RNA–Protein interactions for RNA: ENST00000574911.5

NCBP3-204, Transcript of nuclear cap binding subunit 3, humanhuman

TSL 1 (best)

Gene NCBP3, Length 2,701 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3-204ENST00000574911 TROQ12816 1431 aaPredicted RBP12.57□□□□□ -0.4
NCBP3-204ENST00000574911 SYNJ2O15056 1496 aa12.57□□□□□ -0.4
NCBP3-204ENST00000574911 ANKRD30BQ9BXX2 1392 aa12.56□□□□□ -0.4
NCBP3-204ENST00000574911 ZNF644Q9H582 1327 aaPredicted RBP12.56□□□□□ -0.4
NCBP3-204ENST00000574911 PRG4Q92954 1404 aaPredicted RBP12.55□□□□□ -0.4
NCBP3-204ENST00000574911 RPRD2Q5VT52 1461 aaKnown RBP12.55□□□□□ -0.4
NCBP3-204ENST00000574911 L3MBTL2Q969R5 705 aa12.55□□□□□ -0.4
NCBP3-204ENST00000574911 WASHC2AQ641Q2 1341 aa12.55□□□□□ -0.4
NCBP3-204ENST00000574911 ADCY10Q96PN6 1610 aa12.55□□□□□ -0.4
NCBP3-204ENST00000574911 ERCC6Q03468 1493 aa12.54□□□□□ -0.4
NCBP3-204ENST00000574911 ITSN2Q9NZM3 1697 aa12.54□□□□□ -0.4
NCBP3-204ENST00000574911 EIF4G2P78344 907 aaKnown RBP eCLIP12.53□□□□□ -0.48e-7■■■■■ 28.7
NCBP3-204ENST00000574911 FOXD1Q16676 465 aa12.53□□□□□ -0.4
NCBP3-204ENST00000574911 CAMSAP2Q08AD1 1489 aa12.53□□□□□ -0.4
NCBP3-204ENST00000574911 CHMP7Q8WUX9 453 aaPredicted RBP12.53□□□□□ -0.4
NCBP3-204ENST00000574911 NUP160Q12769 1436 aa12.53□□□□□ -0.4
NCBP3-204ENST00000574911 PLB1Q6P1J6 1458 aa12.53□□□□□ -0.4
NCBP3-204ENST00000574911 GPATCH8Q9UKJ3 1502 aaKnown RBP12.53□□□□□ -0.4
NCBP3-204ENST00000574911 TEX14Q8IWB6 1497 aa12.53□□□□□ -0.4
NCBP3-204ENST00000574911 ADGBQ8N7X0 1667 aa12.52□□□□□ -0.41
NCBP3-204ENST00000574911 KIF14Q15058 1648 aa12.51□□□□□ -0.41
NCBP3-204ENST00000574911 ADGRL2O95490 1459 aa12.51□□□□□ -0.41
NCBP3-204ENST00000574911 PZPP20742 1482 aa12.51□□□□□ -0.41
NCBP3-204ENST00000574911 CARMIL2Q6F5E8 1435 aa12.5□□□□□ -0.41
NCBP3-204ENST00000574911 NCOA1Q15788 1441 aa12.5□□□□□ -0.41
NCBP3-204ENST00000574911 CROCC2H7BZ55 1655 aa12.49□□□□□ -0.41
NCBP3-204ENST00000574911 FKBP8Q14318 412 aa12.49□□□□□ -0.41
NCBP3-204ENST00000574911 CFDP1Q9UEE9 299 aaPredicted RBP12.49□□□□□ -0.41
NCBP3-204ENST00000574911 CNTLNQ9NXG0 1405 aa12.49□□□□□ -0.41
NCBP3-204ENST00000574911 SLC4A1APQ9BWU0 796 aaKnown RBP12.49□□□□□ -0.41
NCBP3-204ENST00000574911 NBPF8Q3BBV2 869 aa12.48□□□□□ -0.41
NCBP3-204ENST00000574911 JPH4Q96JJ6 628 aa12.48□□□□□ -0.41
NCBP3-204ENST00000574911 TSHZ2Q9NRE2 1034 aa12.47□□□□□ -0.41
NCBP3-204ENST00000574911 ABCA8O94911 1581 aa12.47□□□□□ -0.41
NCBP3-204ENST00000574911 CCDC7Q96M83 1385 aa12.47□□□□□ -0.41
NCBP3-204ENST00000574911 C11orf95C9JLR9 678 aaPredicted RBP12.46□□□□□ -0.41
NCBP3-204ENST00000574911 SPATA31E1Q6ZUB1 1445 aa12.46□□□□□ -0.41
NCBP3-204ENST00000574911 FBLN2P98095 1184 aa12.45□□□□□ -0.42
NCBP3-204ENST00000574911 ABCC10Q5T3U5 1492 aa12.44□□□□□ -0.42
NCBP3-204ENST00000574911 KIAA1107Q9UPP5 1409 aa12.44□□□□□ -0.42
NCBP3-204ENST00000574911 MBD5Q9P267 1494 aa12.44□□□□□ -0.42
NCBP3-204ENST00000574911 NEFLP07196 543 aa12.44□□□□□ -0.42
NCBP3-204ENST00000574911 BCANQ96GW7 911 aa12.44□□□□□ -0.42
NCBP3-204ENST00000574911 ANKRD30AQ9BXX3 1397 aa12.43□□□□□ -0.42
NCBP3-204ENST00000574911 MYT1Q01538 1121 aa12.43□□□□□ -0.42
NCBP3-204ENST00000574911 POLR1AO95602 1720 aaPredicted RBP12.43□□□□□ -0.42
NCBP3-204ENST00000574911 CDC42BPAQ5VT25 1732 aa12.43□□□□□ -0.42
NCBP3-204ENST00000574911 ATP10BO94823 1461 aa12.43□□□□□ -0.42
NCBP3-204ENST00000574911 SHANK2Q9UPX8 1470 aa12.42□□□□□ -0.42
NCBP3-204ENST00000574911 ZNF777Q9ULD5 760 aaPredicted RBP12.42□□□□□ -0.42
NCBP3-204ENST00000574911 SLC24A1O60721 1099 aa12.42□□□□□ -0.42
NCBP3-204ENST00000574911 PLEKHD1A6NEE1 506 aa12.41□□□□□ -0.42
NCBP3-204ENST00000574911 HNRNPUQ00839 825 aaKnown RBP eCLIP12.4□□□□□ -0.42
NCBP3-204ENST00000574911 ANKRD50Q9ULJ7 1429 aa12.4□□□□□ -0.42
NCBP3-204ENST00000574911 PRKRIP1Q9H875 184 aaPredicted RBP12.4□□□□□ -0.42
NCBP3-204ENST00000574911 KIF7Q2M1P5 1343 aa12.39□□□□□ -0.43
NCBP3-204ENST00000574911 C9orf84Q5VXU9 1444 aa12.38□□□□□ -0.43
NCBP3-204ENST00000574911 KDM5DQ9BY66 1539 aa12.38□□□□□ -0.43
NCBP3-204ENST00000574911 PKD2Q13563 968 aa12.38□□□□□ -0.43
NCBP3-204ENST00000574911 CCDC184Q52MB2 194 aa12.38□□□□□ -0.43
NCBP3-204ENST00000574911 ARHGEF5Q12774 1597 aa12.37□□□□□ -0.43
NCBP3-204ENST00000574911 UHRF1BP1Q6BDS2 1440 aa12.36□□□□□ -0.43
NCBP3-204ENST00000574911 KDM5CP41229 1560 aa12.34□□□□□ -0.43
NCBP3-204ENST00000574911 NUP155O75694 1391 aa12.34□□□□□ -0.43
NCBP3-204ENST00000574911 PTPRGP23470 1445 aa12.34□□□□□ -0.43
NCBP3-204ENST00000574911 BCORL1Q5H9F3 1711 aa12.34□□□□□ -0.43
NCBP3-204ENST00000574911 USP47Q96K76 1375 aa12.33□□□□□ -0.43
NCBP3-204ENST00000574911 ARHGEF12Q9NZN5 1544 aa12.33□□□□□ -0.44
NCBP3-204ENST00000574911 TSPY4P0CV99 314 aa12.32□□□□□ -0.44
NCBP3-204ENST00000574911 TSPY10P0CW01 314 aa12.32□□□□□ -0.44
NCBP3-204ENST00000574911 RALGAPBQ86X10 1494 aa12.32□□□□□ -0.44
NCBP3-204ENST00000574911 DHX29Q7Z478 1369 aaKnown RBP12.32□□□□□ -0.44
NCBP3-204ENST00000574911 MRS2Q9HD23 443 aa12.31□□□□□ -0.44
NCBP3-204ENST00000574911 ARID4BQ4LE39 1312 aaPredicted RBP12.31□□□□□ -0.44
NCBP3-204ENST00000574911 KIF15Q9NS87 1388 aa12.31□□□□□ -0.44
NCBP3-204ENST00000574911 SAMD9LQ8IVG5 1584 aa12.31□□□□□ -0.44
NCBP3-204ENST00000574911 PREX2Q70Z35 1606 aa12.31□□□□□ -0.44
NCBP3-204ENST00000574911 HNRNPMP52272 730 aaKnown RBP eCLIP12.31□□□□□ -0.44
NCBP3-204ENST00000574911 CDC42BPBQ9Y5S2 1711 aa12.3□□□□□ -0.44
NCBP3-204ENST00000574911 ZBED9Q6R2W3 1325 aa12.3□□□□□ -0.44
NCBP3-204ENST00000574911 CCDC141Q6ZP82 1450 aa12.3□□□□□ -0.44
NCBP3-204ENST00000574911 FAM9BQ8IZU0 186 aa12.29□□□□□ -0.44
NCBP3-204ENST00000574911 ERICH6BQ5W0A0 696 aa12.28□□□□□ -0.44
NCBP3-204ENST00000574911 ZNF326Q5BKZ1 582 aaKnown RBP12.28□□□□□ -0.44
NCBP3-204ENST00000574911 RSPH4AQ5TD94 716 aa12.28□□□□□ -0.44
NCBP3-204ENST00000574911 SHROOM2Q13796 1616 aa12.27□□□□□ -0.44
NCBP3-204ENST00000574911 MAST1Q9Y2H9 1570 aa12.26□□□□□ -0.45
NCBP3-204ENST00000574911 CHD1O14646 1710 aa12.26□□□□□ -0.45
NCBP3-204ENST00000574911 ROCK2O75116 1388 aaKnown RBP12.26□□□□□ -0.45
NCBP3-204ENST00000574911 FAM135AQ9P2D6 1515 aa12.26□□□□□ -0.45
NCBP3-204ENST00000574911 IRX6P78412 446 aaPredicted RBP12.24□□□□□ -0.45
NCBP3-204ENST00000574911 CARD11Q9BXL7 1154 aa12.24□□□□□ -0.45
NCBP3-204ENST00000574911 RBM19Q9Y4C8 960 aaKnown RBP12.24□□□□□ -0.45
NCBP3-204ENST00000574911 TTC37Q6PGP7 1564 aa12.24□□□□□ -0.45
NCBP3-204ENST00000574911 UNC13BO14795 1591 aa12.23□□□□□ -0.45
NCBP3-204ENST00000574911 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.23□□□□□ -0.45
NCBP3-204ENST00000574911 SYCP2Q9BX26 1530 aa12.23□□□□□ -0.45
NCBP3-204ENST00000574911 ARHGAP5Q13017 1502 aa12.21□□□□□ -0.45
NCBP3-204ENST00000574911 ABCC2Q92887 1545 aa12.21□□□□□ -0.45
NCBP3-204ENST00000574911 DCAF11Q8TEB1 546 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms