RNA–Protein interactions for RNA: ENST00000563343.5

HERPUD1-206, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 4

Gene HERPUD1, Length 567 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-206ENST00000563343 ARHGEF12Q9NZN5 1544 aa13.51□□□□□ -0.25
HERPUD1-206ENST00000563343 POGZQ7Z3K3 1410 aa13.51□□□□□ -0.25
HERPUD1-206ENST00000563343 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.5□□□□□ -0.25
HERPUD1-206ENST00000563343 MAGI2Q86UL8 1455 aa13.49□□□□□ -0.25
HERPUD1-206ENST00000563343 P3H3Q8IVL6 736 aa13.49□□□□□ -0.25
HERPUD1-206ENST00000563343 SETD1BQ9UPS6 1966 aaKnown RBP13.47□□□□□ -0.25
HERPUD1-206ENST00000563343 LTBP4Q8N2S1 1624 aa13.44□□□□□ -0.26
HERPUD1-206ENST00000563343 MLECQ14165 292 aa13.42□□□□□ -0.26
HERPUD1-206ENST00000563343 C3P01024 1663 aa13.42□□□□□ -0.26
HERPUD1-206ENST00000563343 PTPRTO14522 1441 aa13.4□□□□□ -0.26
HERPUD1-206ENST00000563343 FAM9AQ8IZU1 332 aaPredicted RBP13.4□□□□□ -0.26
HERPUD1-206ENST00000563343 ATP10AO60312 1499 aa13.4□□□□□ -0.26
HERPUD1-206ENST00000563343 IQSEC2Q5JU85 1478 aa13.4□□□□□ -0.26
HERPUD1-206ENST00000563343 C9orf84Q5VXU9 1444 aa13.39□□□□□ -0.27
HERPUD1-206ENST00000563343 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.39□□□□□ -0.27
HERPUD1-206ENST00000563343 HNRNPUL2Q1KMD3 747 aaKnown RBP13.39□□□□□ -0.27
HERPUD1-206ENST00000563343 MYO5CQ9NQX4 1742 aa13.39□□□□□ -0.27
HERPUD1-206ENST00000563343 CEBPAP49715 358 aaPredicted RBP13.38□□□□□ -0.27
HERPUD1-206ENST00000563343 PIAS4Q8N2W9 510 aaPredicted RBP13.38□□□□□ -0.27
HERPUD1-206ENST00000563343 DMRT2Q9Y5R5 561 aa13.38□□□□□ -0.27
HERPUD1-206ENST00000563343 UHRF1BP1Q6BDS2 1440 aa13.38□□□□□ -0.27
HERPUD1-206ENST00000563343 SCAPERQ9BY12 1400 aa13.38□□□□□ -0.27
HERPUD1-206ENST00000563343 PLEKHD1A6NEE1 506 aa13.36□□□□□ -0.27
HERPUD1-206ENST00000563343 PLCH2O75038 1416 aa13.36□□□□□ -0.27
HERPUD1-206ENST00000563343 KDM5CP41229 1560 aa13.36□□□□□ -0.27
HERPUD1-206ENST00000563343 REREQ9P2R6 1566 aa13.36□□□□□ -0.27
HERPUD1-206ENST00000563343 CDK13Q14004 1512 aaKnown RBP13.34□□□□□ -0.27
HERPUD1-206ENST00000563343 DIP2CQ9Y2E4 1556 aa13.34□□□□□ -0.27
HERPUD1-206ENST00000563343 ABCA6Q8N139 1617 aa13.32□□□□□ -0.28
HERPUD1-206ENST00000563343 NCOA1Q15788 1441 aa13.3□□□□□ -0.28
HERPUD1-206ENST00000563343 KIF14Q15058 1648 aa13.3□□□□□ -0.28
HERPUD1-206ENST00000563343 ZNF518AQ6AHZ1 1483 aa13.29□□□□□ -0.28
HERPUD1-206ENST00000563343 AGLP35573 1532 aa13.29□□□□□ -0.28
HERPUD1-206ENST00000563343 CDC42BPBQ9Y5S2 1711 aa13.28□□□□□ -0.28
HERPUD1-206ENST00000563343 MROH2AA6NES4 1674 aa13.28□□□□□ -0.28
HERPUD1-206ENST00000563343 LRRIQ1Q96JM4 1722 aa13.27□□□□□ -0.29
HERPUD1-206ENST00000563343 CAMSAP1Q5T5Y3 1602 aa13.26□□□□□ -0.29
HERPUD1-206ENST00000563343 TRAPPC8Q9Y2L5 1435 aa13.26□□□□□ -0.29
HERPUD1-206ENST00000563343 KIDINS220Q9ULH0 1771 aa13.25□□□□□ -0.29
HERPUD1-206ENST00000563343 ZNF142P52746 1687 aaPredicted RBP13.25□□□□□ -0.29
HERPUD1-206ENST00000563343 MLH3Q9UHC1 1453 aa13.24□□□□□ -0.29
HERPUD1-206ENST00000563343 CSRNP3Q8WYN3 585 aa13.24□□□□□ -0.29
HERPUD1-206ENST00000563343 SUPT6HQ7KZ85 1726 aaKnown RBP13.24□□□□□ -0.29
HERPUD1-206ENST00000563343 ITSN2Q9NZM3 1697 aa13.24□□□□□ -0.29
HERPUD1-206ENST00000563343 MED1Q15648 1581 aaPredicted RBP13.24□□□□□ -0.29
HERPUD1-206ENST00000563343 EFCAB2Q5VUJ9 269 aa13.23□□□□□ -0.29
HERPUD1-206ENST00000563343 AFAP1Q8N556 730 aa13.22□□□□□ -0.29
HERPUD1-206ENST00000563343 ARHGAP5Q13017 1502 aa13.22□□□□□ -0.29
HERPUD1-206ENST00000563343 RANGAP1P46060 587 aaPredicted RBP13.21□□□□□ -0.29
HERPUD1-206ENST00000563343 PREX2Q70Z35 1606 aa13.21□□□□□ -0.3
HERPUD1-206ENST00000563343 MYO3AQ8NEV4 1616 aa13.21□□□□□ -0.3
HERPUD1-206ENST00000563343 ABCC1P33527 1531 aa13.2□□□□□ -0.3
HERPUD1-206ENST00000563343 ZNF335Q9H4Z2 1342 aaPredicted RBP13.19□□□□□ -0.3
HERPUD1-206ENST00000563343 MSH5O43196 834 aa13.19□□□□□ -0.3
HERPUD1-206ENST00000563343 NPATQ14207 1427 aa13.19□□□□□ -0.3
HERPUD1-206ENST00000563343 CNTLNQ9NXG0 1405 aa13.19□□□□□ -0.3
HERPUD1-206ENST00000563343 PLA2R1Q13018 1463 aa13.17□□□□□ -0.3
HERPUD1-206ENST00000563343 TCOF1Q13428 1488 aaKnown RBP13.17□□□□□ -0.3
HERPUD1-206ENST00000563343 TROQ12816 1431 aaPredicted RBP13.17□□□□□ -0.3
HERPUD1-206ENST00000563343 UBAP1LF5GYI3 381 aa13.17□□□□□ -0.3
HERPUD1-206ENST00000563343 CLTCQ00610 1675 aaKnown RBP13.17□□□□□ -0.3
HERPUD1-206ENST00000563343 CDC42BPAQ5VT25 1732 aa13.16□□□□□ -0.3
HERPUD1-206ENST00000563343 CEP170BQ9Y4F5 1589 aaPredicted RBP13.15□□□□□ -0.3
HERPUD1-206ENST00000563343 NCKAP5LQ9HCH0 1330 aa13.14□□□□□ -0.31
HERPUD1-206ENST00000563343 EEA1Q15075 1411 aa13.13□□□□□ -0.31
HERPUD1-206ENST00000563343 POLR1AO95602 1720 aaPredicted RBP13.13□□□□□ -0.31
HERPUD1-206ENST00000563343 SAMD9LQ8IVG5 1584 aa13.12□□□□□ -0.31
HERPUD1-206ENST00000563343 ZMYM3Q14202 1370 aa13.12□□□□□ -0.31
HERPUD1-206ENST00000563343 ALKQ9UM73 1620 aa13.12□□□□□ -0.31
HERPUD1-206ENST00000563343 PLXNC1O60486 1568 aa13.11□□□□□ -0.31
HERPUD1-206ENST00000563343 FMN1Q68DA7 1419 aa13.11□□□□□ -0.31
HERPUD1-206ENST00000563343 ARHGAP35Q9NRY4 1499 aa13.1□□□□□ -0.31
HERPUD1-206ENST00000563343 ESF1Q9H501 851 aaKnown RBP13.1□□□□□ -0.31
HERPUD1-206ENST00000563343 MYT1LQ9UL68 1186 aa13.1□□□□□ -0.31
HERPUD1-206ENST00000563343 CLIP1P30622 1438 aa13.09□□□□□ -0.31
HERPUD1-206ENST00000563343 HSPA1LP34931 641 aa13.09□□□□□ -0.31
HERPUD1-206ENST00000563343 PKD2Q13563 968 aa13.09□□□□□ -0.31
HERPUD1-206ENST00000563343 PTPRKQ15262 1439 aa13.09□□□□□ -0.31
HERPUD1-206ENST00000563343 NEURL4Q96JN8 1562 aa13.09□□□□□ -0.31
HERPUD1-206ENST00000563343 DNMT1P26358 1616 aaKnown RBP13.09□□□□□ -0.31
HERPUD1-206ENST00000563343 INO80Q9ULG1 1556 aaPredicted RBP13.07□□□□□ -0.32
HERPUD1-206ENST00000563343 CDK11AQ9UQ88 783 aaPredicted RBP13.07□□□□□ -0.32
HERPUD1-206ENST00000563343 CPS1P31327 1500 aa13.06□□□□□ -0.32
HERPUD1-206ENST00000563343 ATP7AQ04656 1500 aa13.04□□□□□ -0.32
HERPUD1-206ENST00000563343 SYCP2Q9BX26 1530 aa13.04□□□□□ -0.32
HERPUD1-206ENST00000563343 VWDEQ8N2E2 1590 aa13.04□□□□□ -0.32
HERPUD1-206ENST00000563343 STRCP1A6NGW2 1772 aa13.03□□□□□ -0.32
HERPUD1-206ENST00000563343 ATP1B4Q9UN42 357 aaPredicted RBP13.03□□□□□ -0.32
HERPUD1-206ENST00000563343 A2ML1A8K2U0 1454 aa13.03□□□□□ -0.32
HERPUD1-206ENST00000563343 SHANK2Q9UPX8 1470 aa13.03□□□□□ -0.32
HERPUD1-206ENST00000563343 ADGBQ8N7X0 1667 aa13.02□□□□□ -0.32
HERPUD1-206ENST00000563343 A2MP01023 1474 aa13□□□□□ -0.33
HERPUD1-206ENST00000563343 PIP4K2BP78356 416 aa13□□□□□ -0.33
HERPUD1-206ENST00000563343 TOM1O60784 492 aa12.99□□□□□ -0.33
HERPUD1-206ENST00000563343 CCDC18Q5T9S5 1454 aa12.98□□□□□ -0.33
HERPUD1-206ENST00000563343 SCAF1Q9H7N4 1312 aaKnown RBP12.98□□□□□ -0.33
HERPUD1-206ENST00000563343 DEPDC5O75140 1603 aa12.98□□□□□ -0.33
HERPUD1-206ENST00000563343 GPATCH8Q9UKJ3 1502 aaKnown RBP12.97□□□□□ -0.33
HERPUD1-206ENST00000563343 SPAG9O60271 1321 aaKnown RBP12.96□□□□□ -0.33
HERPUD1-206ENST00000563343 CASKIN1Q8WXD9 1431 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms