RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 TROQ12816 1431 aaPredicted RBP8.5□□□□□ -1.05
SYNE2-225ENST00000557060 DDX10Q13206 875 aaKnown RBP8.5□□□□□ -1.05
SYNE2-225ENST00000557060 MPHOSPH9Q99550 1183 aa8.5□□□□□ -1.05
SYNE2-225ENST00000557060 ATP10BO94823 1461 aa8.49□□□□□ -1.05
SYNE2-225ENST00000557060 ARHGEF11O15085 1522 aa8.49□□□□□ -1.05
SYNE2-225ENST00000557060 ERCC6L2Q5T890 1561 aa8.49□□□□□ -1.05
SYNE2-225ENST00000557060 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.49□□□□□ -1.05
SYNE2-225ENST00000557060 CHD1O14646 1710 aa8.48□□□□□ -1.05
SYNE2-225ENST00000557060 KIF14Q15058 1648 aa8.48□□□□□ -1.05
SYNE2-225ENST00000557060 TSPY4P0CV99 314 aa8.48□□□□□ -1.05
SYNE2-225ENST00000557060 TSPY10P0CW01 314 aa8.48□□□□□ -1.05
SYNE2-225ENST00000557060 MYT1LQ9UL68 1186 aa8.48□□□□□ -1.05
SYNE2-225ENST00000557060 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.47□□□□□ -1.05
SYNE2-225ENST00000557060 ABCC5O15440 1437 aa8.47□□□□□ -1.05
SYNE2-225ENST00000557060 DAPK1P53355 1430 aa8.47□□□□□ -1.05
SYNE2-225ENST00000557060 CNGB1Q14028 1251 aaPredicted RBP8.47□□□□□ -1.05
SYNE2-225ENST00000557060 UACAQ9BZF9 1416 aa8.47□□□□□ -1.05
SYNE2-225ENST00000557060 PPP1R15AO75807 674 aaPredicted RBP8.46□□□□□ -1.05
SYNE2-225ENST00000557060 MIA2Q96PC5 1412 aa8.46□□□□□ -1.05
SYNE2-225ENST00000557060 KDM6BO15054 1643 aa8.46□□□□□ -1.06
SYNE2-225ENST00000557060 GPATCH8Q9UKJ3 1502 aaKnown RBP8.46□□□□□ -1.06
SYNE2-225ENST00000557060 CAMSAP2Q08AD1 1489 aa8.45□□□□□ -1.06
SYNE2-225ENST00000557060 CENPBP07199 599 aaPredicted RBP8.44□□□□□ -1.06
SYNE2-225ENST00000557060 SCAF1Q9H7N4 1312 aaKnown RBP8.43□□□□□ -1.06
SYNE2-225ENST00000557060 L3MBTL2Q969R5 705 aa8.43□□□□□ -1.06
SYNE2-225ENST00000557060 POLR3GLQ9BT43 218 aa8.43□□□□□ -1.06
SYNE2-225ENST00000557060 TCOF1Q13428 1488 aaKnown RBP8.43□□□□□ -1.06
SYNE2-225ENST00000557060 PKD2Q13563 968 aa8.42□□□□□ -1.06
SYNE2-225ENST00000557060 ABCA8O94911 1581 aa8.41□□□□□ -1.06
SYNE2-225ENST00000557060 KDM2AQ9Y2K7 1162 aa8.41□□□□□ -1.06
SYNE2-225ENST00000557060 ACIN1Q9UKV3 1341 aaKnown RBP8.41□□□□□ -1.06
SYNE2-225ENST00000557060 NUP155O75694 1391 aa8.4□□□□□ -1.06
SYNE2-225ENST00000557060 ANKRD30AQ9BXX3 1397 aa8.4□□□□□ -1.06
SYNE2-225ENST00000557060 NCOA1Q15788 1441 aa8.39□□□□□ -1.07
SYNE2-225ENST00000557060 OSCARQ8IYS5 282 aa8.39□□□□□ -1.07
SYNE2-225ENST00000557060 GTF3C3Q9Y5Q9 886 aa8.39□□□□□ -1.07
SYNE2-225ENST00000557060 RGL3Q3MIN7 710 aa8.39□□□□□ -1.07
SYNE2-225ENST00000557060 C9orf84Q5VXU9 1444 aa8.38□□□□□ -1.07
SYNE2-225ENST00000557060 AKNAQ7Z591 1439 aa8.38□□□□□ -1.07
SYNE2-225ENST00000557060 AFAP1Q8N556 730 aa8.38□□□□□ -1.07
SYNE2-225ENST00000557060 KIF15Q9NS87 1388 aa8.38□□□□□ -1.07
SYNE2-225ENST00000557060 ANKRD50Q9ULJ7 1429 aa8.38□□□□□ -1.07
SYNE2-225ENST00000557060 DENND4BO75064 1496 aaPredicted RBP8.38□□□□□ -1.07
SYNE2-225ENST00000557060 ARHGAP5Q13017 1502 aa8.38□□□□□ -1.07
SYNE2-225ENST00000557060 DNMT1P26358 1616 aaKnown RBP8.37□□□□□ -1.07
SYNE2-225ENST00000557060 TIMELESSQ9UNS1 1208 aa8.37□□□□□ -1.07
SYNE2-225ENST00000557060 ROCK1Q13464 1354 aa8.36□□□□□ -1.07
SYNE2-225ENST00000557060 NPM1P06748 294 aaKnown RBP eCLIP8.36□□□□□ -1.07
SYNE2-225ENST00000557060 HSPA5P11021 654 aaKnown RBP8.36□□□□□ -1.07
SYNE2-225ENST00000557060 ABCC10Q5T3U5 1492 aa8.36□□□□□ -1.07
SYNE2-225ENST00000557060 NBPF8Q3BBV2 869 aa8.36□□□□□ -1.07
SYNE2-225ENST00000557060 NPM3O75607 178 aaKnown RBP8.35□□□□□ -1.07
SYNE2-225ENST00000557060 EFCAB2Q5VUJ9 269 aa8.35□□□□□ -1.07
SYNE2-225ENST00000557060 ITSN2Q9NZM3 1697 aa8.34□□□□□ -1.07
SYNE2-225ENST00000557060 CYB5RLQ6IPT4 315 aa8.34□□□□□ -1.07
SYNE2-225ENST00000557060 CDC42BPAQ5VT25 1732 aa8.34□□□□□ -1.07
SYNE2-225ENST00000557060 EIF4G2P78344 907 aaKnown RBP eCLIP8.34□□□□□ -1.07
SYNE2-225ENST00000557060 ANKRD30BQ9BXX2 1392 aa8.34□□□□□ -1.07
SYNE2-225ENST00000557060 ABCC2Q92887 1545 aa8.34□□□□□ -1.07
SYNE2-225ENST00000557060 SYCP2Q9BX26 1530 aa8.34□□□□□ -1.07
SYNE2-225ENST00000557060 ZBTB22O15209 634 aa8.33□□□□□ -1.08
SYNE2-225ENST00000557060 DCAF11Q8TEB1 546 aa8.33□□□□□ -1.08
SYNE2-225ENST00000557060 GCC2Q8IWJ2 1684 aa8.33□□□□□ -1.08
SYNE2-225ENST00000557060 TTC37Q6PGP7 1564 aa8.33□□□□□ -1.08
SYNE2-225ENST00000557060 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.32□□□□□ -1.08
SYNE2-225ENST00000557060 ANP32CO43423 234 aa8.32□□□□□ -1.08
SYNE2-225ENST00000557060 PZPP20742 1482 aa8.31□□□□□ -1.08
SYNE2-225ENST00000557060 MBD5Q9P267 1494 aa8.31□□□□□ -1.08
SYNE2-225ENST00000557060 SHROOM2Q13796 1616 aa8.31□□□□□ -1.08
SYNE2-225ENST00000557060 CLASP1Q7Z460 1538 aa8.31□□□□□ -1.08
SYNE2-225ENST00000557060 C11orf95C9JLR9 678 aaPredicted RBP8.31□□□□□ -1.08
SYNE2-225ENST00000557060 SPAG9O60271 1321 aaKnown RBP8.3□□□□□ -1.08
SYNE2-225ENST00000557060 CCDC141Q6ZP82 1450 aa8.3□□□□□ -1.08
SYNE2-225ENST00000557060 SAMD9LQ8IVG5 1584 aa8.3□□□□□ -1.08
SYNE2-225ENST00000557060 ADCY10Q96PN6 1610 aa8.3□□□□□ -1.08
SYNE2-225ENST00000557060 SENP3-EIF4A1A0A087X0R7 540 aa8.3□□□□□ -1.08
SYNE2-225ENST00000557060 WASHC2AQ641Q2 1341 aa8.29□□□□□ -1.08
SYNE2-225ENST00000557060 KIAA1107Q9UPP5 1409 aa8.29□□□□□ -1.08
SYNE2-225ENST00000557060 TRAPPC8Q9Y2L5 1435 aa8.29□□□□□ -1.08
SYNE2-225ENST00000557060 ZCCHC11Q5TAX3 1644 aaKnown RBP8.29□□□□□ -1.08
SYNE2-225ENST00000557060 CDC42BPBQ9Y5S2 1711 aa8.28□□□□□ -1.08
SYNE2-225ENST00000557060 PLEKHH2Q8IVE3 1493 aa8.28□□□□□ -1.08
SYNE2-225ENST00000557060 KIF3BO15066 747 aa8.28□□□□□ -1.08
SYNE2-225ENST00000557060 RSPH4AQ5TD94 716 aa8.28□□□□□ -1.08
SYNE2-225ENST00000557060 RPRD2Q5VT52 1461 aaKnown RBP8.28□□□□□ -1.08
SYNE2-225ENST00000557060 ARHGEF12Q9NZN5 1544 aa8.28□□□□□ -1.08
SYNE2-225ENST00000557060 CARD11Q9BXL7 1154 aa8.27□□□□□ -1.08
SYNE2-225ENST00000557060 PLCH2O75038 1416 aa8.27□□□□□ -1.09
SYNE2-225ENST00000557060 KDM5BQ9UGL1 1544 aa8.26□□□□□ -1.09
SYNE2-225ENST00000557060 ADGRL2O95490 1459 aa8.26□□□□□ -1.09
SYNE2-225ENST00000557060 ASXL2Q76L83 1435 aa8.26□□□□□ -1.09
SYNE2-225ENST00000557060 SCAPERQ9BY12 1400 aa8.26□□□□□ -1.09
SYNE2-225ENST00000557060 PREX2Q70Z35 1606 aa8.26□□□□□ -1.09
SYNE2-225ENST00000557060 RAPGEF3O95398 923 aa8.25□□□□□ -1.09
SYNE2-225ENST00000557060 GGT6Q6P531 493 aa8.25□□□□□ -1.09
SYNE2-225ENST00000557060 CHGAP10645 457 aaKnown RBP8.25□□□□□ -1.09
SYNE2-225ENST00000557060 FANCAO15360 1455 aa8.25□□□□□ -1.09
SYNE2-225ENST00000557060 WDR7Q9Y4E6 1490 aa8.25□□□□□ -1.09
SYNE2-225ENST00000557060 ADGBQ8N7X0 1667 aa8.25□□□□□ -1.09
SYNE2-225ENST00000557060 CROCC2H7BZ55 1655 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms