RNA–Protein interactions for RNA: ENST00000560099.5

PSMA4-218, Transcript of proteasome subunit alpha 4, human

TSL 2

Gene PSMA4, Length 2,596 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSMA4-218	ENST00000560099	MYT1	Q01538	1121 aa		28.76	■■■□□ 2.2
PSMA4-218	ENST00000560099	DNMT1	P26358	1616 aa	Known RBP	28.76	■■■□□ 2.19
PSMA4-218	ENST00000560099	EIF4G2	P78344	907 aa	Known RBP eCLIP	28.76	■■■□□ 2.19
PSMA4-218	ENST00000560099	RAPGEF6	Q8TEU7	1601 aa		28.75	■■■□□ 2.19
PSMA4-218	ENST00000560099	GRIN2A	Q12879	1464 aa		28.74	■■■□□ 2.19
PSMA4-218	ENST00000560099	ANKRD30B	Q9BXX2	1392 aa		28.73	■■■□□ 2.19
PSMA4-218	ENST00000560099	NEFL	P07196	543 aa		28.7	■■■□□ 2.19
PSMA4-218	ENST00000560099	EIF4G3	O43432	1585 aa	Known RBP	28.7	■■■□□ 2.18
PSMA4-218	ENST00000560099	C11orf95	C9JLR9	678 aa	Predicted RBP	28.68	■■■□□ 2.18
PSMA4-218	ENST00000560099	RPRD2	Q5VT52	1461 aa	Known RBP	28.68	■■■□□ 2.18
PSMA4-218	ENST00000560099	NBPF8	Q3BBV2	869 aa		28.67	■■■□□ 2.18
PSMA4-218	ENST00000560099	CDK11A	Q9UQ88	783 aa	Predicted RBP	28.66	■■■□□ 2.18
PSMA4-218	ENST00000560099	PRG4	Q92954	1404 aa	Predicted RBP	28.65	■■■□□ 2.18
PSMA4-218	ENST00000560099	TEX14	Q8IWB6	1497 aa		28.64	■■■□□ 2.18
PSMA4-218	ENST00000560099	HNRNPU	Q00839	825 aa	Known RBP eCLIP	28.63	■■■□□ 2.17
PSMA4-218	ENST00000560099	SLC4A1AP	Q9BWU0	796 aa	Known RBP	28.63	■■■□□ 2.17
PSMA4-218	ENST00000560099	CNTLN	Q9NXG0	1405 aa		28.62	■■■□□ 2.17
PSMA4-218	ENST00000560099	NCOA1	Q15788	1441 aa		28.61	■■■□□ 2.17
PSMA4-218	ENST00000560099	TRO	Q12816	1431 aa	Predicted RBP	28.6	■■■□□ 2.17
PSMA4-218	ENST00000560099	PLB1	Q6P1J6	1458 aa		28.59	■■■□□ 2.17
PSMA4-218	ENST00000560099	CCDC7	Q96M83	1385 aa		28.59	■■■□□ 2.17
PSMA4-218	ENST00000560099	CCDC184	Q52MB2	194 aa		28.58	■■■□□ 2.17
PSMA4-218	ENST00000560099	CAMSAP2	Q08AD1	1489 aa		28.57	■■■□□ 2.16
PSMA4-218	ENST00000560099	CEP170	Q5SW79	1584 aa		28.57	■■■□□ 2.16
PSMA4-218	ENST00000560099	CFDP1	Q9UEE9	299 aa	Predicted RBP	28.57	■■■□□ 2.16
PSMA4-218	ENST00000560099	PZP	P20742	1482 aa		28.55	■■■□□ 2.16
PSMA4-218	ENST00000560099	CHMP7	Q8WUX9	453 aa	Predicted RBP	28.55	■■■□□ 2.16
PSMA4-218	ENST00000560099	GPATCH8	Q9UKJ3	1502 aa	Known RBP	28.54	■■■□□ 2.16
PSMA4-218	ENST00000560099	KIF14	Q15058	1648 aa		28.54	■■■□□ 2.16
PSMA4-218	ENST00000560099	MAGI1	Q96QZ7	1491 aa	Predicted RBP	28.53	■■■□□ 2.16
PSMA4-218	ENST00000560099	SPATA31E1	Q6ZUB1	1445 aa		28.52	■■■□□ 2.16
PSMA4-218	ENST00000560099	ZNF777	Q9ULD5	760 aa	Predicted RBP	28.51	■■■□□ 2.15
PSMA4-218	ENST00000560099	ITSN2	Q9NZM3	1697 aa		28.5	■■■□□ 2.15
PSMA4-218	ENST00000560099	PRKRIP1	Q9H875	184 aa	Predicted RBP	28.5	■■■□□ 2.15
PSMA4-218	ENST00000560099	SYNJ2	O15056	1496 aa		28.49	■■■□□ 2.15
PSMA4-218	ENST00000560099	FBLN2	P98095	1184 aa		28.49	■■■□□ 2.15
PSMA4-218	ENST00000560099	ADGB	Q8N7X0	1667 aa		28.47	■■■□□ 2.15
PSMA4-218	ENST00000560099	KIF7	Q2M1P5	1343 aa		28.46	■■■□□ 2.15
PSMA4-218	ENST00000560099	ERCC6	Q03468	1493 aa		28.46	■■■□□ 2.15
PSMA4-218	ENST00000560099	ADCY10	Q96PN6	1610 aa		28.46	■■■□□ 2.15
PSMA4-218	ENST00000560099	JPH4	Q96JJ6	628 aa		28.44	■■■□□ 2.14
PSMA4-218	ENST00000560099	CROCC2	H7BZ55	1655 aa		28.43	■■■□□ 2.14
PSMA4-218	ENST00000560099	ADGRL2	O95490	1459 aa		28.43	■■■□□ 2.14
PSMA4-218	ENST00000560099	POLR1A	O95602	1720 aa	Predicted RBP	28.43	■■■□□ 2.14
PSMA4-218	ENST00000560099	IRX6	P78412	446 aa	Predicted RBP	28.4	■■■□□ 2.14
PSMA4-218	ENST00000560099	CARMIL2	Q6F5E8	1435 aa		28.4	■■■□□ 2.14
PSMA4-218	ENST00000560099	KIAA1107	Q9UPP5	1409 aa		28.4	■■■□□ 2.14
PSMA4-218	ENST00000560099	NUP160	Q12769	1436 aa		28.39	■■■□□ 2.14
PSMA4-218	ENST00000560099	FAM9B	Q8IZU0	186 aa		28.38	■■■□□ 2.13
PSMA4-218	ENST00000560099	MBD5	Q9P267	1494 aa		28.38	■■■□□ 2.13
PSMA4-218	ENST00000560099	PKD2	Q13563	968 aa		28.38	■■■□□ 2.13
PSMA4-218	ENST00000560099	MRS2	Q9HD23	443 aa		28.37	■■■□□ 2.13
PSMA4-218	ENST00000560099	ANKRD30A	Q9BXX3	1397 aa		28.36	■■■□□ 2.13
PSMA4-218	ENST00000560099	RBM19	Q9Y4C8	960 aa	Known RBP	28.35	■■■□□ 2.13
PSMA4-218	ENST00000560099	CDC42BPA	Q5VT25	1732 aa		28.34	■■■□□ 2.13
PSMA4-218	ENST00000560099	ANKRD50	Q9ULJ7	1429 aa		28.33	■■■□□ 2.13
PSMA4-218	ENST00000560099	PLEKHD1	A6NEE1	506 aa		28.31	■■■□□ 2.12
PSMA4-218	ENST00000560099	ZNF326	Q5BKZ1	582 aa	Known RBP	28.31	■■■□□ 2.12
PSMA4-218	ENST00000560099	ABCA8	O94911	1581 aa		28.3	■■■□□ 2.12
PSMA4-218	ENST00000560099	ABCC10	Q5T3U5	1492 aa		28.3	■■■□□ 2.12
PSMA4-218	ENST00000560099	BCORL1	Q5H9F3	1711 aa		28.29	■■■□□ 2.12
PSMA4-218	ENST00000560099	ATP10B	O94823	1461 aa		28.29	■■■□□ 2.12
PSMA4-218	ENST00000560099	USP47	Q96K76	1375 aa		28.27	■■■□□ 2.12
PSMA4-218	ENST00000560099	ZBED9	Q6R2W3	1325 aa		28.24	■■■□□ 2.11
PSMA4-218	ENST00000560099	C9orf84	Q5VXU9	1444 aa		28.24	■■■□□ 2.11
PSMA4-218	ENST00000560099	DHX29	Q7Z478	1369 aa	Known RBP	28.24	■■■□□ 2.11
PSMA4-218	ENST00000560099	ANP32E	Q9BTT0	268 aa		28.24	■■■□□ 2.11
PSMA4-218	ENST00000560099	NUP155	O75694	1391 aa		28.24	■■■□□ 2.11
PSMA4-218	ENST00000560099	KDM5C	P41229	1560 aa		28.21	■■■□□ 2.11
PSMA4-218	ENST00000560099	SHANK2	Q9UPX8	1470 aa		28.21	■■■□□ 2.11
PSMA4-218	ENST00000560099	POLR3GL	Q9BT43	218 aa		28.2	■■■□□ 2.1
PSMA4-218	ENST00000560099	CNGB1	Q14028	1251 aa	Predicted RBP	28.18	■■■□□ 2.1
PSMA4-218	ENST00000560099	HNRNPM	P52272	730 aa	Known RBP eCLIP	28.16	■■■□□ 2.1
PSMA4-218	ENST00000560099	TSPY4	P0CV99	314 aa		28.16	■■■□□ 2.1
PSMA4-218	ENST00000560099	TSPY10	P0CW01	314 aa		28.16	■■■□□ 2.1
PSMA4-218	ENST00000560099	UHRF1BP1	Q6BDS2	1440 aa		28.16	■■■□□ 2.1
PSMA4-218	ENST00000560099	ERICH6B	Q5W0A0	696 aa		28.14	■■■□□ 2.1
PSMA4-218	ENST00000560099	RALGAPB	Q86X10	1494 aa		28.12	■■■□□ 2.09
PSMA4-218	ENST00000560099	KDM5D	Q9BY66	1539 aa		28.12	■■■□□ 2.09
PSMA4-218	ENST00000560099	KIF15	Q9NS87	1388 aa		28.12	■■■□□ 2.09
PSMA4-218	ENST00000560099	PPP4R2	Q9NY27	417 aa		28.11	■■■□□ 2.09
PSMA4-218	ENST00000560099	ARID4B	Q4LE39	1312 aa	Predicted RBP	28.09	■■■□□ 2.09
PSMA4-218	ENST00000560099	CARD11	Q9BXL7	1154 aa		28.09	■■■□□ 2.09
PSMA4-218	ENST00000560099	KDM2A	Q9Y2K7	1162 aa		28.08	■■■□□ 2.09
PSMA4-218	ENST00000560099	ARHGEF12	Q9NZN5	1544 aa		28.08	■■■□□ 2.09
PSMA4-218	ENST00000560099	PTPRG	P23470	1445 aa		28.07	■■■□□ 2.08
PSMA4-218	ENST00000560099	ARHGEF5	Q12774	1597 aa		28.07	■■■□□ 2.08
PSMA4-218	ENST00000560099	CDC42BPB	Q9Y5S2	1711 aa		28.04	■■■□□ 2.08
PSMA4-218	ENST00000560099	SAMD9L	Q8IVG5	1584 aa		28.03	■■■□□ 2.08
PSMA4-218	ENST00000560099	DCAF11	Q8TEB1	546 aa		28.03	■■■□□ 2.08
PSMA4-218	ENST00000560099	ST20-MTHFS	A0A0A6YYL1	179 aa		28.02	■■■□□ 2.08
PSMA4-218	ENST00000560099	ROCK2	O75116	1388 aa	Known RBP	27.99	■■■□□ 2.07
PSMA4-218	ENST00000560099	CCDC141	Q6ZP82	1450 aa		27.99	■■■□□ 2.07
PSMA4-218	ENST00000560099	B4GALNT3	Q6L9W6	998 aa		27.99	■■■□□ 2.07
PSMA4-218	ENST00000560099	PREX2	Q70Z35	1606 aa		27.98	■■■□□ 2.07
PSMA4-218	ENST00000560099	SMG6	Q86US8	1419 aa	Known RBP	27.97	■■■□□ 2.07
PSMA4-218	ENST00000560099	MSH5	O43196	834 aa		27.97	■■■□□ 2.07
PSMA4-218	ENST00000560099	FAM135A	Q9P2D6	1515 aa		27.96	■■■□□ 2.07
PSMA4-218	ENST00000560099	PNISR	Q8TF01	805 aa	Known RBP	27.96	■■■□□ 2.07
PSMA4-218	ENST00000560099	SENP3-EIF4A1	A0A087X0R7	540 aa		27.95	■■■□□ 2.07

Retrieved 100 of 20,778 RNA–protein pairs in 222.7 ms