RNA–Protein interactions for RNA: ENST00000557439.5

XRCC3-218, Transcript of X-ray repair cross complementing 3, humanhuman

TSL 5

Gene XRCC3, Length 2,599 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3-218ENST00000557439 AKNAQ7Z591 1439 aa24.8■■□□□ 1.56
XRCC3-218ENST00000557439 PRG4Q92954 1404 aaPredicted RBP24.78■■□□□ 1.56
XRCC3-218ENST00000557439 EIF4G2P78344 907 aaKnown RBP eCLIP24.78■■□□□ 1.56
XRCC3-218ENST00000557439 GRIN2AQ12879 1464 aa24.77■■□□□ 1.56
XRCC3-218ENST00000557439 NBPF8Q3BBV2 869 aa24.77■■□□□ 1.56
XRCC3-218ENST00000557439 ZNF777Q9ULD5 760 aaPredicted RBP24.77■■□□□ 1.56
XRCC3-218ENST00000557439 EIF4G3O43432 1585 aaKnown RBP24.76■■□□□ 1.55
XRCC3-218ENST00000557439 CCDC184Q52MB2 194 aa24.75■■□□□ 1.55
XRCC3-218ENST00000557439 SLC4A1APQ9BWU0 796 aaKnown RBP24.75■■□□□ 1.55
XRCC3-218ENST00000557439 HNRNPUQ00839 825 aaKnown RBP eCLIP24.75■■□□□ 1.55
XRCC3-218ENST00000557439 RAPGEF6Q8TEU7 1601 aa24.74■■□□□ 1.55
XRCC3-218ENST00000557439 PLB1Q6P1J6 1458 aa24.73■■□□□ 1.55
XRCC3-218ENST00000557439 NEFLP07196 543 aa24.72■■□□□ 1.55
XRCC3-218ENST00000557439 CHMP7Q8WUX9 453 aaPredicted RBP24.72■■□□□ 1.55
XRCC3-218ENST00000557439 ANKRD30BQ9BXX2 1392 aa24.72■■□□□ 1.55
XRCC3-218ENST00000557439 DNMT1P26358 1616 aaKnown RBP24.71■■□□□ 1.55
XRCC3-218ENST00000557439 CFDP1Q9UEE9 299 aaPredicted RBP24.69■■□□□ 1.54
XRCC3-218ENST00000557439 CDK11AQ9UQ88 783 aaPredicted RBP24.69■■□□□ 1.54
XRCC3-218ENST00000557439 ROCK1Q13464 1354 aa24.67■■□□□ 1.54
XRCC3-218ENST00000557439 IRX6P78412 446 aaPredicted RBP24.67■■□□□ 1.54
XRCC3-218ENST00000557439 ERCC6Q03468 1493 aa24.66■■□□□ 1.54
XRCC3-218ENST00000557439 RPRD2Q5VT52 1461 aaKnown RBP24.65■■□□□ 1.54
XRCC3-218ENST00000557439 CEP170Q5SW79 1584 aa24.65■■□□□ 1.54
XRCC3-218ENST00000557439 KIF14Q15058 1648 aa24.64■■□□□ 1.53
XRCC3-218ENST00000557439 CNGB1Q14028 1251 aaPredicted RBP24.64■■□□□ 1.53
XRCC3-218ENST00000557439 CAMSAP2Q08AD1 1489 aa24.63■■□□□ 1.53
XRCC3-218ENST00000557439 TEX14Q8IWB6 1497 aa24.63■■□□□ 1.53
XRCC3-218ENST00000557439 TROQ12816 1431 aaPredicted RBP24.62■■□□□ 1.53
XRCC3-218ENST00000557439 CNTLNQ9NXG0 1405 aa24.61■■□□□ 1.53
XRCC3-218ENST00000557439 CCDC7Q96M83 1385 aa24.61■■□□□ 1.53
XRCC3-218ENST00000557439 ZNF326Q5BKZ1 582 aaKnown RBP24.61■■□□□ 1.53
XRCC3-218ENST00000557439 NCOA1Q15788 1441 aa24.59■■□□□ 1.53
XRCC3-218ENST00000557439 GPATCH8Q9UKJ3 1502 aaKnown RBP24.59■■□□□ 1.53
XRCC3-218ENST00000557439 PZPP20742 1482 aa24.58■■□□□ 1.53
XRCC3-218ENST00000557439 FAM9BQ8IZU0 186 aa24.58■■□□□ 1.53
XRCC3-218ENST00000557439 JPH4Q96JJ6 628 aa24.58■■□□□ 1.53
XRCC3-218ENST00000557439 PRKRIP1Q9H875 184 aaPredicted RBP24.55■■□□□ 1.52
XRCC3-218ENST00000557439 KIF7Q2M1P5 1343 aa24.55■■□□□ 1.52
XRCC3-218ENST00000557439 POLR3GLQ9BT43 218 aa24.55■■□□□ 1.52
XRCC3-218ENST00000557439 SYNJ2O15056 1496 aa24.54■■□□□ 1.52
XRCC3-218ENST00000557439 PKD2Q13563 968 aa24.53■■□□□ 1.52
XRCC3-218ENST00000557439 MAGI1Q96QZ7 1491 aaPredicted RBP24.52■■□□□ 1.52
XRCC3-218ENST00000557439 MRS2Q9HD23 443 aa24.51■■□□□ 1.51
XRCC3-218ENST00000557439 SPATA31E1Q6ZUB1 1445 aa24.49■■□□□ 1.51
XRCC3-218ENST00000557439 ITSN2Q9NZM3 1697 aa24.47■■□□□ 1.51
XRCC3-218ENST00000557439 CARMIL2Q6F5E8 1435 aa24.46■■□□□ 1.51
XRCC3-218ENST00000557439 SENP3-EIF4A1A0A087X0R7 540 aa24.45■■□□□ 1.5
XRCC3-218ENST00000557439 PLEKHD1A6NEE1 506 aa24.45■■□□□ 1.5
XRCC3-218ENST00000557439 ADGBQ8N7X0 1667 aa24.44■■□□□ 1.5
XRCC3-218ENST00000557439 KIAA1107Q9UPP5 1409 aa24.43■■□□□ 1.5
XRCC3-218ENST00000557439 ANKRD30AQ9BXX3 1397 aa24.42■■□□□ 1.5
XRCC3-218ENST00000557439 NUP160Q12769 1436 aa24.42■■□□□ 1.5
XRCC3-218ENST00000557439 ANKRD50Q9ULJ7 1429 aa24.42■■□□□ 1.5
XRCC3-218ENST00000557439 MYT1Q01538 1121 aa24.41■■□□□ 1.5
XRCC3-218ENST00000557439 RBM19Q9Y4C8 960 aaKnown RBP24.41■■□□□ 1.5
XRCC3-218ENST00000557439 CROCC2H7BZ55 1655 aa24.41■■□□□ 1.5
XRCC3-218ENST00000557439 HNRNPMP52272 730 aaKnown RBP eCLIP24.41■■□□□ 1.55e-6■■■■□ 20.3
XRCC3-218ENST00000557439 ADCY10Q96PN6 1610 aa24.41■■□□□ 1.5
XRCC3-218ENST00000557439 ATP10BO94823 1461 aa24.4■■□□□ 1.5
XRCC3-218ENST00000557439 NUP155O75694 1391 aa24.39■■□□□ 1.49
XRCC3-218ENST00000557439 CDC42BPAQ5VT25 1732 aa24.39■■□□□ 1.49
XRCC3-218ENST00000557439 ADGRL2O95490 1459 aa24.39■■□□□ 1.49
XRCC3-218ENST00000557439 USP47Q96K76 1375 aa24.38■■□□□ 1.49
XRCC3-218ENST00000557439 KDM2AQ9Y2K7 1162 aa24.38■■□□□ 1.49
XRCC3-218ENST00000557439 BCORL1Q5H9F3 1711 aa24.37■■□□□ 1.49
XRCC3-218ENST00000557439 MBD5Q9P267 1494 aa24.37■■□□□ 1.49
XRCC3-218ENST00000557439 C9orf84Q5VXU9 1444 aa24.35■■□□□ 1.49
XRCC3-218ENST00000557439 ABCC10Q5T3U5 1492 aa24.34■■□□□ 1.49
XRCC3-218ENST00000557439 ABCA8O94911 1581 aa24.33■■□□□ 1.49
XRCC3-218ENST00000557439 POLR1AO95602 1720 aaPredicted RBP24.32■■□□□ 1.48
XRCC3-218ENST00000557439 TSPY4P0CV99 314 aa24.31■■□□□ 1.48
XRCC3-218ENST00000557439 TSPY10P0CW01 314 aa24.31■■□□□ 1.48
XRCC3-218ENST00000557439 DHX29Q7Z478 1369 aaKnown RBP24.3■■□□□ 1.48
XRCC3-218ENST00000557439 CARD11Q9BXL7 1154 aa24.27■■□□□ 1.48
XRCC3-218ENST00000557439 ZBED9Q6R2W3 1325 aa24.27■■□□□ 1.48
XRCC3-218ENST00000557439 KIF15Q9NS87 1388 aa24.27■■□□□ 1.48
XRCC3-218ENST00000557439 DCAF11Q8TEB1 546 aa24.25■■□□□ 1.47
XRCC3-218ENST00000557439 ANP32EQ9BTT0 268 aa24.25■■□□□ 1.47
XRCC3-218ENST00000557439 KDM5CP41229 1560 aa24.25■■□□□ 1.47
XRCC3-218ENST00000557439 PTPRGP23470 1445 aa24.22■■□□□ 1.47
XRCC3-218ENST00000557439 ST20-MTHFSA0A0A6YYL1 179 aa24.22■■□□□ 1.47
XRCC3-218ENST00000557439 B4GALNT3Q6L9W6 998 aa24.22■■□□□ 1.47
XRCC3-218ENST00000557439 SHANK2Q9UPX8 1470 aa24.19■■□□□ 1.46
XRCC3-218ENST00000557439 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.18■■□□□ 1.46
XRCC3-218ENST00000557439 RGL3Q3MIN7 710 aa24.17■■□□□ 1.46
XRCC3-218ENST00000557439 RALGAPBQ86X10 1494 aa24.16■■□□□ 1.46
XRCC3-218ENST00000557439 SAMD9LQ8IVG5 1584 aa24.16■■□□□ 1.46
XRCC3-218ENST00000557439 PPP4R2Q9NY27 417 aa24.16■■□□□ 1.46
XRCC3-218ENST00000557439 UHRF1BP1Q6BDS2 1440 aa24.15■■□□□ 1.46
XRCC3-218ENST00000557439 CDC42BPBQ9Y5S2 1711 aa24.14■■□□□ 1.46
XRCC3-218ENST00000557439 MSH5O43196 834 aa24.11■■□□□ 1.45
XRCC3-218ENST00000557439 KDM5DQ9BY66 1539 aa24.1■■□□□ 1.45
XRCC3-218ENST00000557439 CCDC141Q6ZP82 1450 aa24.1■■□□□ 1.45
XRCC3-218ENST00000557439 FAM135AQ9P2D6 1515 aa24.09■■□□□ 1.45
XRCC3-218ENST00000557439 TMC1Q8TDI8 760 aa24.09■■□□□ 1.45
XRCC3-218ENST00000557439 ROCK2O75116 1388 aaKnown RBP24.09■■□□□ 1.45
XRCC3-218ENST00000557439 NBPF1Q3BBV0 1214 aa24.08■■□□□ 1.45
XRCC3-218ENST00000557439 SYCP2Q9BX26 1530 aa24.08■■□□□ 1.45
XRCC3-218ENST00000557439 ARHGEF5Q12774 1597 aa24.08■■□□□ 1.45
XRCC3-218ENST00000557439 PNISRQ8TF01 805 aaKnown RBP24.07■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms