RNA–Protein interactions for RNA: ENST00000569440.5

BBS4-218, Transcript of Bardet-Biedl syndrome 4, human

TSL 4

Gene BBS4, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BBS4-218	ENST00000569440	ARID3C	A6NKF2	412 aa		11.13	□□□□□ -0.63
BBS4-218	ENST00000569440	RAPGEF2	Q9Y4G8	1499 aa		11.12	□□□□□ -0.63
BBS4-218	ENST00000569440	SUPT5H	O00267	1087 aa	Known RBP	11.11	□□□□□ -0.63
BBS4-218	ENST00000569440	GOLGA3	Q08378	1498 aa		11.11	□□□□□ -0.63
BBS4-218	ENST00000569440	MAGI2	Q86UL8	1455 aa		11.11	□□□□□ -0.63
BBS4-218	ENST00000569440	ARHGEF12	Q9NZN5	1544 aa		11.1	□□□□□ -0.63
BBS4-218	ENST00000569440	HSPA1L	P34931	641 aa		11.09	□□□□□ -0.63
BBS4-218	ENST00000569440	PREX1	Q8TCU6	1659 aa		11.08	□□□□□ -0.64
BBS4-218	ENST00000569440	MED1	Q15648	1581 aa	Predicted RBP	11.08	□□□□□ -0.64
BBS4-218	ENST00000569440	SIGLEC1	Q9BZZ2	1709 aa		11.08	□□□□□ -0.64
BBS4-218	ENST00000569440	ZMYM4	Q5VZL5	1548 aa		11.08	□□□□□ -0.64
BBS4-218	ENST00000569440	ZFYVE16	Q7Z3T8	1539 aa		11.08	□□□□□ -0.64
BBS4-218	ENST00000569440	NCOA1	Q15788	1441 aa		11.07	□□□□□ -0.64
BBS4-218	ENST00000569440	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	11.07	□□□□□ -0.64
BBS4-218	ENST00000569440	NPM3	O75607	178 aa	Known RBP	11.06	□□□□□ -0.64
BBS4-218	ENST00000569440	EFCAB5	A4FU69	1503 aa		11.05	□□□□□ -0.64
BBS4-218	ENST00000569440	FAM9A	Q8IZU1	332 aa	Predicted RBP	11.05	□□□□□ -0.64
BBS4-218	ENST00000569440	ATP10A	O60312	1499 aa		11.04	□□□□□ -0.64
BBS4-218	ENST00000569440	RNF216	Q9NWF9	866 aa	Predicted RBP	11.03	□□□□□ -0.64
BBS4-218	ENST00000569440	RICTOR	Q6R327	1708 aa		11.03	□□□□□ -0.64
BBS4-218	ENST00000569440	C9orf84	Q5VXU9	1444 aa		11.01	□□□□□ -0.65
BBS4-218	ENST00000569440	TRAPPC8	Q9Y2L5	1435 aa		11.01	□□□□□ -0.65
BBS4-218	ENST00000569440	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	11.01	□□□□□ -0.65
BBS4-218	ENST00000569440	HOXD11	P31277	338 aa	Predicted RBP	11.01	□□□□□ -0.65
BBS4-218	ENST00000569440	HNRNPUL2	Q1KMD3	747 aa	Known RBP	11.01	□□□□□ -0.65
BBS4-218	ENST00000569440	FER1L4	A9Z1Z3	1794 aa		11	□□□□□ -0.65
BBS4-218	ENST00000569440	NCKAP5L	Q9HCH0	1330 aa		11	□□□□□ -0.65
BBS4-218	ENST00000569440	HECW1	Q76N89	1606 aa		10.99	□□□□□ -0.65
BBS4-218	ENST00000569440	PIP4K2B	P78356	416 aa		10.99	□□□□□ -0.65
BBS4-218	ENST00000569440	P3H3	Q8IVL6	736 aa		10.99	□□□□□ -0.65
BBS4-218	ENST00000569440	SCAPER	Q9BY12	1400 aa		10.99	□□□□□ -0.65
BBS4-218	ENST00000569440	PLEKHD1	A6NEE1	506 aa		10.98	□□□□□ -0.65
BBS4-218	ENST00000569440	TOM1	O60784	492 aa		10.98	□□□□□ -0.65
BBS4-218	ENST00000569440	RGS17	Q9UGC6	210 aa	Predicted RBP	10.98	□□□□□ -0.65
BBS4-218	ENST00000569440	PKD2	Q13563	968 aa		10.96	□□□□□ -0.65
BBS4-218	ENST00000569440	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	10.94	□□□□□ -0.66
BBS4-218	ENST00000569440	NUP153	P49790	1475 aa	Known RBP	10.93	□□□□□ -0.66
BBS4-218	ENST00000569440	PLCH2	O75038	1416 aa		10.92	□□□□□ -0.66
BBS4-218	ENST00000569440	CAMSAP1	Q5T5Y3	1602 aa		10.92	□□□□□ -0.66
BBS4-218	ENST00000569440	CFAP74	Q9C0B2	1584 aa		10.92	□□□□□ -0.66
BBS4-218	ENST00000569440	SETD1B	Q9UPS6	1966 aa	Known RBP	10.92	□□□□□ -0.66
BBS4-218	ENST00000569440	ESF1	Q9H501	851 aa	Known RBP	10.91	□□□□□ -0.66
BBS4-218	ENST00000569440	TCOF1	Q13428	1488 aa	Known RBP	10.9	□□□□□ -0.66
BBS4-218	ENST00000569440	AFAP1	Q8N556	730 aa		10.9	□□□□□ -0.66
BBS4-218	ENST00000569440	NPAT	Q14207	1427 aa		10.9	□□□□□ -0.66
BBS4-218	ENST00000569440	PLA2R1	Q13018	1463 aa		10.89	□□□□□ -0.67
BBS4-218	ENST00000569440	EFCAB2	Q5VUJ9	269 aa		10.89	□□□□□ -0.67
BBS4-218	ENST00000569440	CNTLN	Q9NXG0	1405 aa		10.88	□□□□□ -0.67
BBS4-218	ENST00000569440	RAPGEF6	Q8TEU7	1601 aa		10.87	□□□□□ -0.67
BBS4-218	ENST00000569440	PRX	Q9BXM0	1461 aa		10.87	□□□□□ -0.67
BBS4-218	ENST00000569440	POTEA	Q6S8J7	498 aa		10.87	□□□□□ -0.67
BBS4-218	ENST00000569440	AGL	P35573	1532 aa		10.87	□□□□□ -0.67
BBS4-218	ENST00000569440	PTPRK	Q15262	1439 aa		10.86	□□□□□ -0.67
BBS4-218	ENST00000569440	ZMYM3	Q14202	1370 aa		10.86	□□□□□ -0.67
BBS4-218	ENST00000569440	RERE	Q9P2R6	1566 aa		10.86	□□□□□ -0.67
BBS4-218	ENST00000569440	C3	P01024	1663 aa		10.85	□□□□□ -0.67
BBS4-218	ENST00000569440	ZNF518A	Q6AHZ1	1483 aa		10.85	□□□□□ -0.67
BBS4-218	ENST00000569440	CTTNBP2	Q8WZ74	1663 aa		10.85	□□□□□ -0.67
BBS4-218	ENST00000569440	CPS1	P31327	1500 aa		10.84	□□□□□ -0.67
BBS4-218	ENST00000569440	DCAF8L1	A6NGE4	600 aa		10.84	□□□□□ -0.67
BBS4-218	ENST00000569440	ALK	Q9UM73	1620 aa		10.84	□□□□□ -0.67
BBS4-218	ENST00000569440	SHANK2	Q9UPX8	1470 aa		10.83	□□□□□ -0.68
BBS4-218	ENST00000569440	MLH3	Q9UHC1	1453 aa		10.82	□□□□□ -0.68
BBS4-218	ENST00000569440	MYT1L	Q9UL68	1186 aa		10.82	□□□□□ -0.68
BBS4-218	ENST00000569440	KDM5C	P41229	1560 aa		10.82	□□□□□ -0.68
BBS4-218	ENST00000569440	SAMD9	Q5K651	1589 aa		10.81	□□□□□ -0.68
BBS4-218	ENST00000569440	DIP2C	Q9Y2E4	1556 aa		10.81	□□□□□ -0.68
BBS4-218	ENST00000569440	UPF1	Q92900	1129 aa	Known RBP eCLIP	10.77	□□□□□ -0.69
BBS4-218	ENST00000569440	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	10.75	□□□□□ -0.69
BBS4-218	ENST00000569440	ABCA6	Q8N139	1617 aa		10.73	□□□□□ -0.69
BBS4-218	ENST00000569440	A2ML1	A8K2U0	1454 aa		10.72	□□□□□ -0.69
BBS4-218	ENST00000569440	VWDE	Q8N2E2	1590 aa		10.72	□□□□□ -0.69
BBS4-218	ENST00000569440	ZNF142	P52746	1687 aa	Predicted RBP	10.72	□□□□□ -0.69
BBS4-218	ENST00000569440	CDK13	Q14004	1512 aa	Known RBP	10.71	□□□□□ -0.69
BBS4-218	ENST00000569440	ANKLE2	Q86XL3	938 aa		10.71	□□□□□ -0.69
BBS4-218	ENST00000569440	MROH2A	A6NES4	1674 aa		10.7	□□□□□ -0.7
BBS4-218	ENST00000569440	MYO3A	Q8NEV4	1616 aa		10.7	□□□□□ -0.7
BBS4-218	ENST00000569440	NEURL4	Q96JN8	1562 aa		10.7	□□□□□ -0.7
BBS4-218	ENST00000569440	ARHGAP5	Q13017	1502 aa		10.69	□□□□□ -0.7
BBS4-218	ENST00000569440	LRRC7	Q96NW7	1537 aa		10.69	□□□□□ -0.7
BBS4-218	ENST00000569440	RANGAP1	P46060	587 aa	Predicted RBP	10.69	□□□□□ -0.7
BBS4-218	ENST00000569440	CDK11A	Q9UQ88	783 aa	Predicted RBP	10.69	□□□□□ -0.7
BBS4-218	ENST00000569440	MED14	O60244	1454 aa		10.68	□□□□□ -0.7
BBS4-218	ENST00000569440	SRCAP	Q6ZRS2	3230 aa		10.67	□□□□□ -0.7
BBS4-218	ENST00000569440	FAM135B	Q49AJ0	1406 aa		10.67	□□□□□ -0.7
BBS4-218	ENST00000569440	DNMT1	P26358	1616 aa	Known RBP	10.67	□□□□□ -0.7
BBS4-218	ENST00000569440	NPHP4	O75161	1426 aa	Predicted RBP	10.67	□□□□□ -0.7
BBS4-218	ENST00000569440	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	10.66	□□□□□ -0.7
BBS4-218	ENST00000569440	GGT6	Q6P531	493 aa		10.66	□□□□□ -0.7
BBS4-218	ENST00000569440	THEMIS	Q8N1K5	641 aa	Predicted RBP	10.66	□□□□□ -0.7
BBS4-218	ENST00000569440	SLC4A1AP	Q9BWU0	796 aa	Known RBP	10.65	□□□□□ -0.7
BBS4-218	ENST00000569440	TRO	Q12816	1431 aa	Predicted RBP	10.65	□□□□□ -0.7
BBS4-218	ENST00000569440	FBXO31	Q5XUX0	539 aa	Predicted RBP	10.64	□□□□□ -0.71
BBS4-218	ENST00000569440	CSRNP3	Q8WYN3	585 aa		10.64	□□□□□ -0.71
BBS4-218	ENST00000569440	TNR	Q92752	1358 aa		10.63	□□□□□ -0.71
BBS4-218	ENST00000569440	ABCC1	P33527	1531 aa		10.63	□□□□□ -0.71
BBS4-218	ENST00000569440	KIDINS220	Q9ULH0	1771 aa		10.62	□□□□□ -0.71
BBS4-218	ENST00000569440	SPAG9	O60271	1321 aa	Known RBP	10.62	□□□□□ -0.71
BBS4-218	ENST00000569440	MYO5C	Q9NQX4	1742 aa		10.62	□□□□□ -0.71
BBS4-218	ENST00000569440	KIF14	Q15058	1648 aa		10.61	□□□□□ -0.71

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