RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 CADPSQ9ULU8 1353 aa10.17□□□□□ -0.78
VPS53-219ENST00000576019 ZNF608Q9ULD9 1512 aaPredicted RBP10.17□□□□□ -0.78
VPS53-219ENST00000576019 FAM212AQ96EL1 285 aa10.16□□□□□ -0.78
VPS53-219ENST00000576019 SGIP1Q9BQI5 828 aa10.16□□□□□ -0.78
VPS53-219ENST00000576019 BAZ1BQ9UIG0 1483 aaKnown RBP10.16□□□□□ -0.78
VPS53-219ENST00000576019 CHADLQ6NUI6 762 aa10.15□□□□□ -0.78
VPS53-219ENST00000576019 CREBZFQ9NS37 354 aa10.14□□□□□ -0.79
VPS53-219ENST00000576019 KDM6BO15054 1643 aa10.14□□□□□ -0.79
VPS53-219ENST00000576019 CLASP1Q7Z460 1538 aa10.12□□□□□ -0.79
VPS53-219ENST00000576019 CHRM1P11229 460 aaPredicted RBP10.1□□□□□ -0.79
VPS53-219ENST00000576019 NPM2Q86SE8 214 aaKnown RBP10.09□□□□□ -0.79
VPS53-219ENST00000576019 URB2Q14146 1524 aaKnown RBP10.08□□□□□ -0.8
VPS53-219ENST00000576019 SEMA3EO15041 775 aa10.08□□□□□ -0.8
VPS53-219ENST00000576019 FARP1Q9Y4F1 1045 aaPredicted RBP10.08□□□□□ -0.8
VPS53-219ENST00000576019 GAPVD1Q14C86 1478 aa10.07□□□□□ -0.8
VPS53-219ENST00000576019 ZCCHC6Q5VYS8 1495 aaKnown RBP10.07□□□□□ -0.8
VPS53-219ENST00000576019 ARHGEF1Q92888 912 aaKnown RBP10.07□□□□□ -0.8
VPS53-219ENST00000576019 ARID3AQ99856 593 aa10.07□□□□□ -0.8
VPS53-219ENST00000576019 ZMYND15Q9H091 742 aa10.07□□□□□ -0.8
VPS53-219ENST00000576019 EIF4G3O43432 1585 aaKnown RBP10.06□□□□□ -0.8
VPS53-219ENST00000576019 FANCD2Q9BXW9 1451 aa10.06□□□□□ -0.8
VPS53-219ENST00000576019 TESPA1A2RU30 521 aaPredicted RBP10.06□□□□□ -0.8
VPS53-219ENST00000576019 PYGBP11216 843 aa10.06□□□□□ -0.8
VPS53-219ENST00000576019 HRCP23327 699 aa10.06□□□□□ -0.8
VPS53-219ENST00000576019 RSPH6AQ9H0K4 717 aa10.06□□□□□ -0.8
VPS53-219ENST00000576019 IFT140Q96RY7 1462 aa10.05□□□□□ -0.8
VPS53-219ENST00000576019 ZMYND10O75800 440 aa10.04□□□□□ -0.8
VPS53-219ENST00000576019 RASEFQ8IZ41 740 aa10.04□□□□□ -0.8
VPS53-219ENST00000576019 MNX1P50219 401 aaPredicted RBP10.03□□□□□ -0.8
VPS53-219ENST00000576019 HAX1O00165 279 aa10.02□□□□□ -0.81
VPS53-219ENST00000576019 C19orf67A6NJJ6 358 aa10.01□□□□□ -0.81
VPS53-219ENST00000576019 GPBP1L1Q9HC44 474 aaPredicted RBP10.01□□□□□ -0.81
VPS53-219ENST00000576019 E2F4Q16254 413 aa10□□□□□ -0.81
VPS53-219ENST00000576019 PEG3Q9GZU2 1588 aa9.98□□□□□ -0.81
VPS53-219ENST00000576019 IL27Q8NEV9 243 aa9.98□□□□□ -0.81
VPS53-219ENST00000576019 CERKQ8TCT0 537 aa9.98□□□□□ -0.81
VPS53-219ENST00000576019 C1orf115Q9H7X2 142 aa9.96□□□□□ -0.82
VPS53-219ENST00000576019 ABCC10Q5T3U5 1492 aa9.96□□□□□ -0.82
VPS53-219ENST00000576019 BARGINQ6ZT62 677 aa9.95□□□□□ -0.82
VPS53-219ENST00000576019 SYNJ1O43426 1573 aa9.94□□□□□ -0.82
VPS53-219ENST00000576019 EVX2Q03828 476 aa9.93□□□□□ -0.82
VPS53-219ENST00000576019 FAM69CQ0P6D2 419 aa9.92□□□□□ -0.82
VPS53-219ENST00000576019 MFRPQ9BY79 579 aa9.92□□□□□ -0.82
VPS53-219ENST00000576019 CD44P16070 742 aaKnown RBP9.91□□□□□ -0.82
VPS53-219ENST00000576019 SMYD5Q6GMV2 418 aa9.91□□□□□ -0.82
VPS53-219ENST00000576019 AK7Q96M32 723 aa9.91□□□□□ -0.82
VPS53-219ENST00000576019 KDM4CQ9H3R0 1056 aa9.91□□□□□ -0.82
VPS53-219ENST00000576019 DIP2BQ9P265 1576 aa9.91□□□□□ -0.82
VPS53-219ENST00000576019 SP7Q8TDD2 431 aaPredicted RBP9.9□□□□□ -0.82
VPS53-219ENST00000576019 ARID3CA6NKF2 412 aa9.89□□□□□ -0.83
VPS53-219ENST00000576019 PPP1R37O75864 691 aa9.89□□□□□ -0.83
VPS53-219ENST00000576019 TOP2BQ02880 1626 aa9.88□□□□□ -0.83
VPS53-219ENST00000576019 AQRO60306 1485 aaKnown RBP eCLIP9.87□□□□□ -0.83
VPS53-219ENST00000576019 MKRN3Q13064 507 aaKnown RBP9.86□□□□□ -0.83
VPS53-219ENST00000576019 KRI1Q8N9T8 703 aaKnown RBP9.86□□□□□ -0.83
VPS53-219ENST00000576019 PDAP1Q13442 181 aaKnown RBP9.85□□□□□ -0.83
VPS53-219ENST00000576019 ZNF467Q7Z7K2 595 aaPredicted RBP9.84□□□□□ -0.83
VPS53-219ENST00000576019 APBB1O00213 710 aa9.83□□□□□ -0.84
VPS53-219ENST00000576019 RBM26Q5T8P6 1007 aaKnown RBP9.83□□□□□ -0.84
VPS53-219ENST00000576019 GPIHBP1Q8IV16 184 aa9.83□□□□□ -0.84
VPS53-219ENST00000576019 PAK3O75914 559 aaPredicted RBP9.82□□□□□ -0.84
VPS53-219ENST00000576019 ZNF579Q8NAF0 562 aaKnown RBP9.82□□□□□ -0.84
VPS53-219ENST00000576019 CFTRP13569 1480 aa9.82□□□□□ -0.84
VPS53-219ENST00000576019 TSPOAP1O95153 1857 aa9.81□□□□□ -0.84
VPS53-219ENST00000576019 PDE4DQ08499 809 aa9.81□□□□□ -0.84
VPS53-219ENST00000576019 ZRANB1Q9UGI0 708 aa9.81□□□□□ -0.84
VPS53-219ENST00000576019 PCDHB8Q9UN66 801 aa9.81□□□□□ -0.84
VPS53-219ENST00000576019 PCDHB13Q9Y5F0 798 aa9.81□□□□□ -0.84
VPS53-219ENST00000576019 MAPKBP1O60336 1514 aa9.81□□□□□ -0.84
VPS53-219ENST00000576019 ZBTB7CA1YPR0 619 aa9.8□□□□□ -0.84
VPS53-219ENST00000576019 CCDC9Q9Y3X0 531 aaKnown RBP9.8□□□□□ -0.84
VPS53-219ENST00000576019 NCKAP5LQ9HCH0 1330 aa9.8□□□□□ -0.84
VPS53-219ENST00000576019 PCF11O94913 1555 aaKnown RBP9.8□□□□□ -0.84
VPS53-219ENST00000576019 TRIM66O15016 1216 aa9.79□□□□□ -0.84
VPS53-219ENST00000576019 PDIA4P13667 645 aaKnown RBP9.79□□□□□ -0.84
VPS53-219ENST00000576019 LARP6Q9BRS8 491 aaKnown RBP9.79□□□□□ -0.84
VPS53-219ENST00000576019 SNAPC4Q5SXM2 1469 aa9.79□□□□□ -0.84
VPS53-219ENST00000576019 TARBP1Q13395 1621 aaKnown RBP9.78□□□□□ -0.84
VPS53-219ENST00000576019 CLCN6P51797 869 aa9.78□□□□□ -0.84
VPS53-219ENST00000576019 MLLT3P42568 568 aaPredicted RBP9.76□□□□□ -0.85
VPS53-219ENST00000576019 PSEN1P49768 467 aa9.76□□□□□ -0.85
VPS53-219ENST00000576019 FBXO22Q8NEZ5 403 aa9.76□□□□□ -0.85
VPS53-219ENST00000576019 ZNF316A6NFI3 1004 aaPredicted RBP9.75□□□□□ -0.85
VPS53-219ENST00000576019 FAM117AQ9C073 453 aa9.75□□□□□ -0.85
VPS53-219ENST00000576019 TSPYL2Q9H2G4 693 aaPredicted RBP9.75□□□□□ -0.85
VPS53-219ENST00000576019 TOPBP1Q92547 1522 aa9.74□□□□□ -0.85
VPS53-219ENST00000576019 GABBR2O75899 941 aa9.74□□□□□ -0.85
VPS53-219ENST00000576019 NECTIN2Q92692 538 aa9.74□□□□□ -0.85
VPS53-219ENST00000576019 CCDC61Q9Y6R9 512 aa9.74□□□□□ -0.85
VPS53-219ENST00000576019 NLRP6P59044 892 aa9.73□□□□□ -0.85
VPS53-219ENST00000576019 CHMP7Q8WUX9 453 aaPredicted RBP9.73□□□□□ -0.85
VPS53-219ENST00000576019 PHF8Q9UPP1 1060 aa9.73□□□□□ -0.85
VPS53-219ENST00000576019 MFSD10Q14728 455 aa9.72□□□□□ -0.85
VPS53-219ENST00000576019 EFCAB3Q8N7B9 438 aa9.72□□□□□ -0.85
VPS53-219ENST00000576019 PHF12Q96QT6 1004 aa9.72□□□□□ -0.85
VPS53-219ENST00000576019 ARIH1Q9Y4X5 557 aaPredicted RBP9.72□□□□□ -0.85
VPS53-219ENST00000576019 CCDC82Q8N4S0 544 aa9.71□□□□□ -0.86
VPS53-219ENST00000576019 PDE4AP27815 886 aa9.7□□□□□ -0.86
VPS53-219ENST00000576019 DDX27Q96GQ7 796 aaKnown RBP9.7□□□□□ -0.86
VPS53-219ENST00000576019 MAGI1Q96QZ7 1491 aaPredicted RBP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms