RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 SCAPERQ9BY12 1400 aa33.26■■■□□ 2.91
CCDC40-206ENST00000572083 PLCH2O75038 1416 aa33.24■■■□□ 2.91
CCDC40-206ENST00000572083 MYO5CQ9NQX4 1742 aa33.18■■■□□ 2.9
CCDC40-206ENST00000572083 EHMT2Q96KQ7 1210 aa33.16■■■□□ 2.9
CCDC40-206ENST00000572083 ATP1B4Q9UN42 357 aaPredicted RBP33.16■■■□□ 2.9
CCDC40-206ENST00000572083 ARHGEF12Q9NZN5 1544 aa33.15■■■□□ 2.9
CCDC40-206ENST00000572083 ATP10AO60312 1499 aa33.14■■■□□ 2.9
CCDC40-206ENST00000572083 C9orf84Q5VXU9 1444 aa33.13■■■□□ 2.89
CCDC40-206ENST00000572083 KIF14Q15058 1648 aa33.13■■■□□ 2.89
CCDC40-206ENST00000572083 FMN1Q68DA7 1419 aa33.11■■■□□ 2.89
CCDC40-206ENST00000572083 PREX1Q8TCU6 1659 aa33.08■■■□□ 2.89
CCDC40-206ENST00000572083 EFCAB2Q5VUJ9 269 aa33.08■■■□□ 2.89
CCDC40-206ENST00000572083 ARHGAP35Q9NRY4 1499 aa33.07■■■□□ 2.88
CCDC40-206ENST00000572083 CERKQ8TCT0 537 aa33.06■■■□□ 2.88
CCDC40-206ENST00000572083 UBTFP17480 764 aaKnown RBP33.05■■■□□ 2.88
CCDC40-206ENST00000572083 ZNF518AQ6AHZ1 1483 aa33.05■■■□□ 2.88
CCDC40-206ENST00000572083 ARHGAP5Q13017 1502 aa33.03■■■□□ 2.88
CCDC40-206ENST00000572083 CEBPAP49715 358 aaPredicted RBP33.02■■■□□ 2.88
CCDC40-206ENST00000572083 CDK11AQ9UQ88 783 aaPredicted RBP33.02■■■□□ 2.88
CCDC40-206ENST00000572083 KDM5CP41229 1560 aa33.01■■■□□ 2.88
CCDC40-206ENST00000572083 TROQ12816 1431 aaPredicted RBP33■■■□□ 2.87
CCDC40-206ENST00000572083 LRRIQ1Q96JM4 1722 aa32.97■■■□□ 2.87
CCDC40-206ENST00000572083 AFAP1Q8N556 730 aa32.96■■■□□ 2.87
CCDC40-206ENST00000572083 DIP2CQ9Y2E4 1556 aa32.96■■■□□ 2.87
CCDC40-206ENST00000572083 CLIP1P30622 1438 aa32.94■■■□□ 2.86
CCDC40-206ENST00000572083 MYT1LQ9UL68 1186 aa32.93■■■□□ 2.86
CCDC40-206ENST00000572083 ABCA6Q8N139 1617 aa32.91■■■□□ 2.86
CCDC40-206ENST00000572083 STRCQ7RTU9 1775 aa32.91■■■□□ 2.86
CCDC40-206ENST00000572083 UHRF1BP1Q6BDS2 1440 aa32.9■■■□□ 2.86
CCDC40-206ENST00000572083 CDC42BPBQ9Y5S2 1711 aa32.9■■■□□ 2.86
CCDC40-206ENST00000572083 REREQ9P2R6 1566 aa32.87■■■□□ 2.85
CCDC40-206ENST00000572083 PREX2Q70Z35 1606 aa32.84■■■□□ 2.85
CCDC40-206ENST00000572083 C3P01024 1663 aa32.83■■■□□ 2.85
CCDC40-206ENST00000572083 ABCC1P33527 1531 aa32.82■■■□□ 2.85
CCDC40-206ENST00000572083 MLH3Q9UHC1 1453 aa32.82■■■□□ 2.84
CCDC40-206ENST00000572083 TRAPPC8Q9Y2L5 1435 aa32.8■■■□□ 2.84
CCDC40-206ENST00000572083 DMRT2Q9Y5R5 561 aa32.8■■■□□ 2.84
CCDC40-206ENST00000572083 ITSN2Q9NZM3 1697 aa32.8■■■□□ 2.84
CCDC40-206ENST00000572083 SETD1BQ9UPS6 1966 aaKnown RBP32.77■■■□□ 2.84
CCDC40-206ENST00000572083 AGLP35573 1532 aa32.76■■■□□ 2.83
CCDC40-206ENST00000572083 CCDC18Q5T9S5 1454 aa32.74■■■□□ 2.83
CCDC40-206ENST00000572083 ESF1Q9H501 851 aaKnown RBP32.72■■■□□ 2.83
CCDC40-206ENST00000572083 KIDINS220Q9ULH0 1771 aa32.72■■■□□ 2.83
CCDC40-206ENST00000572083 CASKIN1Q8WXD9 1431 aa32.71■■■□□ 2.83
CCDC40-206ENST00000572083 CDC42BPAQ5VT25 1732 aa32.7■■■□□ 2.83
CCDC40-206ENST00000572083 PTPRTO14522 1441 aa32.68■■■□□ 2.82
CCDC40-206ENST00000572083 CHIC1Q5VXU3 224 aa32.66■■■□□ 2.82
CCDC40-206ENST00000572083 DISP3Q9P2K9 1392 aa32.66■■■□□ 2.82
CCDC40-206ENST00000572083 SAMD9LQ8IVG5 1584 aa32.62■■■□□ 2.81
CCDC40-206ENST00000572083 CNTLNQ9NXG0 1405 aa32.62■■■□□ 2.81
CCDC40-206ENST00000572083 SYCP2Q9BX26 1530 aa32.59■■■□□ 2.81
CCDC40-206ENST00000572083 NCOA1Q15788 1441 aa32.59■■■□□ 2.81
CCDC40-206ENST00000572083 LTBP4Q8N2S1 1624 aa32.59■■■□□ 2.81
CCDC40-206ENST00000572083 FYCO1Q9BQS8 1478 aa32.57■■■□□ 2.8
CCDC40-206ENST00000572083 ILDR2Q71H61 639 aa32.57■■■□□ 2.8
CCDC40-206ENST00000572083 ZNF777Q9ULD5 760 aaPredicted RBP32.57■■■□□ 2.8
CCDC40-206ENST00000572083 MROH2AA6NES4 1674 aa32.56■■■□□ 2.8
CCDC40-206ENST00000572083 SUPT6HQ7KZ85 1726 aaKnown RBP32.53■■■□□ 2.8
CCDC40-206ENST00000572083 CAMSAP1Q5T5Y3 1602 aa32.52■■■□□ 2.8
CCDC40-206ENST00000572083 GPATCH8Q9UKJ3 1502 aaKnown RBP32.51■■■□□ 2.79
CCDC40-206ENST00000572083 NPATQ14207 1427 aa32.51■■■□□ 2.79
CCDC40-206ENST00000572083 SPATA31D1Q6ZQQ2 1576 aa32.5■■■□□ 2.79
CCDC40-206ENST00000572083 SPAG9O60271 1321 aaKnown RBP32.5■■■□□ 2.79
CCDC40-206ENST00000572083 ATP7AQ04656 1500 aa32.48■■■□□ 2.79
CCDC40-206ENST00000572083 HNRNPMP52272 730 aaKnown RBP eCLIP32.47■■■□□ 2.79
CCDC40-206ENST00000572083 CLTCQ00610 1675 aaKnown RBP32.46■■■□□ 2.79
CCDC40-206ENST00000572083 ZMYM3Q14202 1370 aa32.46■■■□□ 2.79
CCDC40-206ENST00000572083 IQSEC2Q5JU85 1478 aa32.46■■■□□ 2.79
CCDC40-206ENST00000572083 INO80Q9ULG1 1556 aaPredicted RBP32.45■■■□□ 2.79
CCDC40-206ENST00000572083 PLXNC1O60486 1568 aa32.44■■■□□ 2.78
CCDC40-206ENST00000572083 MYO3AQ8NEV4 1616 aa32.42■■■□□ 2.78
CCDC40-206ENST00000572083 SOCS7O14512 581 aa32.4■■■□□ 2.78
CCDC40-206ENST00000572083 ZNF142P52746 1687 aaPredicted RBP32.4■■■□□ 2.78
CCDC40-206ENST00000572083 NCKAP5LQ9HCH0 1330 aa32.39■■■□□ 2.78
CCDC40-206ENST00000572083 A2MP01023 1474 aa32.39■■■□□ 2.78
CCDC40-206ENST00000572083 KIAA1107Q9UPP5 1409 aa32.38■■■□□ 2.77
CCDC40-206ENST00000572083 PLEKHH2Q8IVE3 1493 aa32.37■■■□□ 2.77
CCDC40-206ENST00000572083 CFDP1Q9UEE9 299 aaPredicted RBP32.37■■■□□ 2.77
CCDC40-206ENST00000572083 CEP170BQ9Y4F5 1589 aaPredicted RBP32.36■■■□□ 2.77
CCDC40-206ENST00000572083 CCNB3Q8WWL7 1395 aa32.35■■■□□ 2.77
CCDC40-206ENST00000572083 ZNF335Q9H4Z2 1342 aaPredicted RBP32.34■■■□□ 2.77
CCDC40-206ENST00000572083 PTPRKQ15262 1439 aa32.33■■■□□ 2.77
CCDC40-206ENST00000572083 GGT6Q6P531 493 aa32.32■■■□□ 2.76
CCDC40-206ENST00000572083 PLA2R1Q13018 1463 aa32.31■■■□□ 2.76
CCDC40-206ENST00000572083 ADGBQ8N7X0 1667 aa32.29■■■□□ 2.76
CCDC40-206ENST00000572083 MTUS2Q5JR59 1369 aa32.28■■■□□ 2.76
CCDC40-206ENST00000572083 TCOF1Q13428 1488 aaKnown RBP32.28■■■□□ 2.76
CCDC40-206ENST00000572083 PKD2Q13563 968 aa32.25■■■□□ 2.75
CCDC40-206ENST00000572083 TIAM1Q13009 1591 aa32.24■■■□□ 2.75
CCDC40-206ENST00000572083 UBAP1LF5GYI3 381 aa32.23■■■□□ 2.75
CCDC40-206ENST00000572083 ZNF644Q9H582 1327 aaPredicted RBP32.23■■■□□ 2.75
CCDC40-206ENST00000572083 MBD5Q9P267 1494 aa32.17■■■□□ 2.74
CCDC40-206ENST00000572083 EHBP1L1Q8N3D4 1523 aa32.17■■■□□ 2.74
CCDC40-206ENST00000572083 A2ML1A8K2U0 1454 aa32.16■■■□□ 2.74
CCDC40-206ENST00000572083 DNMT1P26358 1616 aaKnown RBP32.16■■■□□ 2.74
CCDC40-206ENST00000572083 PPP6R1Q9UPN7 881 aa32.16■■■□□ 2.74
CCDC40-206ENST00000572083 RTEL1-TNFRSF6BF6WH68 1400 aa32.11■■■□□ 2.73
CCDC40-206ENST00000572083 POLR1AO95602 1720 aaPredicted RBP32.09■■■□□ 2.73
CCDC40-206ENST00000572083 DHX29Q7Z478 1369 aaKnown RBP32.09■■■□□ 2.73
CCDC40-206ENST00000572083 CEP162Q5TB80 1403 aa32.08■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms