RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 EPRSP07814 1512 aaKnown RBP15.62■□□□□ 0.09
CUX1-218ENST00000560541 FAM9BQ8IZU0 186 aa15.62■□□□□ 0.09
CUX1-218ENST00000560541 CNGB1Q14028 1251 aaPredicted RBP15.61■□□□□ 0.09
CUX1-218ENST00000560541 TCOF1Q13428 1488 aaKnown RBP15.6■□□□□ 0.09
CUX1-218ENST00000560541 KIF21AQ7Z4S6 1674 aa15.6■□□□□ 0.09
CUX1-218ENST00000560541 ZNF644Q9H582 1327 aaPredicted RBP15.6■□□□□ 0.09
CUX1-218ENST00000560541 HECW1Q76N89 1606 aa15.59■□□□□ 0.09
CUX1-218ENST00000560541 GCC2Q8IWJ2 1684 aa15.59■□□□□ 0.09
CUX1-218ENST00000560541 NBPF8Q3BBV2 869 aa15.58■□□□□ 0.08
CUX1-218ENST00000560541 CNTLNQ9NXG0 1405 aa15.57■□□□□ 0.08
CUX1-218ENST00000560541 TARBP1Q13395 1621 aaKnown RBP15.57■□□□□ 0.08
CUX1-218ENST00000560541 IQGAP2Q13576 1575 aa15.57■□□□□ 0.08
CUX1-218ENST00000560541 MRS2Q9HD23 443 aa15.56■□□□□ 0.08
CUX1-218ENST00000560541 PKNOX2Q96KN3 472 aa15.56■□□□□ 0.08
CUX1-218ENST00000560541 PRKRIP1Q9H875 184 aaPredicted RBP15.55■□□□□ 0.08
CUX1-218ENST00000560541 SLC4A1APQ9BWU0 796 aaKnown RBP15.55■□□□□ 0.08
CUX1-218ENST00000560541 CCDC7Q96M83 1385 aa15.55■□□□□ 0.08
CUX1-218ENST00000560541 MIA2Q96PC5 1412 aa15.54■□□□□ 0.08
CUX1-218ENST00000560541 IL27Q8NEV9 243 aa15.53■□□□□ 0.08
CUX1-218ENST00000560541 POLR3GLQ9BT43 218 aa15.53■□□□□ 0.08
CUX1-218ENST00000560541 AKNAQ7Z591 1439 aa15.53■□□□□ 0.08
CUX1-218ENST00000560541 CDK11AQ9UQ88 783 aaPredicted RBP15.52■□□□□ 0.08
CUX1-218ENST00000560541 WDR62O43379 1518 aa15.52■□□□□ 0.07
CUX1-218ENST00000560541 ZNF326Q5BKZ1 582 aaKnown RBP15.52■□□□□ 0.07
CUX1-218ENST00000560541 PBRM1Q86U86 1689 aa15.52■□□□□ 0.07
CUX1-218ENST00000560541 NCOA1Q15788 1441 aa15.51■□□□□ 0.07
CUX1-218ENST00000560541 ANKRD30BQ9BXX2 1392 aa15.51■□□□□ 0.07
CUX1-218ENST00000560541 DAPK1P53355 1430 aa15.51■□□□□ 0.07
CUX1-218ENST00000560541 NBR1Q14596 966 aa15.5■□□□□ 0.07
CUX1-218ENST00000560541 SENP3-EIF4A1A0A087X0R7 540 aa15.5■□□□□ 0.07
CUX1-218ENST00000560541 KIF7Q2M1P5 1343 aa15.5■□□□□ 0.07
CUX1-218ENST00000560541 ABCC5O15440 1437 aa15.49■□□□□ 0.07
CUX1-218ENST00000560541 ADAMTS12P58397 1594 aa15.49■□□□□ 0.07
CUX1-218ENST00000560541 RPRD2Q5VT52 1461 aaKnown RBP15.48■□□□□ 0.07
CUX1-218ENST00000560541 ZNF777Q9ULD5 760 aaPredicted RBP15.48■□□□□ 0.07
CUX1-218ENST00000560541 B4GALNT3Q6L9W6 998 aa15.47■□□□□ 0.07
CUX1-218ENST00000560541 TEX14Q8IWB6 1497 aa15.46■□□□□ 0.07
CUX1-218ENST00000560541 ZNF608Q9ULD9 1512 aaPredicted RBP15.45■□□□□ 0.06
CUX1-218ENST00000560541 PPP4R2Q9NY27 417 aa15.44■□□□□ 0.06
CUX1-218ENST00000560541 ROCK1Q13464 1354 aa15.44■□□□□ 0.06
CUX1-218ENST00000560541 ERICH6BQ5W0A0 696 aa15.43■□□□□ 0.06
CUX1-218ENST00000560541 PODXL2Q9NZ53 605 aa15.43■□□□□ 0.06
CUX1-218ENST00000560541 NUP153P49790 1475 aaKnown RBP15.43■□□□□ 0.06
CUX1-218ENST00000560541 ZBED9Q6R2W3 1325 aa15.43■□□□□ 0.06
CUX1-218ENST00000560541 CFDP1Q9UEE9 299 aaPredicted RBP15.42■□□□□ 0.06
CUX1-218ENST00000560541 PRG4Q92954 1404 aaPredicted RBP15.42■□□□□ 0.06
CUX1-218ENST00000560541 SPATA31E1Q6ZUB1 1445 aa15.41■□□□□ 0.06
CUX1-218ENST00000560541 DNMT1P26358 1616 aaKnown RBP15.41■□□□□ 0.06
CUX1-218ENST00000560541 DISP1Q96F81 1524 aa15.41■□□□□ 0.06
CUX1-218ENST00000560541 MYT1LQ9UL68 1186 aa15.41■□□□□ 0.06
CUX1-218ENST00000560541 KIAA0556O60303 1618 aa15.39■□□□□ 0.05
CUX1-218ENST00000560541 PKD2Q13563 968 aa15.38■□□□□ 0.05
CUX1-218ENST00000560541 MRC2Q9UBG0 1479 aa15.38■□□□□ 0.05
CUX1-218ENST00000560541 PZPP20742 1482 aa15.38■□□□□ 0.05
CUX1-218ENST00000560541 FBLN2P98095 1184 aa15.37■□□□□ 0.05
CUX1-218ENST00000560541 FANCIQ9NVI1 1328 aa15.37■□□□□ 0.05
CUX1-218ENST00000560541 USP47Q96K76 1375 aa15.36■□□□□ 0.05
CUX1-218ENST00000560541 KIAA0586Q9BVV6 1533 aa15.36■□□□□ 0.05
CUX1-218ENST00000560541 CAMSAP2Q08AD1 1489 aa15.36■□□□□ 0.05
CUX1-218ENST00000560541 RAPGEF6Q8TEU7 1601 aa15.35■□□□□ 0.05
CUX1-218ENST00000560541 PLB1Q6P1J6 1458 aa15.35■□□□□ 0.05
CUX1-218ENST00000560541 DHX29Q7Z478 1369 aaKnown RBP15.33■□□□□ 0.04
CUX1-218ENST00000560541 TROQ12816 1431 aaPredicted RBP15.32■□□□□ 0.04
CUX1-218ENST00000560541 KDM2AQ9Y2K7 1162 aa15.32■□□□□ 0.04
CUX1-218ENST00000560541 KIAA1107Q9UPP5 1409 aa15.32■□□□□ 0.04
CUX1-218ENST00000560541 GRIN2AQ12879 1464 aa15.31■□□□□ 0.04
CUX1-218ENST00000560541 GPATCH8Q9UKJ3 1502 aaKnown RBP15.31■□□□□ 0.04
CUX1-218ENST00000560541 CHMP7Q8WUX9 453 aaPredicted RBP15.31■□□□□ 0.04
CUX1-218ENST00000560541 BCORL1Q5H9F3 1711 aa15.31■□□□□ 0.04
CUX1-218ENST00000560541 IFT140Q96RY7 1462 aa15.3■□□□□ 0.04
CUX1-218ENST00000560541 DAXXQ9UER7 740 aaPredicted RBP15.3■□□□□ 0.04
CUX1-218ENST00000560541 KIF14Q15058 1648 aa15.3■□□□□ 0.04
CUX1-218ENST00000560541 CARD11Q9BXL7 1154 aa15.29■□□□□ 0.04
CUX1-218ENST00000560541 MBD5Q9P267 1494 aa15.28■□□□□ 0.04
CUX1-218ENST00000560541 NUP155O75694 1391 aa15.28■□□□□ 0.04
CUX1-218ENST00000560541 ANKRD30AQ9BXX3 1397 aa15.28■□□□□ 0.04
CUX1-218ENST00000560541 POLR1AO95602 1720 aaPredicted RBP15.28■□□□□ 0.04
CUX1-218ENST00000560541 ANKRD50Q9ULJ7 1429 aa15.27■□□□□ 0.04
CUX1-218ENST00000560541 TMC1Q8TDI8 760 aa15.27■□□□□ 0.04
CUX1-218ENST00000560541 NUDCQ9Y266 331 aa15.27■□□□□ 0.04
CUX1-218ENST00000560541 SMG6Q86US8 1419 aaKnown RBP15.25■□□□□ 0.03
CUX1-218ENST00000560541 ST20-MTHFSA0A0A6YYL1 179 aa15.25■□□□□ 0.03
CUX1-218ENST00000560541 EIF4G3O43432 1585 aaKnown RBP15.25■□□□□ 0.03
CUX1-218ENST00000560541 DCAF11Q8TEB1 546 aa15.24■□□□□ 0.03
CUX1-218ENST00000560541 PNISRQ8TF01 805 aaKnown RBP15.24■□□□□ 0.03
CUX1-218ENST00000560541 ADGBQ8N7X0 1667 aa15.23■□□□□ 0.03
CUX1-218ENST00000560541 ITSN2Q9NZM3 1697 aa15.23■□□□□ 0.03
CUX1-218ENST00000560541 KDM5CP41229 1560 aa15.23■□□□□ 0.03
CUX1-218ENST00000560541 PLEKHD1A6NEE1 506 aa15.22■□□□□ 0.03
CUX1-218ENST00000560541 JPH4Q96JJ6 628 aa15.22■□□□□ 0.03
CUX1-218ENST00000560541 HNRNPMP52272 730 aaKnown RBP eCLIP15.22■□□□□ 0.033e-7■■■■□ 20.5
CUX1-218ENST00000560541 ADGRL2O95490 1459 aa15.21■□□□□ 0.03
CUX1-218ENST00000560541 CEP170Q5SW79 1584 aa15.21■□□□□ 0.03
CUX1-218ENST00000560541 TSPY4P0CV99 314 aa15.2■□□□□ 0.02
CUX1-218ENST00000560541 TSPY10P0CW01 314 aa15.2■□□□□ 0.02
CUX1-218ENST00000560541 C9orf84Q5VXU9 1444 aa15.2■□□□□ 0.02
CUX1-218ENST00000560541 CROCC2H7BZ55 1655 aa15.19■□□□□ 0.02
CUX1-218ENST00000560541 RTL5Q5HYW3 569 aaPredicted RBP15.18■□□□□ 0.02
CUX1-218ENST00000560541 RALGAPBQ86X10 1494 aa15.18■□□□□ 0.02
CUX1-218ENST00000560541 PAK3O75914 559 aaPredicted RBP15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms