RNA–Protein interactions for RNA: ENST00000558768.5

TRPM1-208, Transcript of transient receptor potential cation channel subfamily M member 1, human

APPRIS ALT2 TSL 1 (best)

Gene TRPM1, Length 4,581 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRPM1-208	ENST00000558768	NCBP3	Q53F19	620 aa	Known RBP	12.25	□□□□□ -0.45
TRPM1-208	ENST00000558768	FAM13B	Q9NYF5	915 aa		12.25	□□□□□ -0.45
TRPM1-208	ENST00000558768	MS4A1	P11836	297 aa		12.24	□□□□□ -0.45
TRPM1-208	ENST00000558768	SYAP1	Q96A49	352 aa	Predicted RBP	12.24	□□□□□ -0.45
TRPM1-208	ENST00000558768	TPRN	Q4KMQ1	711 aa		12.24	□□□□□ -0.45
TRPM1-208	ENST00000558768	PRKRIP1	Q9H875	184 aa	Predicted RBP	12.24	□□□□□ -0.45
TRPM1-208	ENST00000558768	CCDC66	A2RUB6	948 aa		12.23	□□□□□ -0.45
TRPM1-208	ENST00000558768	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.23	□□□□□ -0.45
TRPM1-208	ENST00000558768	NOC3L	Q8WTT2	800 aa	Known RBP	12.23	□□□□□ -0.45
TRPM1-208	ENST00000558768	NOM1	Q5C9Z4	860 aa	Known RBP	12.22	□□□□□ -0.45
TRPM1-208	ENST00000558768	MTUS2	Q5JR59	1369 aa		12.22	□□□□□ -0.45
TRPM1-208	ENST00000558768	FHAD1	B1AJZ9	1412 aa		12.21	□□□□□ -0.45
TRPM1-208	ENST00000558768	GPS2	Q13227	327 aa		12.21	□□□□□ -0.45
TRPM1-208	ENST00000558768	TEX35	Q5T0J7	233 aa		12.21	□□□□□ -0.46
TRPM1-208	ENST00000558768	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	12.2	□□□□□ -0.46
TRPM1-208	ENST00000558768	ZBTB7C	A1YPR0	619 aa		12.2	□□□□□ -0.46
TRPM1-208	ENST00000558768	CFAP44	Q96MT7	982 aa		12.19	□□□□□ -0.46
TRPM1-208	ENST00000558768	CSPP1	Q1MSJ5	1256 aa		12.19	□□□□□ -0.46
TRPM1-208	ENST00000558768	SLK	Q9H2G2	1235 aa	Predicted RBP	12.19	□□□□□ -0.46
TRPM1-208	ENST00000558768	WDR97	A6NE52	1622 aa		12.19	□□□□□ -0.46
TRPM1-208	ENST00000558768	BRPF3	Q9ULD4	1205 aa		12.18	□□□□□ -0.46
TRPM1-208	ENST00000558768	CALD1	Q05682	793 aa	Known RBP	12.18	□□□□□ -0.46
TRPM1-208	ENST00000558768	FAM43A	Q8N2R8	423 aa		12.18	□□□□□ -0.46
TRPM1-208	ENST00000558768	RCAN3	Q9UKA8	241 aa		12.18	□□□□□ -0.46
TRPM1-208	ENST00000558768	CHIC2	Q9UKJ5	165 aa		12.18	□□□□□ -0.46
TRPM1-208	ENST00000558768	RRP9	O43818	475 aa	Known RBP	12.17	□□□□□ -0.46
TRPM1-208	ENST00000558768	BCL11B	Q9C0K0	894 aa	Predicted RBP	12.17	□□□□□ -0.46
TRPM1-208	ENST00000558768	SMARCA2	P51531	1590 aa		12.17	□□□□□ -0.46
TRPM1-208	ENST00000558768	CHMP4B	Q9H444	224 aa	Known RBP	12.16	□□□□□ -0.46
TRPM1-208	ENST00000558768	TPM2	P07951	284 aa		12.16	□□□□□ -0.46
TRPM1-208	ENST00000558768	RRP7BP	Q9NSQ0	103 aa		12.16	□□□□□ -0.46
TRPM1-208	ENST00000558768	ZMYND15	Q9H091	742 aa		12.16	□□□□□ -0.46
TRPM1-208	ENST00000558768	ARHGAP35	Q9NRY4	1499 aa		12.16	□□□□□ -0.46
TRPM1-208	ENST00000558768	NFKBIB	Q15653	356 aa		12.15	□□□□□ -0.46
TRPM1-208	ENST00000558768	SENP3-EIF4A1	A0A087X0R7	540 aa		12.15	□□□□□ -0.46
TRPM1-208	ENST00000558768	C11orf95	C9JLR9	678 aa	Predicted RBP	12.15	□□□□□ -0.46
TRPM1-208	ENST00000558768	FTSJ3	Q8IY81	847 aa	Known RBP	12.14	□□□□□ -0.47
TRPM1-208	ENST00000558768	CNTLN	Q9NXG0	1405 aa		12.13	□□□□□ -0.47
TRPM1-208	ENST00000558768	DDX11L8	A8MPP1	907 aa		12.13	□□□□□ -0.47
TRPM1-208	ENST00000558768	PDE3B	Q13370	1112 aa		12.13	□□□□□ -0.47
TRPM1-208	ENST00000558768	SPRYD3	Q8NCJ5	442 aa		12.12	□□□□□ -0.47
TRPM1-208	ENST00000558768	FRAT1	Q92837	279 aa	Predicted RBP	12.12	□□□□□ -0.47
TRPM1-208	ENST00000558768	CUX2	O14529	1486 aa		12.12	□□□□□ -0.47
TRPM1-208	ENST00000558768	HAP1	P54257	671 aa	Predicted RBP	12.12	□□□□□ -0.47
TRPM1-208	ENST00000558768	WASHC2A	Q641Q2	1341 aa		12.12	□□□□□ -0.47
TRPM1-208	ENST00000558768	RRP1	P56182	461 aa	Known RBP	12.11	□□□□□ -0.47
TRPM1-208	ENST00000558768	CWC15	Q9P013	229 aa	Known RBP	12.11	□□□□□ -0.47
TRPM1-208	ENST00000558768	TAF7L	Q5H9L4	462 aa		12.1	□□□□□ -0.47
TRPM1-208	ENST00000558768	TAF3	Q5VWG9	929 aa		12.1	□□□□□ -0.47
TRPM1-208	ENST00000558768	EXOC6	Q8TAG9	804 aa		12.1	□□□□□ -0.47
TRPM1-208	ENST00000558768	PHF14	O94880	888 aa		12.1	□□□□□ -0.47
TRPM1-208	ENST00000558768	BACH2	Q9BYV9	841 aa		12.1	□□□□□ -0.47
TRPM1-208	ENST00000558768	FMN1	Q68DA7	1419 aa		12.1	□□□□□ -0.47
TRPM1-208	ENST00000558768	SMG6	Q86US8	1419 aa	Known RBP	12.1	□□□□□ -0.47
TRPM1-208	ENST00000558768	SKOR2	Q2VWA4	1001 aa	Predicted RBP	12.1	□□□□□ -0.47
TRPM1-208	ENST00000558768	MCC	P23508	829 aa		12.08	□□□□□ -0.48
TRPM1-208	ENST00000558768	ARAP1	Q96P48	1450 aa		12.07	□□□□□ -0.48
TRPM1-208	ENST00000558768	CCDC7	Q96M83	1385 aa		12.07	□□□□□ -0.48
TRPM1-208	ENST00000558768	TPM4	P67936	248 aa		12.07	□□□□□ -0.48
TRPM1-208	ENST00000558768	AEBP2	Q6ZN18	517 aa	Predicted RBP	12.07	□□□□□ -0.48
TRPM1-208	ENST00000558768	L3MBTL2	Q969R5	705 aa		12.06	□□□□□ -0.48
TRPM1-208	ENST00000558768	SMARCA4	P51532	1647 aa		12.06	□□□□□ -0.48
TRPM1-208	ENST00000558768	SLC4A3	P48751	1232 aa		12.06	□□□□□ -0.48
TRPM1-208	ENST00000558768	FGD1	P98174	961 aa		12.06	□□□□□ -0.48
TRPM1-208	ENST00000558768	FAM161A	Q3B820	660 aa		12.06	□□□□□ -0.48
TRPM1-208	ENST00000558768	RBM10	P98175	930 aa	Known RBP	12.06	□□□□□ -0.48
TRPM1-208	ENST00000558768	ERICH3	Q5RHP9	1530 aa		12.06	□□□□□ -0.48
TRPM1-208	ENST00000558768	RALBP1	Q15311	655 aa		12.05	□□□□□ -0.48
TRPM1-208	ENST00000558768	WASHC2C	Q9Y4E1	1318 aa		12.05	□□□□□ -0.48
TRPM1-208	ENST00000558768	TULP1	O00294	542 aa	Predicted RBP	12.05	□□□□□ -0.48
TRPM1-208	ENST00000558768	RDX	P35241	583 aa	Known RBP	12.05	□□□□□ -0.48
TRPM1-208	ENST00000558768	STK11IP	Q8N1F8	1099 aa		12.05	□□□□□ -0.48
TRPM1-208	ENST00000558768	AKNA	Q7Z591	1439 aa		12.05	□□□□□ -0.48
TRPM1-208	ENST00000558768	UACA	Q9BZF9	1416 aa		12.05	□□□□□ -0.48
TRPM1-208	ENST00000558768	CCDC18	Q5T9S5	1454 aa		12.05	□□□□□ -0.48
TRPM1-208	ENST00000558768	CCDC184	Q52MB2	194 aa		12.03	□□□□□ -0.48
TRPM1-208	ENST00000558768	DIAPH3	Q9NSV4	1193 aa		12.03	□□□□□ -0.48
TRPM1-208	ENST00000558768	PHLDB1	Q86UU1	1377 aa		12.03	□□□□□ -0.48
TRPM1-208	ENST00000558768	CENPQ	Q7L2Z9	268 aa	Predicted RBP	12.02	□□□□□ -0.48
TRPM1-208	ENST00000558768	CARMIL1	Q5VZK9	1371 aa		12.02	□□□□□ -0.48
TRPM1-208	ENST00000558768	ROCK2	O75116	1388 aa	Known RBP	12.02	□□□□□ -0.49
TRPM1-208	ENST00000558768	MAPKBP1	O60336	1514 aa		12.02	□□□□□ -0.49
TRPM1-208	ENST00000558768	MPHOSPH9	Q99550	1183 aa		12.02	□□□□□ -0.49
TRPM1-208	ENST00000558768	PATL2	C9JE40	543 aa	Known RBP	12.01	□□□□□ -0.49
TRPM1-208	ENST00000558768	RRP12	Q5JTH9	1297 aa	Known RBP	12.01	□□□□□ -0.49
TRPM1-208	ENST00000558768	ARGLU1	Q9NWB6	273 aa	Predicted RBP	12.01	□□□□□ -0.49
TRPM1-208	ENST00000558768	TPM3	P06753	285 aa		12.01	□□□□□ -0.49
TRPM1-208	ENST00000558768	EIF4G1	Q04637	1599 aa	Known RBP	12.01	□□□□□ -0.49
TRPM1-208	ENST00000558768	LRRC9	Q6ZRR7	1453 aa		12.01	□□□□□ -0.49
TRPM1-208	ENST00000558768	KCNJ4	P48050	445 aa		12.01	□□□□□ -0.49
TRPM1-208	ENST00000558768	CARD11	Q9BXL7	1154 aa		12.01	□□□□□ -0.49
TRPM1-208	ENST00000558768	HMGN5	P82970	282 aa	Known RBP	12	□□□□□ -0.49
TRPM1-208	ENST00000558768	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	12	□□□□□ -0.49
TRPM1-208	ENST00000558768	DDX49	Q9Y6V7	483 aa	Known RBP	12	□□□□□ -0.49
TRPM1-208	ENST00000558768	CCDC191	Q8NCU4	936 aa		12	□□□□□ -0.49
TRPM1-208	ENST00000558768	TSPYL1	Q9H0U9	437 aa		12	□□□□□ -0.49
TRPM1-208	ENST00000558768	HOMEZ	Q8IX15	550 aa		11.99	□□□□□ -0.49
TRPM1-208	ENST00000558768	R3HCC1	Q9Y3T6	440 aa	Known RBP	11.99	□□□□□ -0.49
TRPM1-208	ENST00000558768	DEF6	Q9H4E7	631 aa		11.99	□□□□□ -0.49
TRPM1-208	ENST00000558768		H0YHG0	523 aa		11.99	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms