RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 DAPK1P53355 1430 aa26.79■■□□□ 1.88
COMMD4-208ENST00000563220 NAIPQ13075 1403 aa26.76■■□□□ 1.88
COMMD4-208ENST00000563220 TTC37Q6PGP7 1564 aa26.75■■□□□ 1.87
COMMD4-208ENST00000563220 RRP7BPQ9NSQ0 103 aa26.75■■□□□ 1.87
COMMD4-208ENST00000563220 DNMT1P26358 1616 aaKnown RBP26.74■■□□□ 1.87
COMMD4-208ENST00000563220 WDR7Q9Y4E6 1490 aa26.72■■□□□ 1.87
COMMD4-208ENST00000563220 NPM1P06748 294 aaKnown RBP eCLIP26.7■■□□□ 1.87
COMMD4-208ENST00000563220 PREX2Q70Z35 1606 aa26.69■■□□□ 1.86
COMMD4-208ENST00000563220 ASXL2Q76L83 1435 aa26.69■■□□□ 1.86
COMMD4-208ENST00000563220 AKNAQ7Z591 1439 aa26.69■■□□□ 1.86
COMMD4-208ENST00000563220 CDC42BPBQ9Y5S2 1711 aa26.69■■□□□ 1.86
COMMD4-208ENST00000563220 ROCK1Q13464 1354 aa26.67■■□□□ 1.86
COMMD4-208ENST00000563220 CLSPNQ9HAW4 1339 aa26.66■■□□□ 1.86
COMMD4-208ENST00000563220 CYB5RLQ6IPT4 315 aa26.66■■□□□ 1.86
COMMD4-208ENST00000563220 HNRNPMP52272 730 aaKnown RBP eCLIP26.66■■□□□ 1.86
COMMD4-208ENST00000563220 PLCH2O75038 1416 aa26.65■■□□□ 1.86
COMMD4-208ENST00000563220 ARHGAP5Q13017 1502 aa26.64■■□□□ 1.85
COMMD4-208ENST00000563220 RIMBP3CA6NJZ7 1639 aa26.63■■□□□ 1.85
COMMD4-208ENST00000563220 RIMBP3BA6NNM3 1639 aa26.63■■□□□ 1.85
COMMD4-208ENST00000563220 RIMBP3Q9UFD9 1639 aa26.63■■□□□ 1.85
COMMD4-208ENST00000563220 SAMD9LQ8IVG5 1584 aa26.63■■□□□ 1.85
COMMD4-208ENST00000563220 MBD5Q9P267 1494 aa26.63■■□□□ 1.85
COMMD4-208ENST00000563220 MYO5CQ9NQX4 1742 aa26.6■■□□□ 1.85
COMMD4-208ENST00000563220 NCOA1Q15788 1441 aa26.58■■□□□ 1.84
COMMD4-208ENST00000563220 EFCAB2Q5VUJ9 269 aa26.57■■□□□ 1.84
COMMD4-208ENST00000563220 GCC2Q8IWJ2 1684 aa26.57■■□□□ 1.84
COMMD4-208ENST00000563220 ADGRL2O95490 1459 aa26.56■■□□□ 1.84
COMMD4-208ENST00000563220 ARHGEF5Q12774 1597 aa26.56■■□□□ 1.84
COMMD4-208ENST00000563220 KDM6BO15054 1643 aa26.55■■□□□ 1.84
COMMD4-208ENST00000563220 TSPY4P0CV99 314 aa26.55■■□□□ 1.84
COMMD4-208ENST00000563220 TSPY10P0CW01 314 aa26.55■■□□□ 1.84
COMMD4-208ENST00000563220 RSPH4AQ5TD94 716 aa26.55■■□□□ 1.84
COMMD4-208ENST00000563220 MAPKBP1O60336 1514 aa26.55■■□□□ 1.84
COMMD4-208ENST00000563220 CROCC2H7BZ55 1655 aa26.54■■□□□ 1.84
COMMD4-208ENST00000563220 C9orf84Q5VXU9 1444 aa26.53■■□□□ 1.84
COMMD4-208ENST00000563220 KIAA1107Q9UPP5 1409 aa26.53■■□□□ 1.84
COMMD4-208ENST00000563220 SHANK2Q9UPX8 1470 aa26.53■■□□□ 1.84
COMMD4-208ENST00000563220 SYCP2Q9BX26 1530 aa26.52■■□□□ 1.84
COMMD4-208ENST00000563220 ANKRD30AQ9BXX3 1397 aa26.52■■□□□ 1.84
COMMD4-208ENST00000563220 ABCA9Q8IUA7 1624 aa26.52■■□□□ 1.84
COMMD4-208ENST00000563220 CCDC141Q6ZP82 1450 aa26.52■■□□□ 1.84
COMMD4-208ENST00000563220 PLEKHH2Q8IVE3 1493 aa26.51■■□□□ 1.83
COMMD4-208ENST00000563220 ARAP3Q8WWN8 1544 aa26.5■■□□□ 1.83
COMMD4-208ENST00000563220 ARHGEF12Q9NZN5 1544 aa26.5■■□□□ 1.83
COMMD4-208ENST00000563220 ADGBQ8N7X0 1667 aa26.47■■□□□ 1.83
COMMD4-208ENST00000563220 TRIM52Q96A61 297 aa26.47■■□□□ 1.83
COMMD4-208ENST00000563220 ABCC1P33527 1531 aa26.43■■□□□ 1.82
COMMD4-208ENST00000563220 FANCAO15360 1455 aa26.42■■□□□ 1.82
COMMD4-208ENST00000563220 TRAPPC8Q9Y2L5 1435 aa26.4■■□□□ 1.82
COMMD4-208ENST00000563220 SIN3AQ96ST3 1273 aa26.4■■□□□ 1.82
COMMD4-208ENST00000563220 ANKRD50Q9ULJ7 1429 aa26.39■■□□□ 1.82
COMMD4-208ENST00000563220 ACIN1Q9UKV3 1341 aaKnown RBP26.39■■□□□ 1.82
COMMD4-208ENST00000563220 KIF15Q9NS87 1388 aa26.39■■□□□ 1.81
COMMD4-208ENST00000563220 CD109Q6YHK3 1445 aa26.38■■□□□ 1.81
COMMD4-208ENST00000563220 MPHOSPH9Q99550 1183 aa26.37■■□□□ 1.81
COMMD4-208ENST00000563220 DENND4BO75064 1496 aaPredicted RBP26.36■■□□□ 1.81
COMMD4-208ENST00000563220 MAST1Q9Y2H9 1570 aa26.36■■□□□ 1.81
COMMD4-208ENST00000563220 AFAP1Q8N556 730 aa26.35■■□□□ 1.81
COMMD4-208ENST00000563220 NEUROD1Q13562 356 aa26.33■■□□□ 1.81
COMMD4-208ENST00000563220 SCAPERQ9BY12 1400 aa26.31■■□□□ 1.8
COMMD4-208ENST00000563220 ADGRL1O94910 1474 aa26.3■■□□□ 1.8
COMMD4-208ENST00000563220 SPAG9O60271 1321 aaKnown RBP26.28■■□□□ 1.8
COMMD4-208ENST00000563220 SLC4A1APQ9BWU0 796 aaKnown RBP26.27■■□□□ 1.8
COMMD4-208ENST00000563220 PZPP20742 1482 aa26.26■■□□□ 1.79
COMMD4-208ENST00000563220 FOXD1Q16676 465 aa26.25■■□□□ 1.79
COMMD4-208ENST00000563220 PLXNC1O60486 1568 aa26.25■■□□□ 1.79
COMMD4-208ENST00000563220 RTEL1-TNFRSF6BF6WH68 1400 aa26.24■■□□□ 1.79
COMMD4-208ENST00000563220 FAM69CQ0P6D2 419 aa26.21■■□□□ 1.79
COMMD4-208ENST00000563220 GLI2P10070 1586 aa26.21■■□□□ 1.79
COMMD4-208ENST00000563220 NUP155O75694 1391 aa26.21■■□□□ 1.79
COMMD4-208ENST00000563220 TIMELESSQ9UNS1 1208 aa26.19■■□□□ 1.78
COMMD4-208ENST00000563220 DUOX2Q9NRD8 1548 aa26.19■■□□□ 1.78
COMMD4-208ENST00000563220 ZFYVE16Q7Z3T8 1539 aa26.18■■□□□ 1.78
COMMD4-208ENST00000563220 MAP3K4Q9Y6R4 1608 aa26.17■■□□□ 1.78
COMMD4-208ENST00000563220 CFAP74Q9C0B2 1584 aa26.16■■□□□ 1.78
COMMD4-208ENST00000563220 NEO1Q92859 1461 aa26.16■■□□□ 1.78
COMMD4-208ENST00000563220 ANKRD30BQ9BXX2 1392 aa26.16■■□□□ 1.78
COMMD4-208ENST00000563220 DIP2BQ9P265 1576 aa26.15■■□□□ 1.78
COMMD4-208ENST00000563220 PKD2Q13563 968 aa26.14■■□□□ 1.78
COMMD4-208ENST00000563220 ERBINQ96RT1 1412 aa26.14■■□□□ 1.77
COMMD4-208ENST00000563220 KDM5DQ9BY66 1539 aa26.14■■□□□ 1.77
COMMD4-208ENST00000563220 ATP7AQ04656 1500 aa26.13■■□□□ 1.77
COMMD4-208ENST00000563220 ZNF518AQ6AHZ1 1483 aa26.13■■□□□ 1.77
COMMD4-208ENST00000563220 INO80Q9ULG1 1556 aaPredicted RBP26.12■■□□□ 1.77
COMMD4-208ENST00000563220 MYT1LQ9UL68 1186 aa26.12■■□□□ 1.77
COMMD4-208ENST00000563220 POGZQ7Z3K3 1410 aa26.11■■□□□ 1.77
COMMD4-208ENST00000563220 TONSLQ96HA7 1378 aa26.09■■□□□ 1.77
COMMD4-208ENST00000563220 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.08■■□□□ 1.77
COMMD4-208ENST00000563220 PPP1R15AO75807 674 aaPredicted RBP26.08■■□□□ 1.77
COMMD4-208ENST00000563220 RAPGEF3O95398 923 aa26.07■■□□□ 1.76
COMMD4-208ENST00000563220 UNC13BO14795 1591 aa26.05■■□□□ 1.76
COMMD4-208ENST00000563220 ZNF316A6NFI3 1004 aaPredicted RBP26.05■■□□□ 1.76
COMMD4-208ENST00000563220 KDM5CP41229 1560 aa26.05■■□□□ 1.76
COMMD4-208ENST00000563220 FAM135AQ9P2D6 1515 aa26.04■■□□□ 1.76
COMMD4-208ENST00000563220 DHX29Q7Z478 1369 aaKnown RBP26.04■■□□□ 1.76
COMMD4-208ENST00000563220 KIDINS220Q9ULH0 1771 aa26.03■■□□□ 1.76
COMMD4-208ENST00000563220 MLH3Q9UHC1 1453 aa26.03■■□□□ 1.76
COMMD4-208ENST00000563220 MAGI2Q86UL8 1455 aa26.01■■□□□ 1.75
COMMD4-208ENST00000563220 RPRD2Q5VT52 1461 aaKnown RBP25.99■■□□□ 1.75
COMMD4-208ENST00000563220 KIF3BO15066 747 aa25.96■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms