RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 PTPN23Q9H3S7 1636 aa19.01■□□□□ 0.63
VPS4A-204ENST00000566354 ABCC10Q5T3U5 1492 aa19.01■□□□□ 0.63
VPS4A-204ENST00000566354 KCNH8Q96L42 1107 aa19.01■□□□□ 0.63
VPS4A-204ENST00000566354 RAB3GAP2Q9H2M9 1393 aa19■□□□□ 0.63
VPS4A-204ENST00000566354 GPATCH8Q9UKJ3 1502 aaKnown RBP19■□□□□ 0.63
VPS4A-204ENST00000566354 MIA2Q96PC5 1412 aa18.98■□□□□ 0.63
VPS4A-204ENST00000566354 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.98■□□□□ 0.63
VPS4A-204ENST00000566354 CDC42BPAQ5VT25 1732 aa18.97■□□□□ 0.63
VPS4A-204ENST00000566354 ITSN2Q9NZM3 1697 aa18.96■□□□□ 0.63
VPS4A-204ENST00000566354 TTC37Q6PGP7 1564 aa18.96■□□□□ 0.63
VPS4A-204ENST00000566354 ZNF644Q9H582 1327 aaPredicted RBP18.96■□□□□ 0.63
VPS4A-204ENST00000566354 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.96■□□□□ 0.63
VPS4A-204ENST00000566354 NPM1P06748 294 aaKnown RBP eCLIP18.96■□□□□ 0.63
VPS4A-204ENST00000566354 TCOF1Q13428 1488 aaKnown RBP18.96■□□□□ 0.63
VPS4A-204ENST00000566354 SETD5Q9C0A6 1442 aa18.95■□□□□ 0.62
VPS4A-204ENST00000566354 CFDP1Q9UEE9 299 aaPredicted RBP18.95■□□□□ 0.62
VPS4A-204ENST00000566354 MAPKBP1O60336 1514 aa18.95■□□□□ 0.62
VPS4A-204ENST00000566354 WDR7Q9Y4E6 1490 aa18.95■□□□□ 0.62
VPS4A-204ENST00000566354 ASXL2Q76L83 1435 aa18.94■□□□□ 0.62
VPS4A-204ENST00000566354 BCL11AQ9H165 835 aa18.92■□□□□ 0.62
VPS4A-204ENST00000566354 ZNF777Q9ULD5 760 aaPredicted RBP18.92■□□□□ 0.62
VPS4A-204ENST00000566354 PTPRKQ15262 1439 aa18.91■□□□□ 0.62
VPS4A-204ENST00000566354 CDC42BPBQ9Y5S2 1711 aa18.9■□□□□ 0.62
VPS4A-204ENST00000566354 SUPT16HQ9Y5B9 1047 aaKnown RBP18.9■□□□□ 0.62
VPS4A-204ENST00000566354 CAMSAP2Q08AD1 1489 aa18.89■□□□□ 0.61
VPS4A-204ENST00000566354 PREX2Q70Z35 1606 aa18.89■□□□□ 0.61
VPS4A-204ENST00000566354 MYO5CQ9NQX4 1742 aa18.87■□□□□ 0.61
VPS4A-204ENST00000566354 TIMELESSQ9UNS1 1208 aa18.85■□□□□ 0.61
VPS4A-204ENST00000566354 ARHGAP5Q13017 1502 aa18.84■□□□□ 0.61
VPS4A-204ENST00000566354 CHIC2Q9UKJ5 165 aa18.83■□□□□ 0.61
VPS4A-204ENST00000566354 PLCH2O75038 1416 aa18.82■□□□□ 0.6
VPS4A-204ENST00000566354 DNMT1P26358 1616 aaKnown RBP18.82■□□□□ 0.6
VPS4A-204ENST00000566354 SAMD9LQ8IVG5 1584 aa18.82■□□□□ 0.6
VPS4A-204ENST00000566354 ABCC5O15440 1437 aa18.82■□□□□ 0.6
VPS4A-204ENST00000566354 DAPK1P53355 1430 aa18.82■□□□□ 0.6
VPS4A-204ENST00000566354 ABCA9Q8IUA7 1624 aa18.82■□□□□ 0.6
VPS4A-204ENST00000566354 HNRNPMP52272 730 aaKnown RBP eCLIP18.78■□□□□ 0.6
VPS4A-204ENST00000566354 SIN3AQ96ST3 1273 aa18.77■□□□□ 0.59
VPS4A-204ENST00000566354 RRP7BPQ9NSQ0 103 aa18.76■□□□□ 0.59
VPS4A-204ENST00000566354 EFCAB2Q5VUJ9 269 aa18.75■□□□□ 0.59
VPS4A-204ENST00000566354 MBD5Q9P267 1494 aa18.75■□□□□ 0.59
VPS4A-204ENST00000566354 HFM1A2PYH4 1435 aa18.75■□□□□ 0.59
VPS4A-204ENST00000566354 SYCP2Q9BX26 1530 aa18.75■□□□□ 0.59
VPS4A-204ENST00000566354 CROCC2H7BZ55 1655 aa18.74■□□□□ 0.59
VPS4A-204ENST00000566354 NAIPQ13075 1403 aa18.74■□□□□ 0.59
VPS4A-204ENST00000566354 ARAP3Q8WWN8 1544 aa18.73■□□□□ 0.59
VPS4A-204ENST00000566354 AKNAQ7Z591 1439 aa18.72■□□□□ 0.59
VPS4A-204ENST00000566354 DDX10Q13206 875 aaKnown RBP18.72■□□□□ 0.59
VPS4A-204ENST00000566354 ARHGEF12Q9NZN5 1544 aa18.72■□□□□ 0.59
VPS4A-204ENST00000566354 ARHGEF5Q12774 1597 aa18.71■□□□□ 0.59
VPS4A-204ENST00000566354 FANCAO15360 1455 aa18.71■□□□□ 0.59
VPS4A-204ENST00000566354 CD109Q6YHK3 1445 aa18.71■□□□□ 0.59
VPS4A-204ENST00000566354 PPP1R15AO75807 674 aaPredicted RBP18.7■□□□□ 0.58
VPS4A-204ENST00000566354 KIAA1107Q9UPP5 1409 aa18.69■□□□□ 0.58
VPS4A-204ENST00000566354 ABCC1P33527 1531 aa18.69■□□□□ 0.58
VPS4A-204ENST00000566354 CCDC141Q6ZP82 1450 aa18.69■□□□□ 0.58
VPS4A-204ENST00000566354 PLEKHH2Q8IVE3 1493 aa18.69■□□□□ 0.58
VPS4A-204ENST00000566354 ROCK1Q13464 1354 aa18.69■□□□□ 0.58
VPS4A-204ENST00000566354 GCC2Q8IWJ2 1684 aa18.68■□□□□ 0.58
VPS4A-204ENST00000566354 C9orf84Q5VXU9 1444 aa18.68■□□□□ 0.58
VPS4A-204ENST00000566354 ADGBQ8N7X0 1667 aa18.67■□□□□ 0.58
VPS4A-204ENST00000566354 TSPY4P0CV99 314 aa18.67■□□□□ 0.58
VPS4A-204ENST00000566354 TSPY10P0CW01 314 aa18.67■□□□□ 0.58
VPS4A-204ENST00000566354 NCOA1Q15788 1441 aa18.66■□□□□ 0.58
VPS4A-204ENST00000566354 SHANK2Q9UPX8 1470 aa18.66■□□□□ 0.58
VPS4A-204ENST00000566354 KDM6BO15054 1643 aa18.66■□□□□ 0.58
VPS4A-204ENST00000566354 DIP2BQ9P265 1576 aa18.66■□□□□ 0.58
VPS4A-204ENST00000566354 ADGRL2O95490 1459 aa18.65■□□□□ 0.58
VPS4A-204ENST00000566354 FAM69CQ0P6D2 419 aa18.65■□□□□ 0.58
VPS4A-204ENST00000566354 RSPH4AQ5TD94 716 aa18.65■□□□□ 0.58
VPS4A-204ENST00000566354 TRAPPC8Q9Y2L5 1435 aa18.65■□□□□ 0.58
VPS4A-204ENST00000566354 MAP3K4Q9Y6R4 1608 aa18.64■□□□□ 0.57
VPS4A-204ENST00000566354 GLI2P10070 1586 aa18.64■□□□□ 0.57
VPS4A-204ENST00000566354 ADGRL1O94910 1474 aa18.63■□□□□ 0.57
VPS4A-204ENST00000566354 CCER2I3L3R5 266 aa18.63■□□□□ 0.57
VPS4A-204ENST00000566354 ANKRD30AQ9BXX3 1397 aa18.63■□□□□ 0.57
VPS4A-204ENST00000566354 DNAJC5Q9H3Z4 198 aa18.62■□□□□ 0.57
VPS4A-204ENST00000566354 TSHZ2Q9NRE2 1034 aa18.62■□□□□ 0.57
VPS4A-204ENST00000566354 AFAP1Q8N556 730 aa18.61■□□□□ 0.57
VPS4A-204ENST00000566354 SCAPERQ9BY12 1400 aa18.61■□□□□ 0.57
VPS4A-204ENST00000566354 ANP32CO43423 234 aa18.58■□□□□ 0.57
VPS4A-204ENST00000566354 MAST1Q9Y2H9 1570 aa18.58■□□□□ 0.57
VPS4A-204ENST00000566354 TONSLQ96HA7 1378 aa18.58■□□□□ 0.57
VPS4A-204ENST00000566354 CFAP74Q9C0B2 1584 aa18.58■□□□□ 0.56
VPS4A-204ENST00000566354 KIF15Q9NS87 1388 aa18.58■□□□□ 0.56
VPS4A-204ENST00000566354 TSPOAP1O95153 1857 aa18.57■□□□□ 0.56
VPS4A-204ENST00000566354 KIF13AQ9H1H9 1805 aa18.57■□□□□ 0.56
VPS4A-204ENST00000566354 ANKRD50Q9ULJ7 1429 aa18.55■□□□□ 0.56
VPS4A-204ENST00000566354 NEO1Q92859 1461 aa18.54■□□□□ 0.56
VPS4A-204ENST00000566354 SPAG9O60271 1321 aaKnown RBP18.54■□□□□ 0.56
VPS4A-204ENST00000566354 HIRIP3Q9BW71 556 aaPredicted RBP18.54■□□□□ 0.56
VPS4A-204ENST00000566354 TRIM52Q96A61 297 aa18.54■□□□□ 0.56
VPS4A-204ENST00000566354 PPRC1Q5VV67 1664 aaKnown RBP18.53■□□□□ 0.56
VPS4A-204ENST00000566354 FKBP8Q14318 412 aa18.52■□□□□ 0.56
VPS4A-204ENST00000566354 PLXNC1O60486 1568 aa18.52■□□□□ 0.56
VPS4A-204ENST00000566354 ZFYVE16Q7Z3T8 1539 aa18.52■□□□□ 0.56
VPS4A-204ENST00000566354 POGZQ7Z3K3 1410 aa18.5■□□□□ 0.55
VPS4A-204ENST00000566354 ZNF518AQ6AHZ1 1483 aa18.5■□□□□ 0.55
VPS4A-204ENST00000566354 INO80Q9ULG1 1556 aaPredicted RBP18.49■□□□□ 0.55
VPS4A-204ENST00000566354 RTEL1-TNFRSF6BF6WH68 1400 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms