RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 MLECQ14165 292 aa36.42■■■■□ 3.42
SHMT1-210ENST00000583780 FER1L4A9Z1Z3 1794 aa36.33■■■■□ 3.41
SHMT1-210ENST00000583780 EFCAB2Q5VUJ9 269 aa36.33■■■■□ 3.41
SHMT1-210ENST00000583780 ATP1B4Q9UN42 357 aaPredicted RBP36.33■■■■□ 3.41
SHMT1-210ENST00000583780 ATP10AO60312 1499 aa36.32■■■■□ 3.41
SHMT1-210ENST00000583780 EHMT2Q96KQ7 1210 aa36.3■■■■□ 3.4
SHMT1-210ENST00000583780 UBTFP17480 764 aaKnown RBP36.29■■■■□ 3.4
SHMT1-210ENST00000583780 MYO5CQ9NQX4 1742 aa36.28■■■■□ 3.4
SHMT1-210ENST00000583780 FMN1Q68DA7 1419 aa36.27■■■■□ 3.4
SHMT1-210ENST00000583780 ARHGAP35Q9NRY4 1499 aa36.27■■■■□ 3.4
SHMT1-210ENST00000583780 ARHGEF12Q9NZN5 1544 aa36.27■■■■□ 3.4
SHMT1-210ENST00000583780 CDK11AQ9UQ88 783 aaPredicted RBP36.24■■■■□ 3.39
SHMT1-210ENST00000583780 C9orf84Q5VXU9 1444 aa36.24■■■■□ 3.39
SHMT1-210ENST00000583780 CERKQ8TCT0 537 aa36.23■■■■□ 3.39
SHMT1-210ENST00000583780 KIF14Q15058 1648 aa36.23■■■■□ 3.39
SHMT1-210ENST00000583780 CEBPAP49715 358 aaPredicted RBP36.22■■■■□ 3.39
SHMT1-210ENST00000583780 AFAP1Q8N556 730 aa36.21■■■■□ 3.39
SHMT1-210ENST00000583780 TROQ12816 1431 aaPredicted RBP36.16■■■■□ 3.38
SHMT1-210ENST00000583780 LRRIQ1Q96JM4 1722 aa36.14■■■■□ 3.38
SHMT1-210ENST00000583780 ZNF518AQ6AHZ1 1483 aa36.13■■■■□ 3.37
SHMT1-210ENST00000583780 PREX1Q8TCU6 1659 aa36.12■■■■□ 3.37
SHMT1-210ENST00000583780 KDM5CP41229 1560 aa36.11■■■■□ 3.37
SHMT1-210ENST00000583780 SETD1BQ9UPS6 1966 aaKnown RBP36.11■■■■□ 3.37
SHMT1-210ENST00000583780 ARHGAP5Q13017 1502 aa36.1■■■■□ 3.37
SHMT1-210ENST00000583780 CDC42BPBQ9Y5S2 1711 aa36.07■■■■□ 3.36
SHMT1-210ENST00000583780 STRCQ7RTU9 1775 aa36.05■■■■□ 3.36
SHMT1-210ENST00000583780 DIP2CQ9Y2E4 1556 aa36.03■■■■□ 3.36
SHMT1-210ENST00000583780 CLIP1P30622 1438 aa36.02■■■■□ 3.36
SHMT1-210ENST00000583780 CHIC1Q5VXU3 224 aa36.01■■■■□ 3.36
SHMT1-210ENST00000583780 MYT1LQ9UL68 1186 aa36.01■■■■□ 3.36
SHMT1-210ENST00000583780 MLH3Q9UHC1 1453 aa35.99■■■■□ 3.35
SHMT1-210ENST00000583780 REREQ9P2R6 1566 aa35.98■■■■□ 3.35
SHMT1-210ENST00000583780 DMRT2Q9Y5R5 561 aa35.96■■■■□ 3.35
SHMT1-210ENST00000583780 TRAPPC8Q9Y2L5 1435 aa35.96■■■■□ 3.35
SHMT1-210ENST00000583780 ABCA6Q8N139 1617 aa35.96■■■■□ 3.35
SHMT1-210ENST00000583780 UHRF1BP1Q6BDS2 1440 aa35.93■■■■□ 3.34
SHMT1-210ENST00000583780 C3P01024 1663 aa35.91■■■■□ 3.34
SHMT1-210ENST00000583780 PREX2Q70Z35 1606 aa35.9■■■■□ 3.34
SHMT1-210ENST00000583780 AGLP35573 1532 aa35.9■■■■□ 3.34
SHMT1-210ENST00000583780 ABCC1P33527 1531 aa35.88■■■■□ 3.33
SHMT1-210ENST00000583780 CASKIN1Q8WXD9 1431 aa35.88■■■■□ 3.33
SHMT1-210ENST00000583780 ITSN2Q9NZM3 1697 aa35.85■■■■□ 3.33
SHMT1-210ENST00000583780 KIDINS220Q9ULH0 1771 aa35.85■■■■□ 3.33
SHMT1-210ENST00000583780 CDC42BPAQ5VT25 1732 aa35.83■■■■□ 3.33
SHMT1-210ENST00000583780 CCDC18Q5T9S5 1454 aa35.81■■■■□ 3.32
SHMT1-210ENST00000583780 PTPRTO14522 1441 aa35.8■■■■□ 3.32
SHMT1-210ENST00000583780 ESF1Q9H501 851 aaKnown RBP35.79■■■■□ 3.32
SHMT1-210ENST00000583780 SAMD9LQ8IVG5 1584 aa35.7■■■■□ 3.31
SHMT1-210ENST00000583780 CNTLNQ9NXG0 1405 aa35.7■■■■□ 3.31
SHMT1-210ENST00000583780 ZNF777Q9ULD5 760 aaPredicted RBP35.7■■■■□ 3.31
SHMT1-210ENST00000583780 LTBP4Q8N2S1 1624 aa35.68■■■■□ 3.3
SHMT1-210ENST00000583780 GPATCH8Q9UKJ3 1502 aaKnown RBP35.67■■■■□ 3.3
SHMT1-210ENST00000583780 HNRNPMP52272 730 aaKnown RBP eCLIP35.67■■■■□ 3.3
SHMT1-210ENST00000583780 ILDR2Q71H61 639 aa35.66■■■■□ 3.3
SHMT1-210ENST00000583780 NCOA1Q15788 1441 aa35.65■■■■□ 3.3
SHMT1-210ENST00000583780 FYCO1Q9BQS8 1478 aa35.64■■■■□ 3.3
SHMT1-210ENST00000583780 ZMYM3Q14202 1370 aa35.64■■■■□ 3.3
SHMT1-210ENST00000583780 SPAG9O60271 1321 aaKnown RBP35.62■■■■□ 3.29
SHMT1-210ENST00000583780 SYCP2Q9BX26 1530 aa35.61■■■■□ 3.29
SHMT1-210ENST00000583780 DISP3Q9P2K9 1392 aa35.61■■■■□ 3.29
SHMT1-210ENST00000583780 MROH2AA6NES4 1674 aa35.6■■■■□ 3.29
SHMT1-210ENST00000583780 NPATQ14207 1427 aa35.59■■■■□ 3.29
SHMT1-210ENST00000583780 SUPT6HQ7KZ85 1726 aaKnown RBP35.59■■■■□ 3.29
SHMT1-210ENST00000583780 CAMSAP1Q5T5Y3 1602 aa35.55■■■■□ 3.28
SHMT1-210ENST00000583780 KIAA1107Q9UPP5 1409 aa35.55■■■■□ 3.28
SHMT1-210ENST00000583780 CFDP1Q9UEE9 299 aaPredicted RBP35.52■■■■□ 3.28
SHMT1-210ENST00000583780 ATP7AQ04656 1500 aa35.51■■■■□ 3.27
SHMT1-210ENST00000583780 NCKAP5LQ9HCH0 1330 aa35.51■■■■□ 3.27
SHMT1-210ENST00000583780 IQSEC2Q5JU85 1478 aa35.5■■■■□ 3.27
SHMT1-210ENST00000583780 CLTCQ00610 1675 aaKnown RBP35.49■■■■□ 3.27
SHMT1-210ENST00000583780 PLXNC1O60486 1568 aa35.48■■■■□ 3.27
SHMT1-210ENST00000583780 A2MP01023 1474 aa35.48■■■■□ 3.27
SHMT1-210ENST00000583780 INO80Q9ULG1 1556 aaPredicted RBP35.47■■■■□ 3.27
SHMT1-210ENST00000583780 PLEKHH2Q8IVE3 1493 aa35.45■■■■□ 3.27
SHMT1-210ENST00000583780 CCNB3Q8WWL7 1395 aa35.44■■■■□ 3.26
SHMT1-210ENST00000583780 SOCS7O14512 581 aa35.44■■■■□ 3.26
SHMT1-210ENST00000583780 GGT6Q6P531 493 aa35.44■■■■□ 3.26
SHMT1-210ENST00000583780 PTPRKQ15262 1439 aa35.43■■■■□ 3.26
SHMT1-210ENST00000583780 ZNF335Q9H4Z2 1342 aaPredicted RBP35.4■■■■□ 3.26
SHMT1-210ENST00000583780 ZNF644Q9H582 1327 aaPredicted RBP35.4■■■■□ 3.26
SHMT1-210ENST00000583780 PPP6R1Q9UPN7 881 aa35.38■■■■□ 3.25
SHMT1-210ENST00000583780 ZNF142P52746 1687 aaPredicted RBP35.37■■■■□ 3.25
SHMT1-210ENST00000583780 MYO3AQ8NEV4 1616 aa35.37■■■■□ 3.25
SHMT1-210ENST00000583780 PKD2Q13563 968 aa35.37■■■■□ 3.25
SHMT1-210ENST00000583780 PLA2R1Q13018 1463 aa35.35■■■■□ 3.25
SHMT1-210ENST00000583780 MTUS2Q5JR59 1369 aa35.35■■■■□ 3.25
SHMT1-210ENST00000583780 TCOF1Q13428 1488 aaKnown RBP35.34■■■■□ 3.25
SHMT1-210ENST00000583780 MBD5Q9P267 1494 aa35.34■■■■□ 3.25
SHMT1-210ENST00000583780 SPATA31D1Q6ZQQ2 1576 aa35.34■■■■□ 3.25
SHMT1-210ENST00000583780 CEP170BQ9Y4F5 1589 aaPredicted RBP35.34■■■■□ 3.25
SHMT1-210ENST00000583780 ADGBQ8N7X0 1667 aa35.33■■■■□ 3.25
SHMT1-210ENST00000583780 TIAM1Q13009 1591 aa35.28■■■■□ 3.24
SHMT1-210ENST00000583780 UBAP1LF5GYI3 381 aa35.26■■■■□ 3.24
SHMT1-210ENST00000583780 RTEL1-TNFRSF6BF6WH68 1400 aa35.25■■■■□ 3.23
SHMT1-210ENST00000583780 DHX29Q7Z478 1369 aaKnown RBP35.24■■■■□ 3.23
SHMT1-210ENST00000583780 DNMT1P26358 1616 aaKnown RBP35.21■■■■□ 3.23
SHMT1-210ENST00000583780 A2ML1A8K2U0 1454 aa35.2■■■■□ 3.23
SHMT1-210ENST00000583780 FBXO31Q5XUX0 539 aaPredicted RBP35.18■■■■□ 3.22
SHMT1-210ENST00000583780 CEP162Q5TB80 1403 aa35.17■■■■□ 3.22
SHMT1-210ENST00000583780 EHBP1L1Q8N3D4 1523 aa35.16■■■■□ 3.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms