RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 PLIN1O60240 522 aa14.96□□□□□ -0.01
CLN3-238ENST00000569430 POLA1P09884 1462 aaPredicted RBP14.95□□□□□ -0.02
CLN3-238ENST00000569430 TSPY4P0CV99 314 aa14.95□□□□□ -0.02
CLN3-238ENST00000569430 TSPY10P0CW01 314 aa14.95□□□□□ -0.02
CLN3-238ENST00000569430 DCAF11Q8TEB1 546 aa14.94□□□□□ -0.02
CLN3-238ENST00000569430 CFDP1Q9UEE9 299 aaPredicted RBP14.94□□□□□ -0.02
CLN3-238ENST00000569430 AKNAQ7Z591 1439 aa14.92□□□□□ -0.02
CLN3-238ENST00000569430 TIAM1Q13009 1591 aa14.92□□□□□ -0.02
CLN3-238ENST00000569430 PKD2Q13563 968 aa14.92□□□□□ -0.02
CLN3-238ENST00000569430 KIF7Q2M1P5 1343 aa14.91□□□□□ -0.02
CLN3-238ENST00000569430 CCDC7Q96M83 1385 aa14.91□□□□□ -0.02
CLN3-238ENST00000569430 PCF11O94913 1555 aaKnown RBP14.91□□□□□ -0.02
CLN3-238ENST00000569430 TOPBP1Q92547 1522 aa14.9□□□□□ -0.02
CLN3-238ENST00000569430 PRKCSHP14314 528 aaPredicted RBP14.9□□□□□ -0.02
CLN3-238ENST00000569430 HSP90AA1P07900 732 aaKnown RBP14.89□□□□□ -0.03
CLN3-238ENST00000569430 MAPKBP1O60336 1514 aa14.88□□□□□ -0.03
CLN3-238ENST00000569430 RRP1P56182 461 aaKnown RBP14.88□□□□□ -0.03
CLN3-238ENST00000569430 GLIPR1L2Q4G1C9 344 aa14.88□□□□□ -0.03
CLN3-238ENST00000569430 C11orf95C9JLR9 678 aaPredicted RBP14.88□□□□□ -0.03
CLN3-238ENST00000569430 BECN1Q14457 450 aa14.88□□□□□ -0.03
CLN3-238ENST00000569430 NEUROD2Q15784 382 aa14.87□□□□□ -0.03
CLN3-238ENST00000569430 CNTLNQ9NXG0 1405 aa14.87□□□□□ -0.03
CLN3-238ENST00000569430 UACAQ9BZF9 1416 aa14.87□□□□□ -0.03
CLN3-238ENST00000569430 SLKQ9H2G2 1235 aaPredicted RBP14.87□□□□□ -0.03
CLN3-238ENST00000569430 ZNF644Q9H582 1327 aaPredicted RBP14.87□□□□□ -0.03
CLN3-238ENST00000569430 AQRO60306 1485 aaKnown RBP eCLIP14.86□□□□□ -0.036e-6■■■■□ 25.1
CLN3-238ENST00000569430 SPRYD3Q8NCJ5 442 aa14.86□□□□□ -0.03
CLN3-238ENST00000569430 NAP1L5Q96NT1 182 aaPredicted RBP14.85□□□□□ -0.03
CLN3-238ENST00000569430 FGD6Q6ZV73 1430 aa14.85□□□□□ -0.03
CLN3-238ENST00000569430 GSE1Q14687 1217 aa14.85□□□□□ -0.03
CLN3-238ENST00000569430 USP35Q9P2H5 1018 aa14.85□□□□□ -0.03
CLN3-238ENST00000569430 ST20-MTHFSA0A0A6YYL1 179 aa14.85□□□□□ -0.03
CLN3-238ENST00000569430 FRAT1Q92837 279 aaPredicted RBP14.84□□□□□ -0.03
CLN3-238ENST00000569430 BRPF3Q9ULD4 1205 aa14.84□□□□□ -0.03
CLN3-238ENST00000569430 PTPRKQ15262 1439 aa14.84□□□□□ -0.03
CLN3-238ENST00000569430 KNSTRNQ9Y448 316 aa14.84□□□□□ -0.03
CLN3-238ENST00000569430 NBPF8Q3BBV2 869 aa14.84□□□□□ -0.03
CLN3-238ENST00000569430 CRBNQ96SW2 442 aa14.82□□□□□ -0.04
CLN3-238ENST00000569430 URB2Q14146 1524 aaKnown RBP14.81□□□□□ -0.04
CLN3-238ENST00000569430 RALBP1Q15311 655 aa14.81□□□□□ -0.04
CLN3-238ENST00000569430 GAPVD1Q14C86 1478 aa14.8□□□□□ -0.04
CLN3-238ENST00000569430 PDS5BQ9NTI5 1447 aa14.8□□□□□ -0.04
CLN3-238ENST00000569430 GZF1Q9H116 711 aaPredicted RBP14.8□□□□□ -0.04
CLN3-238ENST00000569430 NLRP13Q86W25 1043 aa14.8□□□□□ -0.04
CLN3-238ENST00000569430 SKAP1Q86WV1 359 aa14.79□□□□□ -0.04
CLN3-238ENST00000569430 KTN1Q86UP2 1357 aaKnown RBP14.79□□□□□ -0.04
CLN3-238ENST00000569430 CDCA7LQ96GN5 454 aa14.79□□□□□ -0.04
CLN3-238ENST00000569430 USP47Q96K76 1375 aa14.78□□□□□ -0.04
CLN3-238ENST00000569430 NFKBIBQ15653 356 aa14.78□□□□□ -0.04
CLN3-238ENST00000569430 ARID4BQ4LE39 1312 aaPredicted RBP14.78□□□□□ -0.04
CLN3-238ENST00000569430 CHGAP10645 457 aaKnown RBP14.77□□□□□ -0.04
CLN3-238ENST00000569430 CASKIN1Q8WXD9 1431 aa14.76□□□□□ -0.05
CLN3-238ENST00000569430 ANP32BQ92688 251 aaKnown RBP14.76□□□□□ -0.05
CLN3-238ENST00000569430 MYBBP1AQ9BQG0 1328 aaKnown RBP14.76□□□□□ -0.05
CLN3-238ENST00000569430 ABCA10Q8WWZ4 1543 aa14.76□□□□□ -0.05
CLN3-238ENST00000569430 TNNT2P45379 298 aaPredicted RBP14.75□□□□□ -0.05
CLN3-238ENST00000569430 PLEKHD1A6NEE1 506 aa14.75□□□□□ -0.05
CLN3-238ENST00000569430 DNMBPQ6XZF7 1577 aa14.75□□□□□ -0.05
CLN3-238ENST00000569430 NCOA2Q15596 1464 aa14.74□□□□□ -0.05
CLN3-238ENST00000569430 PDE3BQ13370 1112 aa14.74□□□□□ -0.05
CLN3-238ENST00000569430 TRIM44Q96DX7 344 aaPredicted RBP14.74□□□□□ -0.05
CLN3-238ENST00000569430 MS4A1P11836 297 aa14.74□□□□□ -0.05
CLN3-238ENST00000569430 PNISRQ8TF01 805 aaKnown RBP14.73□□□□□ -0.05
CLN3-238ENST00000569430 CHMP7Q8WUX9 453 aaPredicted RBP14.73□□□□□ -0.05
CLN3-238ENST00000569430 NUP155O75694 1391 aa14.73□□□□□ -0.05
CLN3-238ENST00000569430 BACH2Q9BYV9 841 aa14.73□□□□□ -0.05
CLN3-238ENST00000569430 ROCK2O75116 1388 aaKnown RBP14.72□□□□□ -0.05
CLN3-238ENST00000569430 KIF15Q9NS87 1388 aa14.72□□□□□ -0.05
CLN3-238ENST00000569430 SENP3Q9H4L4 574 aaPredicted RBP14.72□□□□□ -0.05
CLN3-238ENST00000569430 CCDC146Q8IYE0 955 aa14.71□□□□□ -0.05
CLN3-238ENST00000569430 TMF1P82094 1093 aa14.71□□□□□ -0.05
CLN3-238ENST00000569430 MYOM3Q5VTT5 1437 aa14.71□□□□□ -0.05
CLN3-238ENST00000569430 FYCO1Q9BQS8 1478 aa14.7□□□□□ -0.06
CLN3-238ENST00000569430 CDK13Q14004 1512 aaKnown RBP14.7□□□□□ -0.06
CLN3-238ENST00000569430 FAM161AQ3B820 660 aa14.7□□□□□ -0.06
CLN3-238ENST00000569430 HFM1A2PYH4 1435 aa14.69□□□□□ -0.06
CLN3-238ENST00000569430 FRAT2O75474 233 aaPredicted RBP14.69□□□□□ -0.06
CLN3-238ENST00000569430 SMG6Q86US8 1419 aaKnown RBP14.68□□□□□ -0.06
CLN3-238ENST00000569430 PANK3Q9H999 370 aa14.68□□□□□ -0.06
CLN3-238ENST00000569430 NAIPQ13075 1403 aa14.68□□□□□ -0.06
CLN3-238ENST00000569430 GOLGA2Q08379 1002 aa14.67□□□□□ -0.06
CLN3-238ENST00000569430 L1TD1Q5T7N2 865 aaKnown RBP14.67□□□□□ -0.06
CLN3-238ENST00000569430 PNNQ9H307 717 aaKnown RBP14.67□□□□□ -0.06
CLN3-238ENST00000569430 CENPQQ7L2Z9 268 aaPredicted RBP14.66□□□□□ -0.06
CLN3-238ENST00000569430 FTSJ3Q8IY81 847 aaKnown RBP14.65□□□□□ -0.06
CLN3-238ENST00000569430 NCLP19338 710 aaKnown RBP14.65□□□□□ -0.06
CLN3-238ENST00000569430 CLUAP1Q96AJ1 413 aa14.65□□□□□ -0.06
CLN3-238ENST00000569430 ZNF608Q9ULD9 1512 aaPredicted RBP14.64□□□□□ -0.07
CLN3-238ENST00000569430 SNAPC4Q5SXM2 1469 aa14.63□□□□□ -0.07
CLN3-238ENST00000569430 CDCA8Q53HL2 280 aa14.61□□□□□ -0.07
CLN3-238ENST00000569430 RSPH6AQ9H0K4 717 aa14.6□□□□□ -0.07
CLN3-238ENST00000569430 MAGI3Q5TCQ9 1506 aa14.6□□□□□ -0.07
CLN3-238ENST00000569430 MAP3K1Q13233 1512 aa14.6□□□□□ -0.07
CLN3-238ENST00000569430 GOLGA6L3A6NEY3 463 aa14.6□□□□□ -0.07
CLN3-238ENST00000569430 ERCC6Q03468 1493 aa14.59□□□□□ -0.07
CLN3-238ENST00000569430 HNRNPMP52272 730 aaKnown RBP eCLIP14.59□□□□□ -0.07
CLN3-238ENST00000569430 BCL2L13Q9BXK5 485 aa14.59□□□□□ -0.07
CLN3-238ENST00000569430 COG6Q9Y2V7 657 aa14.59□□□□□ -0.07
CLN3-238ENST00000569430 ANKRD30AQ9BXX3 1397 aa14.58□□□□□ -0.08
CLN3-238ENST00000569430 ADAMTS8Q9UP79 889 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms