RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 PRG4Q92954 1404 aaPredicted RBP14.7□□□□□ -0.06
TOP3A-209ENST00000580095 SLC4A1APQ9BWU0 796 aaKnown RBP14.7□□□□□ -0.06
TOP3A-209ENST00000580095 NUP153P49790 1475 aaKnown RBP14.69□□□□□ -0.06
TOP3A-209ENST00000580095 C11orf95C9JLR9 678 aaPredicted RBP14.69□□□□□ -0.06
TOP3A-209ENST00000580095 KIAA0586Q9BVV6 1533 aa14.68□□□□□ -0.06
TOP3A-209ENST00000580095 CFDP1Q9UEE9 299 aaPredicted RBP14.68□□□□□ -0.06
TOP3A-209ENST00000580095 CCER2I3L3R5 266 aa14.68□□□□□ -0.06
TOP3A-209ENST00000580095 NBPF8Q3BBV2 869 aa14.67□□□□□ -0.06
TOP3A-209ENST00000580095 PLB1Q6P1J6 1458 aa14.67□□□□□ -0.06
TOP3A-209ENST00000580095 MIA2Q96PC5 1412 aa14.67□□□□□ -0.06
TOP3A-209ENST00000580095 GRIN2AQ12879 1464 aa14.67□□□□□ -0.06
TOP3A-209ENST00000580095 ABCC5O15440 1437 aa14.67□□□□□ -0.06
TOP3A-209ENST00000580095 EIF4G2P78344 907 aaKnown RBP eCLIP14.67□□□□□ -0.06
TOP3A-209ENST00000580095 DAPK1P53355 1430 aa14.66□□□□□ -0.06
TOP3A-209ENST00000580095 ZNF326Q5BKZ1 582 aaKnown RBP14.66□□□□□ -0.06
TOP3A-209ENST00000580095 CDK11AQ9UQ88 783 aaPredicted RBP14.66□□□□□ -0.06
TOP3A-209ENST00000580095 CCDC184Q52MB2 194 aa14.65□□□□□ -0.06
TOP3A-209ENST00000580095 HNRNPUQ00839 825 aaKnown RBP eCLIP14.65□□□□□ -0.06
TOP3A-209ENST00000580095 KIAA0556O60303 1618 aa14.64□□□□□ -0.07
TOP3A-209ENST00000580095 JPH4Q96JJ6 628 aa14.64□□□□□ -0.07
TOP3A-209ENST00000580095 TSHZ2Q9NRE2 1034 aa14.64□□□□□ -0.07
TOP3A-209ENST00000580095 POLR3GLQ9BT43 218 aa14.62□□□□□ -0.07
TOP3A-209ENST00000580095 IRX6P78412 446 aaPredicted RBP14.62□□□□□ -0.07
TOP3A-209ENST00000580095 SYNJ2O15056 1496 aa14.62□□□□□ -0.07
TOP3A-209ENST00000580095 ANKRD30BQ9BXX2 1392 aa14.61□□□□□ -0.07
TOP3A-209ENST00000580095 NEFLP07196 543 aa14.6□□□□□ -0.07
TOP3A-209ENST00000580095 GCC2Q8IWJ2 1684 aa14.6□□□□□ -0.07
TOP3A-209ENST00000580095 AKNAQ7Z591 1439 aa14.59□□□□□ -0.07
TOP3A-209ENST00000580095 RAPGEF6Q8TEU7 1601 aa14.58□□□□□ -0.07
TOP3A-209ENST00000580095 SENP3-EIF4A1A0A087X0R7 540 aa14.58□□□□□ -0.08
TOP3A-209ENST00000580095 FAM9BQ8IZU0 186 aa14.57□□□□□ -0.08
TOP3A-209ENST00000580095 PKD2Q13563 968 aa14.57□□□□□ -0.08
TOP3A-209ENST00000580095 TROQ12816 1431 aaPredicted RBP14.57□□□□□ -0.08
TOP3A-209ENST00000580095 CEP170Q5SW79 1584 aa14.57□□□□□ -0.08
TOP3A-209ENST00000580095 ROCK1Q13464 1354 aa14.56□□□□□ -0.08
TOP3A-209ENST00000580095 CAMSAP2Q08AD1 1489 aa14.55□□□□□ -0.08
TOP3A-209ENST00000580095 GPATCH8Q9UKJ3 1502 aaKnown RBP14.54□□□□□ -0.08
TOP3A-209ENST00000580095 PLEKHD1A6NEE1 506 aa14.54□□□□□ -0.08
TOP3A-209ENST00000580095 ANP32EQ9BTT0 268 aa14.54□□□□□ -0.08
TOP3A-209ENST00000580095 KIF14Q15058 1648 aa14.54□□□□□ -0.08
TOP3A-209ENST00000580095 NUP160Q12769 1436 aa14.54□□□□□ -0.08
TOP3A-209ENST00000580095 RPRD2Q5VT52 1461 aaKnown RBP14.53□□□□□ -0.08
TOP3A-209ENST00000580095 DNMT1P26358 1616 aaKnown RBP14.53□□□□□ -0.08
TOP3A-209ENST00000580095 NCOA1Q15788 1441 aa14.53□□□□□ -0.08
TOP3A-209ENST00000580095 CCDC7Q96M83 1385 aa14.53□□□□□ -0.08
TOP3A-209ENST00000580095 HNRNPMP52272 730 aaKnown RBP eCLIP14.53□□□□□ -0.08
TOP3A-209ENST00000580095 KIF7Q2M1P5 1343 aa14.52□□□□□ -0.08
TOP3A-209ENST00000580095 MRS2Q9HD23 443 aa14.52□□□□□ -0.09
TOP3A-209ENST00000580095 KDM2AQ9Y2K7 1162 aa14.52□□□□□ -0.09
TOP3A-209ENST00000580095 PRKRIP1Q9H875 184 aaPredicted RBP14.51□□□□□ -0.09
TOP3A-209ENST00000580095 CARMIL2Q6F5E8 1435 aa14.51□□□□□ -0.09
TOP3A-209ENST00000580095 PZPP20742 1482 aa14.51□□□□□ -0.09
TOP3A-209ENST00000580095 TEX14Q8IWB6 1497 aa14.51□□□□□ -0.09
TOP3A-209ENST00000580095 CNTLNQ9NXG0 1405 aa14.5□□□□□ -0.09
TOP3A-209ENST00000580095 CHD1O14646 1710 aa14.49□□□□□ -0.09
TOP3A-209ENST00000580095 NUP155O75694 1391 aa14.48□□□□□ -0.09
TOP3A-209ENST00000580095 ANKRD30AQ9BXX3 1397 aa14.47□□□□□ -0.09
TOP3A-209ENST00000580095 ANKRD50Q9ULJ7 1429 aa14.46□□□□□ -0.09
TOP3A-209ENST00000580095 ATP10BO94823 1461 aa14.46□□□□□ -0.1
TOP3A-209ENST00000580095 TSPY4P0CV99 314 aa14.45□□□□□ -0.1
TOP3A-209ENST00000580095 TSPY10P0CW01 314 aa14.45□□□□□ -0.1
TOP3A-209ENST00000580095 SPATA31E1Q6ZUB1 1445 aa14.43□□□□□ -0.1
TOP3A-209ENST00000580095 KIAA1107Q9UPP5 1409 aa14.43□□□□□ -0.1
TOP3A-209ENST00000580095 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.42□□□□□ -0.16e-6■□□□□ 8.3
TOP3A-209ENST00000580095 SHROOM2Q13796 1616 aa14.42□□□□□ -0.1
TOP3A-209ENST00000580095 USP47Q96K76 1375 aa14.42□□□□□ -0.1
TOP3A-209ENST00000580095 CLASP1Q7Z460 1538 aa14.42□□□□□ -0.1
TOP3A-209ENST00000580095 C9orf84Q5VXU9 1444 aa14.41□□□□□ -0.1
TOP3A-209ENST00000580095 DCAF11Q8TEB1 546 aa14.41□□□□□ -0.1
TOP3A-209ENST00000580095 PTPRGP23470 1445 aa14.4□□□□□ -0.1
TOP3A-209ENST00000580095 RGL3Q3MIN7 710 aa14.4□□□□□ -0.1
TOP3A-209ENST00000580095 CARD11Q9BXL7 1154 aa14.4□□□□□ -0.1
TOP3A-209ENST00000580095 KIF15Q9NS87 1388 aa14.39□□□□□ -0.11
TOP3A-209ENST00000580095 RBM19Q9Y4C8 960 aaKnown RBP14.38□□□□□ -0.11
TOP3A-209ENST00000580095 ABCC10Q5T3U5 1492 aa14.37□□□□□ -0.11
TOP3A-209ENST00000580095 ST20-MTHFSA0A0A6YYL1 179 aa14.37□□□□□ -0.11
TOP3A-209ENST00000580095 ADGRL2O95490 1459 aa14.36□□□□□ -0.11
TOP3A-209ENST00000580095 ITSN2Q9NZM3 1697 aa14.36□□□□□ -0.11
TOP3A-209ENST00000580095 ABCA8O94911 1581 aa14.35□□□□□ -0.11
TOP3A-209ENST00000580095 DHX29Q7Z478 1369 aaKnown RBP14.33□□□□□ -0.11
TOP3A-209ENST00000580095 CDC42BPAQ5VT25 1732 aa14.33□□□□□ -0.12
TOP3A-209ENST00000580095 MBD5Q9P267 1494 aa14.33□□□□□ -0.12
TOP3A-209ENST00000580095 ADCY10Q96PN6 1610 aa14.32□□□□□ -0.12
TOP3A-209ENST00000580095 B4GALNT3Q6L9W6 998 aa14.32□□□□□ -0.12
TOP3A-209ENST00000580095 BCORL1Q5H9F3 1711 aa14.31□□□□□ -0.12
TOP3A-209ENST00000580095 ADGBQ8N7X0 1667 aa14.31□□□□□ -0.12
TOP3A-209ENST00000580095 NBPF1Q3BBV0 1214 aa14.31□□□□□ -0.12
TOP3A-209ENST00000580095 ZBED9Q6R2W3 1325 aa14.3□□□□□ -0.12
TOP3A-209ENST00000580095 CROCC2H7BZ55 1655 aa14.3□□□□□ -0.12
TOP3A-209ENST00000580095 SALL2Q9Y467 1007 aaPredicted RBP14.29□□□□□ -0.12
TOP3A-209ENST00000580095 TMC1Q8TDI8 760 aa14.28□□□□□ -0.12
TOP3A-209ENST00000580095 ROCK2O75116 1388 aaKnown RBP14.27□□□□□ -0.12
TOP3A-209ENST00000580095 ERCC6L2Q5T890 1561 aa14.26□□□□□ -0.13
TOP3A-209ENST00000580095 SHANK2Q9UPX8 1470 aa14.25□□□□□ -0.13
TOP3A-209ENST00000580095 SAMD9LQ8IVG5 1584 aa14.25□□□□□ -0.13
TOP3A-209ENST00000580095 CCDC141Q6ZP82 1450 aa14.24□□□□□ -0.13
TOP3A-209ENST00000580095 SYCP2Q9BX26 1530 aa14.24□□□□□ -0.13
TOP3A-209ENST00000580095 ARHGAP5Q13017 1502 aa14.24□□□□□ -0.13
TOP3A-209ENST00000580095 KDM5CP41229 1560 aa14.24□□□□□ -0.13
TOP3A-209ENST00000580095 PPP4R2Q9NY27 417 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 106.4 ms