RNA–Protein interactions for RNA: ENST00000567071.5

CAPN3-216, Transcript of calpain 3, humanhuman

TSL 4

Gene CAPN3, Length 563 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-216ENST00000567071 ATP10BO94823 1461 aa17.06■□□□□ 0.32
CAPN3-216ENST00000567071 ZMYM4Q5VZL5 1548 aa17.06■□□□□ 0.32
CAPN3-216ENST00000567071 MED1Q15648 1581 aaPredicted RBP17.05■□□□□ 0.32
CAPN3-216ENST00000567071 MAGI2Q86UL8 1455 aa17.05■□□□□ 0.32
CAPN3-216ENST00000567071 SIGLEC1Q9BZZ2 1709 aa17.04■□□□□ 0.32
CAPN3-216ENST00000567071 ARHGEF12Q9NZN5 1544 aa17.03■□□□□ 0.32
CAPN3-216ENST00000567071 CEBPAP49715 358 aaPredicted RBP17.03■□□□□ 0.32
CAPN3-216ENST00000567071 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.02■□□□□ 0.32
CAPN3-216ENST00000567071 HNRNPUL2Q1KMD3 747 aaKnown RBP17.02■□□□□ 0.32
CAPN3-216ENST00000567071 HECW1Q76N89 1606 aa16.95■□□□□ 0.3
CAPN3-216ENST00000567071 SCAF1Q9H7N4 1312 aaKnown RBP16.95■□□□□ 0.3
CAPN3-216ENST00000567071 ATP10AO60312 1499 aa16.94■□□□□ 0.3
CAPN3-216ENST00000567071 C9orf84Q5VXU9 1444 aa16.94■□□□□ 0.3
CAPN3-216ENST00000567071 NCOA1Q15788 1441 aa16.92■□□□□ 0.3
CAPN3-216ENST00000567071 HSPA1LP34931 641 aa16.9■□□□□ 0.3
CAPN3-216ENST00000567071 ESF1Q9H501 851 aaKnown RBP16.9■□□□□ 0.3
CAPN3-216ENST00000567071 RAPGEF6Q8TEU7 1601 aa16.89■□□□□ 0.29
CAPN3-216ENST00000567071 ZNF335Q9H4Z2 1342 aaPredicted RBP16.88■□□□□ 0.29
CAPN3-216ENST00000567071 PLEKHD1A6NEE1 506 aa16.87■□□□□ 0.29
CAPN3-216ENST00000567071 P3H3Q8IVL6 736 aa16.87■□□□□ 0.29
CAPN3-216ENST00000567071 C3P01024 1663 aa16.86■□□□□ 0.29
CAPN3-216ENST00000567071 PIP4K2BP78356 416 aa16.86■□□□□ 0.29
CAPN3-216ENST00000567071 TRAPPC8Q9Y2L5 1435 aa16.86■□□□□ 0.29
CAPN3-216ENST00000567071 SCAPERQ9BY12 1400 aa16.85■□□□□ 0.29
CAPN3-216ENST00000567071 CAMSAP1Q5T5Y3 1602 aa16.84■□□□□ 0.29
CAPN3-216ENST00000567071 TOM1O60784 492 aa16.83■□□□□ 0.28
CAPN3-216ENST00000567071 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.82■□□□□ 0.28
CAPN3-216ENST00000567071 MYT1LQ9UL68 1186 aa16.8■□□□□ 0.28
CAPN3-216ENST00000567071 NCKAP5LQ9HCH0 1330 aa16.78■□□□□ 0.28
CAPN3-216ENST00000567071 PKD2Q13563 968 aa16.77■□□□□ 0.28
CAPN3-216ENST00000567071 NUP153P49790 1475 aaKnown RBP16.77■□□□□ 0.28
CAPN3-216ENST00000567071 CNTLNQ9NXG0 1405 aa16.75■□□□□ 0.27
CAPN3-216ENST00000567071 ZNF518AQ6AHZ1 1483 aa16.73■□□□□ 0.27
CAPN3-216ENST00000567071 SUPT6HQ7KZ85 1726 aaKnown RBP16.73■□□□□ 0.27
CAPN3-216ENST00000567071 PPP6R1Q9UPN7 881 aa16.73■□□□□ 0.27
CAPN3-216ENST00000567071 NPATQ14207 1427 aa16.72■□□□□ 0.27
CAPN3-216ENST00000567071 REREQ9P2R6 1566 aa16.72■□□□□ 0.27
CAPN3-216ENST00000567071 PLCH2O75038 1416 aa16.71■□□□□ 0.27
CAPN3-216ENST00000567071 AGLP35573 1532 aa16.71■□□□□ 0.27
CAPN3-216ENST00000567071 EFCAB2Q5VUJ9 269 aa16.71■□□□□ 0.27
CAPN3-216ENST00000567071 PLA2R1Q13018 1463 aa16.71■□□□□ 0.27
CAPN3-216ENST00000567071 SAMD9Q5K651 1589 aa16.71■□□□□ 0.27
CAPN3-216ENST00000567071 CPS1P31327 1500 aa16.69■□□□□ 0.26
CAPN3-216ENST00000567071 PTPRKQ15262 1439 aa16.69■□□□□ 0.26
CAPN3-216ENST00000567071 DIP2CQ9Y2E4 1556 aa16.68■□□□□ 0.26
CAPN3-216ENST00000567071 KDM5CP41229 1560 aa16.66■□□□□ 0.26
CAPN3-216ENST00000567071 MYO5CQ9NQX4 1742 aa16.66■□□□□ 0.26
CAPN3-216ENST00000567071 TCOF1Q13428 1488 aaKnown RBP16.66■□□□□ 0.26
CAPN3-216ENST00000567071 MROH2AA6NES4 1674 aa16.65■□□□□ 0.26
CAPN3-216ENST00000567071 ZNF142P52746 1687 aaPredicted RBP16.65■□□□□ 0.26
CAPN3-216ENST00000567071 PRXQ9BXM0 1461 aa16.65■□□□□ 0.26
CAPN3-216ENST00000567071 AFAP1Q8N556 730 aa16.63■□□□□ 0.25
CAPN3-216ENST00000567071 ABCA6Q8N139 1617 aa16.62■□□□□ 0.25
CAPN3-216ENST00000567071 CEP170BQ9Y4F5 1589 aaPredicted RBP16.61■□□□□ 0.25
CAPN3-216ENST00000567071 MYO3AQ8NEV4 1616 aa16.61■□□□□ 0.25
CAPN3-216ENST00000567071 ZMYM3Q14202 1370 aa16.59■□□□□ 0.25
CAPN3-216ENST00000567071 MLH3Q9UHC1 1453 aa16.59■□□□□ 0.25
CAPN3-216ENST00000567071 SHANK2Q9UPX8 1470 aa16.59■□□□□ 0.25
CAPN3-216ENST00000567071 RGS17Q9UGC6 210 aaPredicted RBP16.58■□□□□ 0.24
CAPN3-216ENST00000567071 ARHGAP5Q13017 1502 aa16.57■□□□□ 0.24
CAPN3-216ENST00000567071 POLR1AO95602 1720 aaPredicted RBP16.54■□□□□ 0.24
CAPN3-216ENST00000567071 CDK13Q14004 1512 aaKnown RBP16.54■□□□□ 0.24
CAPN3-216ENST00000567071 RANGAP1P46060 587 aaPredicted RBP16.53■□□□□ 0.24
CAPN3-216ENST00000567071 CDK11AQ9UQ88 783 aaPredicted RBP16.51■□□□□ 0.23
CAPN3-216ENST00000567071 KIF14Q15058 1648 aa16.5■□□□□ 0.23
CAPN3-216ENST00000567071 POTEAQ6S8J7 498 aa16.5■□□□□ 0.23
CAPN3-216ENST00000567071 CLTCQ00610 1675 aaKnown RBP16.5■□□□□ 0.23
CAPN3-216ENST00000567071 ALKQ9UM73 1620 aa16.49■□□□□ 0.23
CAPN3-216ENST00000567071 A2ML1A8K2U0 1454 aa16.48■□□□□ 0.23
CAPN3-216ENST00000567071 RNF17Q9BXT8 1623 aaKnown RBP16.47■□□□□ 0.23
CAPN3-216ENST00000567071 SETD1AO15047 1707 aaKnown RBP16.47■□□□□ 0.23
CAPN3-216ENST00000567071 DNMT1P26358 1616 aaKnown RBP16.46■□□□□ 0.23
CAPN3-216ENST00000567071 KIDINS220Q9ULH0 1771 aa16.46■□□□□ 0.22
CAPN3-216ENST00000567071 VWDEQ8N2E2 1590 aa16.44■□□□□ 0.22
CAPN3-216ENST00000567071 NEURL4Q96JN8 1562 aa16.44■□□□□ 0.22
CAPN3-216ENST00000567071 ATP1B4Q9UN42 357 aaPredicted RBP16.44■□□□□ 0.22
CAPN3-216ENST00000567071 CLIP1P30622 1438 aa16.44■□□□□ 0.22
CAPN3-216ENST00000567071 ANKLE2Q86XL3 938 aa16.43■□□□□ 0.22
CAPN3-216ENST00000567071 ITSN2Q9NZM3 1697 aa16.43■□□□□ 0.22
CAPN3-216ENST00000567071 ABCC1P33527 1531 aa16.42■□□□□ 0.22
CAPN3-216ENST00000567071 SYNMO15061 1565 aa16.4■□□□□ 0.22
CAPN3-216ENST00000567071 CDC42BPBQ9Y5S2 1711 aa16.39■□□□□ 0.21
CAPN3-216ENST00000567071 TROQ12816 1431 aaPredicted RBP16.38■□□□□ 0.21
CAPN3-216ENST00000567071 LRRC7Q96NW7 1537 aa16.37■□□□□ 0.21
CAPN3-216ENST00000567071 GGT6Q6P531 493 aa16.37■□□□□ 0.21
CAPN3-216ENST00000567071 UPF1Q92900 1129 aaKnown RBP eCLIP16.37■□□□□ 0.21
CAPN3-216ENST00000567071 NPHP4O75161 1426 aaPredicted RBP16.36■□□□□ 0.21
CAPN3-216ENST00000567071 PREX2Q70Z35 1606 aa16.36■□□□□ 0.21
CAPN3-216ENST00000567071 THEMISQ8N1K5 641 aaPredicted RBP16.35■□□□□ 0.21
CAPN3-216ENST00000567071 SPAG9O60271 1321 aaKnown RBP16.34■□□□□ 0.21
CAPN3-216ENST00000567071 DEPDC5O75140 1603 aa16.34■□□□□ 0.21
CAPN3-216ENST00000567071 TNRQ92752 1358 aa16.33■□□□□ 0.2
CAPN3-216ENST00000567071 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.33■□□□□ 0.2
CAPN3-216ENST00000567071 MED14O60244 1454 aa16.33■□□□□ 0.2
CAPN3-216ENST00000567071 SAMD9LQ8IVG5 1584 aa16.33■□□□□ 0.2
CAPN3-216ENST00000567071 IQGAP1P46940 1657 aa16.33■□□□□ 0.2
CAPN3-216ENST00000567071 SRCAPQ6ZRS2 3230 aa16.32■□□□□ 0.2
CAPN3-216ENST00000567071 CSRNP3Q8WYN3 585 aa16.32■□□□□ 0.2
CAPN3-216ENST00000567071 FAM135AQ9P2D6 1515 aa16.3■□□□□ 0.2
CAPN3-216ENST00000567071 A2MP01023 1474 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms