3-205ENST00000585941 ZFYVE16Q7Z3T8 1539 aa20.19■□□□□ 0.82
LIG3-205ENST00000585941 IQGAP3Q86VI3 1631 aa20.19■□□□□ 0.82
LIG3-205ENST00000585941 L3MBTL2Q969R5 705 aa20.19■□□□□ 0.82
LIG3-205ENST00000585941 MAGI2Q86UL8 1455 aa20.18■□□□□ 0.82
LIG3-205ENST00000585941 INO80Q9ULG1 1556 aaPredicted RBP20.17■□□□□ 0.82
LIG3-205ENST00000585941 ATP7AQ04656 1500 aa20.16■□□□□ 0.82
LIG3-205ENST00000585941 CD109Q6YHK3 1445 aa20.15■□□□□ 0.82
LIG3-205ENST00000585941 SCAPERQ9BY12 1400 aa20.15■□□□□ 0.82
LIG3-205ENST00000585941 RIMBP3CA6NJZ7 1639 aa20.13■□□□□ 0.81
LIG3-205ENST00000585941 RIMBP3BA6NNM3 1639 aa20.13■□□□□ 0.81
LIG3-205ENST00000585941 RIMBP3Q9UFD9 1639 aa20.13■□□□□ 0.81
LIG3-205ENST00000585941 AFAP1Q8N556 730 aa20.13■□□□□ 0.81
LIG3-205ENST00000585941 MIER1Q8N108 512 aa20.12■□□□□ 0.81
LIG3-205ENST00000585941 ZNF518AQ6AHZ1 1483 aa20.11■□□□□ 0.81
LIG3-205ENST00000585941 EIF2AK4Q9P2K8 1649 aaKnown RBP20.1■□□□□ 0.81
LIG3-205ENST00000585941 DEPDC5O75140 1603 aa20.09■□□□□ 0.81
LIG3-205ENST00000585941 NEO1Q92859 1461 aa20.08■□□□□ 0.81
LIG3-205ENST00000585941 ATP10AO60312 1499 aa20.06■□□□□ 0.8
LIG3-205ENST00000585941 GLI2P10070 1586 aa20.06■□□□□ 0.8
LIG3-205ENST00000585941 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.06■□□□□ 0.8
LIG3-205ENST00000585941 KDM5CP41229 1560 aa20.05■□□□□ 0.8
LIG3-205ENST00000585941 EIF4G2P78344 907 aaKnown RBP eCLIP20.05■□□□□ 0.8
LIG3-205ENST00000585941 CYB5RLQ6IPT4 315 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms