RNA–Protein interactions for RNA: ENST00000566082.1

USB1-212, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 3,888 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-212ENST00000566082 PLIN1O60240 522 aa13.74□□□□□ -0.21
USB1-212ENST00000566082 CHGAP10645 457 aaKnown RBP13.74□□□□□ -0.21
USB1-212ENST00000566082 BECN1Q14457 450 aa13.74□□□□□ -0.21
USB1-212ENST00000566082 SLC4A3P48751 1232 aa13.74□□□□□ -0.21
USB1-212ENST00000566082 CHMP7Q8WUX9 453 aaPredicted RBP13.74□□□□□ -0.21
USB1-212ENST00000566082 CADPSQ9ULU8 1353 aa13.74□□□□□ -0.21
USB1-212ENST00000566082 NEUROD2Q15784 382 aa13.73□□□□□ -0.21
USB1-212ENST00000566082 TOP2BQ02880 1626 aa13.72□□□□□ -0.21
USB1-212ENST00000566082 RRP1P56182 461 aaKnown RBP13.71□□□□□ -0.21
USB1-212ENST00000566082 ST20-MTHFSA0A0A6YYL1 179 aa13.71□□□□□ -0.21
USB1-212ENST00000566082 RALBP1Q15311 655 aa13.71□□□□□ -0.21
USB1-212ENST00000566082 AKNAQ7Z591 1439 aa13.71□□□□□ -0.22
USB1-212ENST00000566082 KTN1Q86UP2 1357 aaKnown RBP13.71□□□□□ -0.22
USB1-212ENST00000566082 FRAT1Q92837 279 aaPredicted RBP13.7□□□□□ -0.22
USB1-212ENST00000566082 TIAM1Q13009 1591 aa13.7□□□□□ -0.22
USB1-212ENST00000566082 FGD5Q6ZNL6 1462 aa13.69□□□□□ -0.22
USB1-212ENST00000566082 NLRP13Q86W25 1043 aa13.69□□□□□ -0.22
USB1-212ENST00000566082 USP47Q96K76 1375 aa13.68□□□□□ -0.22
USB1-212ENST00000566082 NUP155O75694 1391 aa13.68□□□□□ -0.22
USB1-212ENST00000566082 GLIPR1L2Q4G1C9 344 aa13.67□□□□□ -0.22
USB1-212ENST00000566082 MYOM3Q5VTT5 1437 aa13.67□□□□□ -0.22
USB1-212ENST00000566082 NBPF8Q3BBV2 869 aa13.67□□□□□ -0.22
USB1-212ENST00000566082 MAPKBP1O60336 1514 aa13.66□□□□□ -0.22
USB1-212ENST00000566082 CUX1P39880 1505 aa13.66□□□□□ -0.22
USB1-212ENST00000566082 ROCK2O75116 1388 aaKnown RBP13.66□□□□□ -0.22
USB1-212ENST00000566082 C11orf95C9JLR9 678 aaPredicted RBP13.66□□□□□ -0.22
USB1-212ENST00000566082 TMF1P82094 1093 aa13.66□□□□□ -0.22
USB1-212ENST00000566082 ANP32BQ92688 251 aaKnown RBP13.65□□□□□ -0.22
USB1-212ENST00000566082 SLKQ9H2G2 1235 aaPredicted RBP13.65□□□□□ -0.22
USB1-212ENST00000566082 MYBBP1AQ9BQG0 1328 aaKnown RBP13.65□□□□□ -0.22
USB1-212ENST00000566082 IL27Q8NEV9 243 aa13.65□□□□□ -0.22
USB1-212ENST00000566082 USP35Q9P2H5 1018 aa13.65□□□□□ -0.22
USB1-212ENST00000566082 SPRYD3Q8NCJ5 442 aa13.65□□□□□ -0.23
USB1-212ENST00000566082 TNNT2P45379 298 aaPredicted RBP13.64□□□□□ -0.23
USB1-212ENST00000566082 CRBNQ96SW2 442 aa13.64□□□□□ -0.23
USB1-212ENST00000566082 RAD54L2Q9Y4B4 1467 aa13.64□□□□□ -0.23
USB1-212ENST00000566082 ZNF644Q9H582 1327 aaPredicted RBP13.64□□□□□ -0.23
USB1-212ENST00000566082 PDE3BQ13370 1112 aa13.64□□□□□ -0.23
USB1-212ENST00000566082 KIF15Q9NS87 1388 aa13.64□□□□□ -0.23
USB1-212ENST00000566082 CASKIN1Q8WXD9 1431 aa13.64□□□□□ -0.23
USB1-212ENST00000566082 ANO8Q9HCE9 1232 aaPredicted RBP13.63□□□□□ -0.23
USB1-212ENST00000566082 NCOA2Q15596 1464 aa13.63□□□□□ -0.23
USB1-212ENST00000566082 NAP1L5Q96NT1 182 aaPredicted RBP13.62□□□□□ -0.23
USB1-212ENST00000566082 HFM1A2PYH4 1435 aa13.62□□□□□ -0.23
USB1-212ENST00000566082 SENP3Q9H4L4 574 aaPredicted RBP13.62□□□□□ -0.23
USB1-212ENST00000566082 GSE1Q14687 1217 aa13.62□□□□□ -0.23
USB1-212ENST00000566082 CFTRP13569 1480 aa13.61□□□□□ -0.23
USB1-212ENST00000566082 CDCA8Q53HL2 280 aa13.61□□□□□ -0.23
USB1-212ENST00000566082 TRIM44Q96DX7 344 aaPredicted RBP13.59□□□□□ -0.23
USB1-212ENST00000566082 CDCA7LQ96GN5 454 aa13.59□□□□□ -0.23
USB1-212ENST00000566082 FYCO1Q9BQS8 1478 aa13.58□□□□□ -0.23
USB1-212ENST00000566082 NAIPQ13075 1403 aa13.58□□□□□ -0.23
USB1-212ENST00000566082 ANKRD30AQ9BXX3 1397 aa13.58□□□□□ -0.23
USB1-212ENST00000566082 FANCD2Q9BXW9 1451 aa13.58□□□□□ -0.24
USB1-212ENST00000566082 MS4A1P11836 297 aa13.58□□□□□ -0.24
USB1-212ENST00000566082 CCDC146Q8IYE0 955 aa13.58□□□□□ -0.24
USB1-212ENST00000566082 GZF1Q9H116 711 aaPredicted RBP13.58□□□□□ -0.24
USB1-212ENST00000566082 FTSJ3Q8IY81 847 aaKnown RBP13.57□□□□□ -0.24
USB1-212ENST00000566082 GOLGA2Q08379 1002 aa13.57□□□□□ -0.24
USB1-212ENST00000566082 PNISRQ8TF01 805 aaKnown RBP13.56□□□□□ -0.24
USB1-212ENST00000566082 PANK3Q9H999 370 aa13.56□□□□□ -0.24
USB1-212ENST00000566082 FAM161AQ3B820 660 aa13.55□□□□□ -0.24
USB1-212ENST00000566082 HNRNPMP52272 730 aaKnown RBP eCLIP13.54□□□□□ -0.24
USB1-212ENST00000566082 NFKBIBQ15653 356 aa13.54□□□□□ -0.24
USB1-212ENST00000566082 BRPF3Q9ULD4 1205 aa13.54□□□□□ -0.24
USB1-212ENST00000566082 SMG6Q86US8 1419 aaKnown RBP13.54□□□□□ -0.24
USB1-212ENST00000566082 CENPQQ7L2Z9 268 aaPredicted RBP13.53□□□□□ -0.24
USB1-212ENST00000566082 PCF11O94913 1555 aaKnown RBP13.52□□□□□ -0.25
USB1-212ENST00000566082 SKAP1Q86WV1 359 aa13.52□□□□□ -0.25
USB1-212ENST00000566082 BACH2Q9BYV9 841 aa13.52□□□□□ -0.25
USB1-212ENST00000566082 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.52□□□□□ -0.25
USB1-212ENST00000566082 PRDM2Q13029 1718 aa13.51□□□□□ -0.25
USB1-212ENST00000566082 L1TD1Q5T7N2 865 aaKnown RBP13.51□□□□□ -0.25
USB1-212ENST00000566082 SLC24A1O60721 1099 aa13.5□□□□□ -0.25
USB1-212ENST00000566082 CLUAP1Q96AJ1 413 aa13.5□□□□□ -0.25
USB1-212ENST00000566082 CFAP53Q96M91 514 aa13.5□□□□□ -0.25
USB1-212ENST00000566082 NCLP19338 710 aaKnown RBP13.5□□□□□ -0.25
USB1-212ENST00000566082 ARID4BQ4LE39 1312 aaPredicted RBP13.49□□□□□ -0.25
USB1-212ENST00000566082 MAP3K1Q13233 1512 aa13.48□□□□□ -0.25
USB1-212ENST00000566082 LAMC3Q9Y6N6 1575 aa13.48□□□□□ -0.25
USB1-212ENST00000566082 BRD4O60885 1362 aaPredicted RBP13.47□□□□□ -0.25
USB1-212ENST00000566082 GOLGA6L22H0YM25 854 aa13.45□□□□□ -0.26
USB1-212ENST00000566082 U2SURPO15042 1029 aaKnown RBP13.45□□□□□ -0.26
USB1-212ENST00000566082 HSP90AB1P08238 724 aaKnown RBP13.45□□□□□ -0.26
USB1-212ENST00000566082 PNNQ9H307 717 aaKnown RBP13.45□□□□□ -0.26
USB1-212ENST00000566082 PTPRKQ15262 1439 aa13.45□□□□□ -0.26
USB1-212ENST00000566082 APAF1O14727 1248 aa13.45□□□□□ -0.26
USB1-212ENST00000566082 HSCBQ8IWL3 235 aa13.45□□□□□ -0.26
USB1-212ENST00000566082 GAPVD1Q14C86 1478 aa13.45□□□□□ -0.26
USB1-212ENST00000566082 FRAT2O75474 233 aaPredicted RBP13.45□□□□□ -0.26
USB1-212ENST00000566082 COG6Q9Y2V7 657 aa13.45□□□□□ -0.26
USB1-212ENST00000566082 NCOA1Q15788 1441 aa13.45□□□□□ -0.26
USB1-212ENST00000566082 MORC1Q86VD1 984 aa13.44□□□□□ -0.26
USB1-212ENST00000566082 BCL2L13Q9BXK5 485 aa13.44□□□□□ -0.26
USB1-212ENST00000566082 ADAMTS8Q9UP79 889 aa13.44□□□□□ -0.26
USB1-212ENST00000566082 EFCAB5A4FU69 1503 aa13.44□□□□□ -0.26
USB1-212ENST00000566082 MFAP1P55081 439 aaKnown RBP13.43□□□□□ -0.26
USB1-212ENST00000566082 MYH16Q9H6N6 1097 aa13.43□□□□□ -0.26
USB1-212ENST00000566082 RRP7AQ9Y3A4 280 aaKnown RBP13.43□□□□□ -0.26
USB1-212ENST00000566082 CENPJQ9HC77 1338 aaPredicted RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms