RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 MAPKBP1O60336 1514 aa19.02■□□□□ 0.64
SNX1-211ENST00000560829 CDC42BPAQ5VT25 1732 aa19.01■□□□□ 0.63
SNX1-211ENST00000560829 ZCCHC11Q5TAX3 1644 aaKnown RBP19.01■□□□□ 0.63
SNX1-211ENST00000560829 GCC2Q8IWJ2 1684 aa19■□□□□ 0.63
SNX1-211ENST00000560829 CHIC2Q9UKJ5 165 aa18.98■□□□□ 0.63
SNX1-211ENST00000560829 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.97■□□□□ 0.63
SNX1-211ENST00000560829 PREX2Q70Z35 1606 aa18.96■□□□□ 0.63
SNX1-211ENST00000560829 RRP7BPQ9NSQ0 103 aa18.96■□□□□ 0.63
SNX1-211ENST00000560829 ACIN1Q9UKV3 1341 aaKnown RBP18.96■□□□□ 0.63
SNX1-211ENST00000560829 ADGRL2O95490 1459 aa18.95■□□□□ 0.62
SNX1-211ENST00000560829 ZNF777Q9ULD5 760 aaPredicted RBP18.94■□□□□ 0.62
SNX1-211ENST00000560829 TTC37Q6PGP7 1564 aa18.94■□□□□ 0.62
SNX1-211ENST00000560829 SHANK2Q9UPX8 1470 aa18.94■□□□□ 0.62
SNX1-211ENST00000560829 NCOA1Q15788 1441 aa18.92■□□□□ 0.62
SNX1-211ENST00000560829 ARHGEF5Q12774 1597 aa18.91■□□□□ 0.62
SNX1-211ENST00000560829 CROCC2H7BZ55 1655 aa18.91■□□□□ 0.62
SNX1-211ENST00000560829 MBD5Q9P267 1494 aa18.91■□□□□ 0.62
SNX1-211ENST00000560829 CDC42BPBQ9Y5S2 1711 aa18.9■□□□□ 0.62
SNX1-211ENST00000560829 SAMD9LQ8IVG5 1584 aa18.89■□□□□ 0.61
SNX1-211ENST00000560829 WDR7Q9Y4E6 1490 aa18.89■□□□□ 0.61
SNX1-211ENST00000560829 PLCH2O75038 1416 aa18.89■□□□□ 0.61
SNX1-211ENST00000560829 RSPH4AQ5TD94 716 aa18.88■□□□□ 0.61
SNX1-211ENST00000560829 KDM6BO15054 1643 aa18.88■□□□□ 0.61
SNX1-211ENST00000560829 ADGBQ8N7X0 1667 aa18.87■□□□□ 0.61
SNX1-211ENST00000560829 ANKRD30AQ9BXX3 1397 aa18.87■□□□□ 0.61
SNX1-211ENST00000560829 ARHGAP5Q13017 1502 aa18.86■□□□□ 0.61
SNX1-211ENST00000560829 KCNH8Q96L42 1107 aa18.86■□□□□ 0.61
SNX1-211ENST00000560829 PLEKHH2Q8IVE3 1493 aa18.86■□□□□ 0.61
SNX1-211ENST00000560829 KIAA1107Q9UPP5 1409 aa18.86■□□□□ 0.61
SNX1-211ENST00000560829 C9orf84Q5VXU9 1444 aa18.86■□□□□ 0.61
SNX1-211ENST00000560829 ARAP3Q8WWN8 1544 aa18.85■□□□□ 0.61
SNX1-211ENST00000560829 CCDC141Q6ZP82 1450 aa18.85■□□□□ 0.61
SNX1-211ENST00000560829 MYO5CQ9NQX4 1742 aa18.85■□□□□ 0.61
SNX1-211ENST00000560829 TIMELESSQ9UNS1 1208 aa18.84■□□□□ 0.61
SNX1-211ENST00000560829 TSPY4P0CV99 314 aa18.82■□□□□ 0.6
SNX1-211ENST00000560829 TSPY10P0CW01 314 aa18.82■□□□□ 0.6
SNX1-211ENST00000560829 HNRNPMP52272 730 aaKnown RBP eCLIP18.82■□□□□ 0.6
SNX1-211ENST00000560829 ASXL2Q76L83 1435 aa18.81■□□□□ 0.6
SNX1-211ENST00000560829 DENND4BO75064 1496 aaPredicted RBP18.81■□□□□ 0.6
SNX1-211ENST00000560829 EFCAB2Q5VUJ9 269 aa18.8■□□□□ 0.6
SNX1-211ENST00000560829 SYCP2Q9BX26 1530 aa18.8■□□□□ 0.6
SNX1-211ENST00000560829 MAST1Q9Y2H9 1570 aa18.79■□□□□ 0.6
SNX1-211ENST00000560829 TRIM52Q96A61 297 aa18.78■□□□□ 0.6
SNX1-211ENST00000560829 SIN3AQ96ST3 1273 aa18.78■□□□□ 0.6
SNX1-211ENST00000560829 ABCA9Q8IUA7 1624 aa18.78■□□□□ 0.6
SNX1-211ENST00000560829 ANKRD50Q9ULJ7 1429 aa18.78■□□□□ 0.6
SNX1-211ENST00000560829 NPM1P06748 294 aaKnown RBP eCLIP18.77■□□□□ 0.6
SNX1-211ENST00000560829 MPHOSPH9Q99550 1183 aa18.77■□□□□ 0.6
SNX1-211ENST00000560829 ZNF316A6NFI3 1004 aaPredicted RBP18.76■□□□□ 0.59
SNX1-211ENST00000560829 ABCC1P33527 1531 aa18.76■□□□□ 0.59
SNX1-211ENST00000560829 ARHGEF12Q9NZN5 1544 aa18.75■□□□□ 0.59
SNX1-211ENST00000560829 KIF15Q9NS87 1388 aa18.74■□□□□ 0.59
SNX1-211ENST00000560829 NEUROD1Q13562 356 aa18.72■□□□□ 0.59
SNX1-211ENST00000560829 PZPP20742 1482 aa18.71■□□□□ 0.59
SNX1-211ENST00000560829 PLXNC1O60486 1568 aa18.7■□□□□ 0.58
SNX1-211ENST00000560829 FANCAO15360 1455 aa18.69■□□□□ 0.58
SNX1-211ENST00000560829 KDM5DQ9BY66 1539 aa18.68■□□□□ 0.58
SNX1-211ENST00000560829 TRAPPC8Q9Y2L5 1435 aa18.67■□□□□ 0.58
SNX1-211ENST00000560829 SLC4A1APQ9BWU0 796 aaKnown RBP18.67■□□□□ 0.58
SNX1-211ENST00000560829 ANKRD30BQ9BXX2 1392 aa18.66■□□□□ 0.58
SNX1-211ENST00000560829 TONSLQ96HA7 1378 aa18.66■□□□□ 0.58
SNX1-211ENST00000560829 RTEL1-TNFRSF6BF6WH68 1400 aa18.65■□□□□ 0.58
SNX1-211ENST00000560829 RIMBP3CA6NJZ7 1639 aa18.65■□□□□ 0.58
SNX1-211ENST00000560829 RIMBP3BA6NNM3 1639 aa18.65■□□□□ 0.58
SNX1-211ENST00000560829 RIMBP3Q9UFD9 1639 aa18.65■□□□□ 0.58
SNX1-211ENST00000560829 PPP1R15AO75807 674 aaPredicted RBP18.65■□□□□ 0.58
SNX1-211ENST00000560829 DUOX2Q9NRD8 1548 aa18.62■□□□□ 0.57
SNX1-211ENST00000560829 NUP155O75694 1391 aa18.61■□□□□ 0.57
SNX1-211ENST00000560829 ERBINQ96RT1 1412 aa18.61■□□□□ 0.57
SNX1-211ENST00000560829 ADGRL1O94910 1474 aa18.6■□□□□ 0.57
SNX1-211ENST00000560829 CD109Q6YHK3 1445 aa18.6■□□□□ 0.57
SNX1-211ENST00000560829 CYB5RLQ6IPT4 315 aa18.6■□□□□ 0.57
SNX1-211ENST00000560829 RPRD2Q5VT52 1461 aaKnown RBP18.6■□□□□ 0.57
SNX1-211ENST00000560829 FOXD1Q16676 465 aa18.59■□□□□ 0.57
SNX1-211ENST00000560829 ZFYVE16Q7Z3T8 1539 aa18.59■□□□□ 0.57
SNX1-211ENST00000560829 SPAG9O60271 1321 aaKnown RBP18.59■□□□□ 0.57
SNX1-211ENST00000560829 DIEXFQ68CQ4 756 aaKnown RBP18.58■□□□□ 0.57
SNX1-211ENST00000560829 SCAPERQ9BY12 1400 aa18.58■□□□□ 0.57
SNX1-211ENST00000560829 UNC13BO14795 1591 aa18.57■□□□□ 0.56
SNX1-211ENST00000560829 AFAP1Q8N556 730 aa18.57■□□□□ 0.56
SNX1-211ENST00000560829 CFAP74Q9C0B2 1584 aa18.56■□□□□ 0.56
SNX1-211ENST00000560829 PKD2Q13563 968 aa18.56■□□□□ 0.56
SNX1-211ENST00000560829 INO80Q9ULG1 1556 aaPredicted RBP18.55■□□□□ 0.56
SNX1-211ENST00000560829 MAGI2Q86UL8 1455 aa18.55■□□□□ 0.56
SNX1-211ENST00000560829 FAM135AQ9P2D6 1515 aa18.53■□□□□ 0.56
SNX1-211ENST00000560829 ATP7AQ04656 1500 aa18.53■□□□□ 0.56
SNX1-211ENST00000560829 GLI2P10070 1586 aa18.52■□□□□ 0.56
SNX1-211ENST00000560829 ZNF518AQ6AHZ1 1483 aa18.52■□□□□ 0.56
SNX1-211ENST00000560829 NEO1Q92859 1461 aa18.52■□□□□ 0.56
SNX1-211ENST00000560829 TEX14Q8IWB6 1497 aa18.5■□□□□ 0.55
SNX1-211ENST00000560829 POGZQ7Z3K3 1410 aa18.49■□□□□ 0.55
SNX1-211ENST00000560829 IQGAP3Q86VI3 1631 aa18.49■□□□□ 0.55
SNX1-211ENST00000560829 L3MBTL2Q969R5 705 aa18.48■□□□□ 0.55
SNX1-211ENST00000560829 KDM5CP41229 1560 aa18.47■□□□□ 0.55
SNX1-211ENST00000560829 MAP3K4Q9Y6R4 1608 aa18.47■□□□□ 0.55
SNX1-211ENST00000560829 DHX29Q7Z478 1369 aaKnown RBP18.46■□□□□ 0.55
SNX1-211ENST00000560829 MLH3Q9UHC1 1453 aa18.45■□□□□ 0.54
SNX1-211ENST00000560829 DEPDC5O75140 1603 aa18.42■□□□□ 0.54
SNX1-211ENST00000560829 EIF2AK4Q9P2K8 1649 aaKnown RBP18.42■□□□□ 0.54
SNX1-211ENST00000560829 KIDINS220Q9ULH0 1771 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms